RNA–Protein interactions for RNA: ENST00000263187.3

MSH4-201, Transcript of mutS homolog 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSH4, Length 3,266 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4-201ENST00000263187 MILR1Q7Z6M3 343 aa9.07□□□□□ -0.96
MSH4-201ENST00000263187 TMEM126BQ8IUX1 230 aa9.07□□□□□ -0.96
MSH4-201ENST00000263187 PIANPQ8IYJ0 282 aa9.07□□□□□ -0.96
MSH4-201ENST00000263187 BPIFB6Q8NFQ5 453 aa9.07□□□□□ -0.96
MSH4-201ENST00000263187 EEF1AKMT1Q8WVE0 214 aa9.07□□□□□ -0.96
MSH4-201ENST00000263187 SERPINB11Q96P15 392 aa9.07□□□□□ -0.96
MSH4-201ENST00000263187 RPF2Q9H7B2 306 aaKnown RBP9.07□□□□□ -0.96
MSH4-201ENST00000263187 MRPL40Q9NQ50 206 aaKnown RBP9.07□□□□□ -0.96
MSH4-201ENST00000263187 CD274Q9NZQ7 290 aa9.07□□□□□ -0.96
MSH4-201ENST00000263187 AASSQ9UDR5 926 aa9.07□□□□□ -0.96
MSH4-201ENST00000263187 ZNF225Q9UK10 706 aa9.07□□□□□ -0.96
MSH4-201ENST00000263187 NUP214P35658 2090 aaPredicted RBP9.07□□□□□ -0.96
MSH4-201ENST00000263187 CDH23Q9H251 3354 aa9.06□□□□□ -0.96
MSH4-201ENST00000263187 MROH6A6NGR9 719 aa9.06□□□□□ -0.96
MSH4-201ENST00000263187 FFAR3O14843 346 aa9.06□□□□□ -0.96
MSH4-201ENST00000263187 GPR42O15529 346 aa9.06□□□□□ -0.96
MSH4-201ENST00000263187 SLC7A4O43246 635 aa9.06□□□□□ -0.96
MSH4-201ENST00000263187 SYNCRIPO60506 623 aaKnown RBP9.06□□□□□ -0.96
MSH4-201ENST00000263187 C1RP00736 705 aa9.06□□□□□ -0.96
MSH4-201ENST00000263187 ZNF182P17025 639 aaPredicted RBP9.06□□□□□ -0.96
MSH4-201ENST00000263187 DNAJB2P25686 324 aa9.06□□□□□ -0.96
MSH4-201ENST00000263187 IL12AP29459 219 aa9.06□□□□□ -0.96
MSH4-201ENST00000263187 POLR2IP36954 125 aaKnown RBP9.06□□□□□ -0.96
MSH4-201ENST00000263187 HTR6P50406 440 aa9.06□□□□□ -0.96
MSH4-201ENST00000263187 RPS24P62847 133 aaKnown RBP9.06□□□□□ -0.96
MSH4-201ENST00000263187 TNK2Q07912 1038 aa9.06□□□□□ -0.96
MSH4-201ENST00000263187 TRAF2Q12933 501 aa9.06□□□□□ -0.96
MSH4-201ENST00000263187 FOXD4Q12950 439 aaPredicted RBP9.06□□□□□ -0.96
MSH4-201ENST00000263187 TAF10Q12962 218 aa9.06□□□□□ -0.96
MSH4-201ENST00000263187 ATP1A4Q13733 1029 aa9.06□□□□□ -0.96
MSH4-201ENST00000263187 IMPG1Q17R60 797 aa9.06□□□□□ -0.96
MSH4-201ENST00000263187 ZRANB3Q5FWF4 1079 aa9.06□□□□□ -0.96
MSH4-201ENST00000263187 SMYD5Q6GMV2 418 aa9.06□□□□□ -0.96
MSH4-201ENST00000263187 C16orf59Q7L2K0 433 aa9.06□□□□□ -0.96
MSH4-201ENST00000263187 LPCAT1Q8NF37 534 aa9.06□□□□□ -0.96
MSH4-201ENST00000263187 OR6K2Q8NGY2 324 aa9.06□□□□□ -0.96
MSH4-201ENST00000263187 CLHC1Q8NHS4 586 aa9.06□□□□□ -0.96
MSH4-201ENST00000263187 FBXO30Q8TB52 745 aa9.06□□□□□ -0.96
MSH4-201ENST00000263187 PTCD2Q8WV60 388 aaKnown RBP9.06□□□□□ -0.96
MSH4-201ENST00000263187 FBXO32Q969P5 355 aa9.06□□□□□ -0.96
MSH4-201ENST00000263187 MTFMTQ96DP5 389 aaKnown RBP9.06□□□□□ -0.96
MSH4-201ENST00000263187 ITCHQ96J02 903 aa9.06□□□□□ -0.96
MSH4-201ENST00000263187 AGPAT4Q9NRZ5 378 aa9.06□□□□□ -0.96
MSH4-201ENST00000263187 MARCH2Q9P0N8 246 aa9.06□□□□□ -0.96
MSH4-201ENST00000263187 SLC8A2Q9UPR5 921 aa9.06□□□□□ -0.96
MSH4-201ENST00000263187 U3KQV3 271 aa9.06□□□□□ -0.96
MSH4-201ENST00000263187 CYBBP04839 570 aa9.06□□□□□ -0.96
MSH4-201ENST00000263187 BMP2P12643 396 aa9.06□□□□□ -0.96
MSH4-201ENST00000263187 IL7RP16871 459 aa9.06□□□□□ -0.96
MSH4-201ENST00000263187 FDXRP22570 491 aa9.06□□□□□ -0.96
MSH4-201ENST00000263187 ALDH3B2P48448 385 aa9.06□□□□□ -0.96
MSH4-201ENST00000263187 NAA20P61599 178 aa9.06□□□□□ -0.96
MSH4-201ENST00000263187 IL1RL1Q01638 556 aa9.06□□□□□ -0.96
MSH4-201ENST00000263187 RAB39AQ14964 217 aa9.06□□□□□ -0.96
MSH4-201ENST00000263187 PSAPL1Q6NUJ1 521 aa9.06□□□□□ -0.96
MSH4-201ENST00000263187 ITIH5Q86UX2 942 aa9.06□□□□□ -0.96
MSH4-201ENST00000263187 STK32CQ86UX6 486 aa9.06□□□□□ -0.96
MSH4-201ENST00000263187 PHYKPLQ8IUZ5 450 aa9.06□□□□□ -0.96
MSH4-201ENST00000263187 ERI1Q8IV48 349 aaKnown RBP9.06□□□□□ -0.96
MSH4-201ENST00000263187 LGI2Q8N0V4 545 aa9.06□□□□□ -0.96
MSH4-201ENST00000263187 CLEC4FQ8N1N0 589 aa9.06□□□□□ -0.96
MSH4-201ENST00000263187 DHRSXQ8N5I4 330 aa9.06□□□□□ -0.96
MSH4-201ENST00000263187 FAM86B1Q8N7N1 296 aa9.06□□□□□ -0.96
MSH4-201ENST00000263187 ANKFN1Q8N957 763 aa9.06□□□□□ -0.96
MSH4-201ENST00000263187 FIG4Q92562 907 aa9.06□□□□□ -0.96
MSH4-201ENST00000263187 CDKN2AIPNLQ96HQ2 116 aa9.06□□□□□ -0.96
MSH4-201ENST00000263187 MUS81Q96NY9 551 aa9.06□□□□□ -0.96
MSH4-201ENST00000263187 GPATCH1Q9BRR8 931 aaKnown RBP9.06□□□□□ -0.96
MSH4-201ENST00000263187 CHID1Q9BWS9 393 aa9.06□□□□□ -0.96
MSH4-201ENST00000263187 SARDHQ9UL12 918 aa9.06□□□□□ -0.96
MSH4-201ENST00000263187 GIT1Q9Y2X7 761 aa9.06□□□□□ -0.96
MSH4-201ENST00000263187 CBX4O00257 560 aa9.06□□□□□ -0.96
MSH4-201ENST00000263187 ZBTB11O95625 1053 aaPredicted RBP9.06□□□□□ -0.96
MSH4-201ENST00000263187 IRF1P10914 325 aa9.06□□□□□ -0.96
MSH4-201ENST00000263187 TCF3P15923 654 aa9.06□□□□□ -0.96
MSH4-201ENST00000263187 PRKACGP22612 351 aa9.06□□□□□ -0.96
MSH4-201ENST00000263187 GDF5P43026 501 aa9.06□□□□□ -0.96
MSH4-201ENST00000263187 EIF4EBP2Q13542 120 aaPredicted RBP9.06□□□□□ -0.96
MSH4-201ENST00000263187 LAPTM4AQ15012 233 aa9.06□□□□□ -0.96
MSH4-201ENST00000263187 TAF1CQ15572 869 aaPredicted RBP9.06□□□□□ -0.96
MSH4-201ENST00000263187 AARS2Q5JTZ9 985 aaKnown RBP9.06□□□□□ -0.96
MSH4-201ENST00000263187 ANKS6Q68DC2 871 aa9.06□□□□□ -0.96
MSH4-201ENST00000263187 NANOGP8Q6NSW7 305 aa9.06□□□□□ -0.96
MSH4-201ENST00000263187 TAF2Q6P1X5 1199 aa9.06□□□□□ -0.96
MSH4-201ENST00000263187 BLOC1S3Q6QNY0 202 aa9.06□□□□□ -0.96
MSH4-201ENST00000263187 GLT6D1Q7Z4J2 308 aa9.06□□□□□ -0.96
MSH4-201ENST00000263187 TMEM125Q96AQ2 219 aa9.06□□□□□ -0.96
MSH4-201ENST00000263187 BIRC7Q96CA5 298 aa9.06□□□□□ -0.96
MSH4-201ENST00000263187 L3HYPDHQ96EM0 354 aa9.06□□□□□ -0.96
MSH4-201ENST00000263187 CENPNQ96H22 339 aaPredicted RBP9.06□□□□□ -0.96
MSH4-201ENST00000263187 ATOH8Q96SQ7 321 aa9.06□□□□□ -0.96
MSH4-201ENST00000263187 PKMYT1Q99640 499 aa9.06□□□□□ -0.96
MSH4-201ENST00000263187 NPLQ9BXD5 320 aaPredicted RBP9.06□□□□□ -0.96
MSH4-201ENST00000263187 NACA2Q9H009 215 aa9.06□□□□□ -0.96
MSH4-201ENST00000263187 ARMC7Q9H6L4 198 aa9.06□□□□□ -0.96
MSH4-201ENST00000263187 NANOGQ9H9S0 305 aa9.06□□□□□ -0.96
MSH4-201ENST00000263187 SMURF2Q9HAU4 748 aa9.06□□□□□ -0.96
MSH4-201ENST00000263187 MRM3Q9HC36 420 aaKnown RBP9.06□□□□□ -0.96
MSH4-201ENST00000263187 GID8Q9NWU2 228 aa9.06□□□□□ -0.96
MSH4-201ENST00000263187 FKBPLQ9UIM3 349 aa9.06□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms