RNA–Protein interactions for RNA: ENST00000254950.12

VPS4A-201, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4A, Length 4,100 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-201ENST00000254950 ZNF805Q5CZA5 627 aa11.51□□□□□ -0.57
VPS4A-201ENST00000254950 LDLRAP1Q5SW96 308 aa11.51□□□□□ -0.57
VPS4A-201ENST00000254950 RBM20Q5T481 1227 aaKnown RBP11.51□□□□□ -0.57
VPS4A-201ENST00000254950 UBE2R2Q712K3 238 aaPredicted RBP11.51□□□□□ -0.57
VPS4A-201ENST00000254950 P2RY13Q9BPV8 354 aa11.51□□□□□ -0.57
VPS4A-201ENST00000254950 VN1R3Q9BXE9 311 aa11.51□□□□□ -0.57
VPS4A-201ENST00000254950 EFCAB1Q9HAE3 211 aa11.51□□□□□ -0.57
VPS4A-201ENST00000254950 ZNF358Q9NW07 568 aa11.51□□□□□ -0.57
VPS4A-201ENST00000254950 ANGPTL2Q9UKU9 493 aa11.51□□□□□ -0.57
VPS4A-201ENST00000254950 OR2AG2A6NM03 316 aa11.51□□□□□ -0.57
VPS4A-201ENST00000254950 RFXAPO00287 272 aa11.51□□□□□ -0.57
VPS4A-201ENST00000254950 VPS4BO75351 444 aa11.51□□□□□ -0.57
VPS4A-201ENST00000254950 PDHA1P08559 390 aa11.51□□□□□ -0.57
VPS4A-201ENST00000254950 TSPAN8P19075 237 aa11.51□□□□□ -0.57
VPS4A-201ENST00000254950 KCNA5P22460 613 aa11.51□□□□□ -0.57
VPS4A-201ENST00000254950 MAPK1P28482 360 aa11.51□□□□□ -0.57
VPS4A-201ENST00000254950 SCTRP47872 440 aa11.51□□□□□ -0.57
VPS4A-201ENST00000254950 ELAVL3Q14576 367 aaKnown RBP11.51□□□□□ -0.57
VPS4A-201ENST00000254950 ZNF776Q68DI1 518 aaPredicted RBP11.51□□□□□ -0.57
VPS4A-201ENST00000254950 TEX9Q8N6V9 391 aa11.51□□□□□ -0.57
VPS4A-201ENST00000254950 ARRDC2Q8TBH0 407 aa11.51□□□□□ -0.57
VPS4A-201ENST00000254950 CATSPER2Q96P56 530 aa11.51□□□□□ -0.57
VPS4A-201ENST00000254950 ZSCAN5AQ9BUG6 496 aa11.51□□□□□ -0.57
VPS4A-201ENST00000254950 EPB41L4BQ9H329 900 aa11.51□□□□□ -0.57
VPS4A-201ENST00000254950 IL21Q9HBE4 155 aa11.51□□□□□ -0.57
VPS4A-201ENST00000254950 ARNT2Q9HBZ2 717 aa11.51□□□□□ -0.57
VPS4A-201ENST00000254950 FAM53CQ9NYF3 392 aa11.51□□□□□ -0.57
VPS4A-201ENST00000254950 POLG2Q9UHN1 485 aa11.51□□□□□ -0.57
VPS4A-201ENST00000254950 ZNF839A8K0R7 811 aa11.5□□□□□ -0.57
VPS4A-201ENST00000254950 PRAMEF12O95522 483 aa11.5□□□□□ -0.57
VPS4A-201ENST00000254950 PTPN5P54829 565 aa11.5□□□□□ -0.57
VPS4A-201ENST00000254950 ATP6AP1LQ52LC2 224 aa11.5□□□□□ -0.57
VPS4A-201ENST00000254950 PAQR3Q6TCH7 311 aa11.5□□□□□ -0.57
VPS4A-201ENST00000254950 FATE1Q969F0 183 aa11.5□□□□□ -0.57
VPS4A-201ENST00000254950 RIOK2Q9BVS4 552 aaKnown RBP11.5□□□□□ -0.57
VPS4A-201ENST00000254950 CACNA2D2Q9NY47 1150 aa11.5□□□□□ -0.57
VPS4A-201ENST00000254950 ZCWPW2A0A1B0GU75 182 aa11.5□□□□□ -0.57
VPS4A-201ENST00000254950 LRRC72A6NJI9 287 aa11.5□□□□□ -0.57
VPS4A-201ENST00000254950 H3BM21 787 aa11.5□□□□□ -0.57
VPS4A-201ENST00000254950 TXNDC9O14530 226 aa11.5□□□□□ -0.57
VPS4A-201ENST00000254950 SMAD6O43541 496 aaKnown RBP11.5□□□□□ -0.57
VPS4A-201ENST00000254950 NDUFS2O75306 463 aa11.5□□□□□ -0.57
VPS4A-201ENST00000254950 TM7SF2O76062 418 aa11.5□□□□□ -0.57
VPS4A-201ENST00000254950 SLC35G4P0C7Q5 338 aa11.5□□□□□ -0.57
VPS4A-201ENST00000254950 FOXN2P32314 431 aa11.5□□□□□ -0.57
VPS4A-201ENST00000254950 GRK3P35626 688 aa11.5□□□□□ -0.57
VPS4A-201ENST00000254950 HNF1BP35680 557 aa11.5□□□□□ -0.57
VPS4A-201ENST00000254950 NUDT2P50583 147 aa11.5□□□□□ -0.57
VPS4A-201ENST00000254950 PLCL1Q15111 1095 aa11.5□□□□□ -0.57
VPS4A-201ENST00000254950 TSNQ15631 228 aaKnown RBP11.5□□□□□ -0.57
VPS4A-201ENST00000254950 AGKQ53H12 422 aa11.5□□□□□ -0.57
VPS4A-201ENST00000254950 GPRIN3Q6ZVF9 776 aa11.5□□□□□ -0.57
VPS4A-201ENST00000254950 OOSP2Q86WS3 158 aa11.5□□□□□ -0.57
VPS4A-201ENST00000254950 CLYBLQ8N0X4 340 aa11.5□□□□□ -0.57
VPS4A-201ENST00000254950 SIDT2Q8NBJ9 832 aaKnown RBP11.5□□□□□ -0.57
VPS4A-201ENST00000254950 SIPA1Q96FS4 1042 aa11.5□□□□□ -0.57
VPS4A-201ENST00000254950 PRPF18Q99633 342 aaKnown RBP11.5□□□□□ -0.57
VPS4A-201ENST00000254950 WDR70Q9NW82 654 aa11.5□□□□□ -0.57
VPS4A-201ENST00000254950 SORCS3Q9UPU3 1222 aa11.5□□□□□ -0.57
VPS4A-201ENST00000254950 C16orf96A6NNT2 1141 aa11.5□□□□□ -0.57
VPS4A-201ENST00000254950 TTC34A8MYJ7 566 aa11.5□□□□□ -0.57
VPS4A-201ENST00000254950 H0Y3Z8 333 aa11.5□□□□□ -0.57
VPS4A-201ENST00000254950 DCXO43602 365 aa11.5□□□□□ -0.57
VPS4A-201ENST00000254950 RFPL1O75677 317 aa11.5□□□□□ -0.57
VPS4A-201ENST00000254950 OTCP00480 354 aa11.5□□□□□ -0.57
VPS4A-201ENST00000254950 MAPK9P45984 424 aa11.5□□□□□ -0.57
VPS4A-201ENST00000254950 ARF5P84085 180 aa11.5□□□□□ -0.57
VPS4A-201ENST00000254950 IRF9Q00978 393 aa11.5□□□□□ -0.57
VPS4A-201ENST00000254950 CYLC2Q14093 348 aaPredicted RBP11.5□□□□□ -0.57
VPS4A-201ENST00000254950 CHRDL2Q6WN34 429 aa11.5□□□□□ -0.57
VPS4A-201ENST00000254950 POLMQ9NP87 494 aaPredicted RBP11.5□□□□□ -0.57
VPS4A-201ENST00000254950 PNPOQ9NVS9 261 aa11.5□□□□□ -0.57
VPS4A-201ENST00000254950 CCL26Q9Y258 94 aa11.5□□□□□ -0.57
VPS4A-201ENST00000254950 LCTP09848 1927 aa11.5□□□□□ -0.57
VPS4A-201ENST00000254950 AZIN1O14977 448 aa11.5□□□□□ -0.57
VPS4A-201ENST00000254950 ATXN8OSP0DMR3 200 aa11.5□□□□□ -0.57
VPS4A-201ENST00000254950 ARSAP15289 507 aa11.5□□□□□ -0.57
VPS4A-201ENST00000254950 DNAJB1P25685 340 aa11.5□□□□□ -0.57
VPS4A-201ENST00000254950 ARSDP51689 593 aa11.5□□□□□ -0.57
VPS4A-201ENST00000254950 USP4Q13107 963 aa11.5□□□□□ -0.57
VPS4A-201ENST00000254950 SLC14A2Q15849 920 aa11.5□□□□□ -0.57
VPS4A-201ENST00000254950 DUSP6Q16828 381 aa11.5□□□□□ -0.57
VPS4A-201ENST00000254950 TMTC4Q5T4D3 741 aa11.5□□□□□ -0.57
VPS4A-201ENST00000254950 UBAP2Q5T6F2 1119 aaKnown RBP11.5□□□□□ -0.57
VPS4A-201ENST00000254950 LILRA6Q6PI73 481 aa11.5□□□□□ -0.57
VPS4A-201ENST00000254950 FOXR1Q6PIV2 292 aa11.5□□□□□ -0.57
VPS4A-201ENST00000254950 TEX26Q8N6G2 289 aa11.5□□□□□ -0.57
VPS4A-201ENST00000254950 SKA1Q96BD8 255 aa11.5□□□□□ -0.57
VPS4A-201ENST00000254950 NUS1Q96E22 293 aa11.5□□□□□ -0.57
VPS4A-201ENST00000254950 TFB2MQ9H5Q4 396 aaKnown RBP11.5□□□□□ -0.57
VPS4A-201ENST00000254950 SAR1AQ9NR31 198 aa11.5□□□□□ -0.57
VPS4A-201ENST00000254950 ARMCX1Q9P291 453 aa11.5□□□□□ -0.57
VPS4A-201ENST00000254950 KLQ9UEF7 1012 aa11.5□□□□□ -0.57
VPS4A-201ENST00000254950 FBXO10Q9UK96 956 aa11.5□□□□□ -0.57
VPS4A-201ENST00000254950 ASF1AQ9Y294 204 aa11.5□□□□□ -0.57
VPS4A-201ENST00000254950 GPSM3Q9Y4H4 160 aa11.5□□□□□ -0.57
VPS4A-201ENST00000254950 TGDSO95455 350 aa11.49□□□□□ -0.57
VPS4A-201ENST00000254950 PROCP04070 461 aa11.49□□□□□ -0.57
VPS4A-201ENST00000254950 HOXB2P14652 356 aa11.49□□□□□ -0.57
VPS4A-201ENST00000254950 HLA-FP30511 346 aa11.49□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms