RNA–Protein interactions for RNA: ENST00000262327.9

LIG3-201, Transcript of DNA ligase 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIG3, Length 3,055 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-201ENST00000262327 SEMA3CQ99985 751 aa10□□□□□ -0.81
LIG3-201ENST00000262327 PRKD2Q9BZL6 878 aa10□□□□□ -0.81
LIG3-201ENST00000262327 LTB4R2Q9NPC1 389 aa10□□□□□ -0.81
LIG3-201ENST00000262327 MRPL40Q9NQ50 206 aaKnown RBP10□□□□□ -0.81
LIG3-201ENST00000262327 CCM2LQ9NUG4 571 aaPredicted RBP10□□□□□ -0.81
LIG3-201ENST00000262327 THEGQ9P2T0 379 aa10□□□□□ -0.81
LIG3-201ENST00000262327 GALPQ9UBC7 116 aa10□□□□□ -0.81
LIG3-201ENST00000262327 NYNRINQ9P2P1 1898 aaKnown RBP10□□□□□ -0.81
LIG3-201ENST00000262327 ZFC3H1O60293 1989 aaKnown RBP10□□□□□ -0.81
LIG3-201ENST00000262327 A0A1W2PPW3 197 aa10□□□□□ -0.81
LIG3-201ENST00000262327 GIPC1O14908 333 aa10□□□□□ -0.81
LIG3-201ENST00000262327 MUSKO15146 869 aa10□□□□□ -0.81
LIG3-201ENST00000262327 CLOCKO15516 846 aa10□□□□□ -0.81
LIG3-201ENST00000262327 MGEA5O60502 916 aa10□□□□□ -0.81
LIG3-201ENST00000262327 SNAP29O95721 258 aa10□□□□□ -0.81
LIG3-201ENST00000262327 IGLV3-25P01717 112 aa10□□□□□ -0.81
LIG3-201ENST00000262327 ODC1P11926 461 aa10□□□□□ -0.81
LIG3-201ENST00000262327 MTHFD2P13995 350 aa10□□□□□ -0.81
LIG3-201ENST00000262327 IL10P22301 178 aa10□□□□□ -0.81
LIG3-201ENST00000262327 FASP25445 335 aa10□□□□□ -0.81
LIG3-201ENST00000262327 PSMA4P25789 261 aaKnown RBP10□□□□□ -0.81
LIG3-201ENST00000262327 CDKN1CP49918 316 aaPredicted RBP10□□□□□ -0.81
LIG3-201ENST00000262327 UFM1P61960 85 aa10□□□□□ -0.81
LIG3-201ENST00000262327 PPP1R8Q12972 351 aaKnown RBP10□□□□□ -0.81
LIG3-201ENST00000262327 TIGD2Q4W5G0 525 aa10□□□□□ -0.81
LIG3-201ENST00000262327 SLC39A12Q504Y0 691 aa10□□□□□ -0.81
LIG3-201ENST00000262327 PYCR3Q53H96 274 aa10□□□□□ -0.81
LIG3-201ENST00000262327 UGT3A1Q6NUS8 523 aa10□□□□□ -0.81
LIG3-201ENST00000262327 C8orf82Q6P1X6 216 aaPredicted RBP10□□□□□ -0.81
LIG3-201ENST00000262327 METTL23Q86XA0 190 aa10□□□□□ -0.81
LIG3-201ENST00000262327 SPATA2LQ8IUW3 424 aaPredicted RBP10□□□□□ -0.81
LIG3-201ENST00000262327 ERI1Q8IV48 349 aaKnown RBP10□□□□□ -0.81
LIG3-201ENST00000262327 LRRC43Q8N309 656 aa10□□□□□ -0.81
LIG3-201ENST00000262327 TTC9BQ8N6N2 239 aa10□□□□□ -0.81
LIG3-201ENST00000262327 ANKFN1Q8N957 763 aa10□□□□□ -0.81
LIG3-201ENST00000262327 IGSF8Q969P0 613 aa10□□□□□ -0.81
LIG3-201ENST00000262327 IMP4Q96G21 291 aaKnown RBP10□□□□□ -0.81
LIG3-201ENST00000262327 TIMMDC1Q9NPL8 285 aa10□□□□□ -0.81
LIG3-201ENST00000262327 ABCC13Q9NSE7 274 aa10□□□□□ -0.81
LIG3-201ENST00000262327 INTS7Q9NVH2 962 aaKnown RBP10□□□□□ -0.81
LIG3-201ENST00000262327 CDC7O00311 574 aa9.99□□□□□ -0.81
LIG3-201ENST00000262327 LDB2O43679 373 aa9.99□□□□□ -0.81
LIG3-201ENST00000262327 BMP2P12643 396 aa9.99□□□□□ -0.81
LIG3-201ENST00000262327 CD52P31358 61 aa9.99□□□□□ -0.81
LIG3-201ENST00000262327 POLD2P49005 469 aa9.99□□□□□ -0.81
LIG3-201ENST00000262327 TSNQ15631 228 aaKnown RBP9.99□□□□□ -0.81
LIG3-201ENST00000262327 TIGD7Q6NT04 549 aaPredicted RBP9.99□□□□□ -0.81
LIG3-201ENST00000262327 TMEM214Q6NUQ4 689 aaKnown RBP9.99□□□□□ -0.81
LIG3-201ENST00000262327 BORAQ6PGQ7 559 aa9.99□□□□□ -0.81
LIG3-201ENST00000262327 TBPL2Q6SJ96 375 aa9.99□□□□□ -0.81
LIG3-201ENST00000262327 PAQR3Q6TCH7 311 aa9.99□□□□□ -0.81
LIG3-201ENST00000262327 KIAA0408Q6ZU52 694 aa9.99□□□□□ -0.81
LIG3-201ENST00000262327 ADGRG5Q8IZF4 528 aa9.99□□□□□ -0.81
LIG3-201ENST00000262327 CFAP52Q8N1V2 620 aa9.99□□□□□ -0.81
LIG3-201ENST00000262327 PTCD2Q8WV60 388 aaKnown RBP9.99□□□□□ -0.81
LIG3-201ENST00000262327 GPATCH1Q9BRR8 931 aaKnown RBP9.99□□□□□ -0.81
LIG3-201ENST00000262327 POLR1BQ9H9Y6 1135 aa9.99□□□□□ -0.81
LIG3-201ENST00000262327 VPS45Q9NRW7 570 aa9.99□□□□□ -0.81
LIG3-201ENST00000262327 OGDHLQ9ULD0 1010 aa9.99□□□□□ -0.81
LIG3-201ENST00000262327 SLC8A2Q9UPR5 921 aa9.99□□□□□ -0.81
LIG3-201ENST00000262327 CD3EAPO15446 510 aaKnown RBP9.99□□□□□ -0.81
LIG3-201ENST00000262327 FGF10O15520 208 aaPredicted RBP9.99□□□□□ -0.81
LIG3-201ENST00000262327 GLP2RO95838 553 aa9.99□□□□□ -0.81
LIG3-201ENST00000262327 NR4A1P22736 598 aa9.99□□□□□ -0.81
LIG3-201ENST00000262327 GSK3BP49841 420 aa9.99□□□□□ -0.81
LIG3-201ENST00000262327 MLLT6P55198 1093 aaPredicted RBP9.99□□□□□ -0.81
LIG3-201ENST00000262327 ARPP19P56211 112 aa9.99□□□□□ -0.81
LIG3-201ENST00000262327 ADRM1Q16186 407 aa9.99□□□□□ -0.81
LIG3-201ENST00000262327 CLPPQ16740 277 aaPredicted RBP9.99□□□□□ -0.81
LIG3-201ENST00000262327 FGD3Q5JSP0 725 aa9.99□□□□□ -0.81
LIG3-201ENST00000262327 FAM171BQ6P995 826 aa9.99□□□□□ -0.81
LIG3-201ENST00000262327 CAMK1DQ8IU85 385 aa9.99□□□□□ -0.81
LIG3-201ENST00000262327 KLHDC8BQ8IXV7 354 aa9.99□□□□□ -0.81
LIG3-201ENST00000262327 LZTR1Q8N653 840 aa9.99□□□□□ -0.81
LIG3-201ENST00000262327 SGCDQ92629 289 aa9.99□□□□□ -0.81
LIG3-201ENST00000262327 UHRF1Q96T88 793 aaPredicted RBP9.99□□□□□ -0.81
LIG3-201ENST00000262327 MRM3Q9HC36 420 aaKnown RBP9.99□□□□□ -0.81
LIG3-201ENST00000262327 SARS2Q9NP81 518 aaKnown RBP9.99□□□□□ -0.81
LIG3-201ENST00000262327 TRMT13Q9NUP7 481 aaKnown RBP9.99□□□□□ -0.81
LIG3-201ENST00000262327 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP9.99□□□□□ -0.81
LIG3-201ENST00000262327 PADI4Q9UM07 663 aa9.99□□□□□ -0.81
LIG3-201ENST00000262327 ASB1Q9Y576 335 aa9.99□□□□□ -0.81
LIG3-201ENST00000262327 SPO11Q9Y5K1 396 aa9.99□□□□□ -0.81
LIG3-201ENST00000262327 FADS3Q9Y5Q0 445 aa9.99□□□□□ -0.81
LIG3-201ENST00000262327 HTTP42858 3142 aa9.99□□□□□ -0.81
LIG3-201ENST00000262327 GPR39O43194 453 aa9.98□□□□□ -0.81
LIG3-201ENST00000262327 CCL5P13501 91 aa9.98□□□□□ -0.81
LIG3-201ENST00000262327 EEF1B2P24534 225 aaKnown RBP9.98□□□□□ -0.81
LIG3-201ENST00000262327 RENBPP51606 427 aa9.98□□□□□ -0.81
LIG3-201ENST00000262327 ESRRGP62508 458 aa9.98□□□□□ -0.81
LIG3-201ENST00000262327 YWHAHQ04917 246 aaPredicted RBP9.98□□□□□ -0.81
LIG3-201ENST00000262327 LIPEQ05469 1076 aa9.98□□□□□ -0.81
LIG3-201ENST00000262327 INPP5AQ14642 412 aa9.98□□□□□ -0.81
LIG3-201ENST00000262327 SLC2A7Q6PXP3 512 aa9.98□□□□□ -0.81
LIG3-201ENST00000262327 PHYKPLQ8IUZ5 450 aa9.98□□□□□ -0.81
LIG3-201ENST00000262327 IRGQQ8WZA9 623 aa9.98□□□□□ -0.81
LIG3-201ENST00000262327 TOP1MTQ969P6 601 aa9.98□□□□□ -0.81
LIG3-201ENST00000262327 ERLEC1Q96DZ1 483 aa9.98□□□□□ -0.81
LIG3-201ENST00000262327 RNF145Q96MT1 663 aa9.98□□□□□ -0.81
LIG3-201ENST00000262327 SLC30A3Q99726 388 aa9.98□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms