RNA–Protein interactions for RNA: ENST00000254351.8

SDC1-201, Transcript of syndecan 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC1, Length 3,147 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-201ENST00000254351 ENPP6Q6UWR7 440 aa14.29□□□□□ -0.12
SDC1-201ENST00000254351 ZDHHC13Q8IUH4 622 aa14.29□□□□□ -0.12
SDC1-201ENST00000254351 TEKT5Q96M29 485 aa14.29□□□□□ -0.12
SDC1-201ENST00000254351 CDK15Q96Q40 435 aa14.29□□□□□ -0.12
SDC1-201ENST00000254351 NODALQ96S42 347 aa14.29□□□□□ -0.12
SDC1-201ENST00000254351 HOPXQ9BPY8 73 aaPredicted RBP14.29□□□□□ -0.12
SDC1-201ENST00000254351 SMOC2Q9H3U7 446 aa14.29□□□□□ -0.12
SDC1-201ENST00000254351 SCUBE2Q9NQ36 999 aa14.29□□□□□ -0.12
SDC1-201ENST00000254351 ERVK-18Q9QC07 812 aa14.29□□□□□ -0.12
SDC1-201ENST00000254351 POLG2Q9UHN1 485 aa14.29□□□□□ -0.12
SDC1-201ENST00000254351 G3V2T6 193 aa14.28□□□□□ -0.12
SDC1-201ENST00000254351 MITFO75030 526 aaPredicted RBP14.28□□□□□ -0.12
SDC1-201ENST00000254351 INSRRP14616 1297 aa14.28□□□□□ -0.12
SDC1-201ENST00000254351 HRH2P25021 359 aa14.28□□□□□ -0.12
SDC1-201ENST00000254351 DGKQP52824 942 aa14.28□□□□□ -0.12
SDC1-201ENST00000254351 GRSF1Q12849 480 aaKnown RBP eCLIP14.28□□□□□ -0.12
SDC1-201ENST00000254351 KCNAB2Q13303 367 aa14.28□□□□□ -0.12
SDC1-201ENST00000254351 SYT16Q17RD7 645 aa14.28□□□□□ -0.12
SDC1-201ENST00000254351 UNC50Q53HI1 259 aa14.28□□□□□ -0.12
SDC1-201ENST00000254351 C6orf141Q5SZD1 244 aa14.28□□□□□ -0.12
SDC1-201ENST00000254351 USP43Q70EL4 1123 aa14.28□□□□□ -0.12
SDC1-201ENST00000254351 REPS2Q8NFH8 660 aa14.28□□□□□ -0.12
SDC1-201ENST00000254351 ITFG1Q8TB96 612 aa14.28□□□□□ -0.12
SDC1-201ENST00000254351 FKBP10Q96AY3 582 aa14.28□□□□□ -0.12
SDC1-201ENST00000254351 MCMBPQ9BTE3 642 aa14.28□□□□□ -0.12
SDC1-201ENST00000254351 AMBRA1Q9C0C7 1298 aa14.28□□□□□ -0.12
SDC1-201ENST00000254351 TKTL2Q9H0I9 626 aa14.28□□□□□ -0.12
SDC1-201ENST00000254351 TRIT1Q9H3H1 467 aaKnown RBP14.28□□□□□ -0.12
SDC1-201ENST00000254351 RNF181Q9P0P0 153 aa14.28□□□□□ -0.12
SDC1-201ENST00000254351 KIAA1257Q9ULG3 409 aa14.28□□□□□ -0.12
SDC1-201ENST00000254351 VWA7Q9Y334 891 aa14.28□□□□□ -0.12
SDC1-201ENST00000254351 IGKV6D-21A0A0A0MT36 114 aa14.28□□□□□ -0.12
SDC1-201ENST00000254351 CCDC154A6NI56 674 aa14.28□□□□□ -0.12
SDC1-201ENST00000254351 TBC1D4O60343 1298 aa14.28□□□□□ -0.12
SDC1-201ENST00000254351 C1RP00736 705 aa14.28□□□□□ -0.12
SDC1-201ENST00000254351 ZNF286BP0CG31 522 aa14.28□□□□□ -0.12
SDC1-201ENST00000254351 LEPRP48357 1165 aaKnown RBP14.28□□□□□ -0.12
SDC1-201ENST00000254351 TRPC1P48995 793 aa14.28□□□□□ -0.12
SDC1-201ENST00000254351 SNX16P57768 344 aa14.28□□□□□ -0.12
SDC1-201ENST00000254351 RACK1P63244 317 aaKnown RBP14.28□□□□□ -0.12
SDC1-201ENST00000254351 IFITM2Q01629 132 aa14.28□□□□□ -0.12
SDC1-201ENST00000254351 EPS8Q12929 822 aa14.28□□□□□ -0.12
SDC1-201ENST00000254351 MADCAM1Q13477 382 aa14.28□□□□□ -0.12
SDC1-201ENST00000254351 SMN1Q16637 294 aaKnown RBP14.28□□□□□ -0.12
SDC1-201ENST00000254351 C8orf82Q6P1X6 216 aaPredicted RBP14.28□□□□□ -0.12
SDC1-201ENST00000254351 KIAA0408Q6ZU52 694 aa14.28□□□□□ -0.12
SDC1-201ENST00000254351 STRADAQ7RTN6 431 aa14.28□□□□□ -0.12
SDC1-201ENST00000254351 FAM83AQ86UY5 434 aa14.28□□□□□ -0.12
SDC1-201ENST00000254351 FAM83FQ8NEG4 500 aaPredicted RBP14.28□□□□□ -0.12
SDC1-201ENST00000254351 ULBP1Q9BZM6 244 aa14.28□□□□□ -0.12
SDC1-201ENST00000254351 GPN2Q9H9Y4 310 aaPredicted RBP14.28□□□□□ -0.12
SDC1-201ENST00000254351 HPS4Q9NQG7 708 aa14.28□□□□□ -0.12
SDC1-201ENST00000254351 RASSF1Q9NS23 344 aa14.28□□□□□ -0.12
SDC1-201ENST00000254351 LIMD1Q9UGP4 676 aa14.28□□□□□ -0.12
SDC1-201ENST00000254351 OAS3Q9Y6K5 1087 aaKnown RBP14.28□□□□□ -0.12
SDC1-201ENST00000254351 ENPP3O14638 875 aa14.28□□□□□ -0.12
SDC1-201ENST00000254351 MOCS2O96007 188 aaPredicted RBP14.28□□□□□ -0.12
SDC1-201ENST00000254351 PRSS56P0CW18 603 aa14.28□□□□□ -0.12
SDC1-201ENST00000254351 ZNF678Q5SXM1 525 aa14.28□□□□□ -0.12
SDC1-201ENST00000254351 DDX59Q5T1V6 619 aaKnown RBP eCLIP14.28□□□□□ -0.12
SDC1-201ENST00000254351 HECTD2Q5U5R9 776 aa14.28□□□□□ -0.12
SDC1-201ENST00000254351 METTL7BQ6UX53 244 aa14.28□□□□□ -0.12
SDC1-201ENST00000254351 TBC1D21Q8IYX1 336 aa14.28□□□□□ -0.12
SDC1-201ENST00000254351 CLYBLQ8N0X4 340 aa14.28□□□□□ -0.12
SDC1-201ENST00000254351 CHDHQ8NE62 594 aaPredicted RBP14.28□□□□□ -0.12
SDC1-201ENST00000254351 DUS3LQ96G46 650 aaKnown RBP14.28□□□□□ -0.12
SDC1-201ENST00000254351 GPR20Q99678 358 aa14.28□□□□□ -0.12
SDC1-201ENST00000254351 KIFC1Q9BW19 673 aa14.28□□□□□ -0.12
SDC1-201ENST00000254351 TDRD1Q9BXT4 1180 aaKnown RBP14.28□□□□□ -0.12
SDC1-201ENST00000254351 ASB7Q9H672 318 aa14.28□□□□□ -0.12
SDC1-201ENST00000254351 ANKMY1Q9P2S6 941 aa14.28□□□□□ -0.12
SDC1-201ENST00000254351 ITGB1BP2Q9UKP3 347 aa14.28□□□□□ -0.12
SDC1-201ENST00000254351 FAM50BQ9Y247 325 aa14.28□□□□□ -0.12
SDC1-201ENST00000254351 PMF1-BGLAPU3KQ54 211 aa14.28□□□□□ -0.12
SDC1-201ENST00000254351 ANKRD34BA5PLL1 514 aa14.27□□□□□ -0.12
SDC1-201ENST00000254351 SOWAHBA6NEL2 793 aa14.27□□□□□ -0.12
SDC1-201ENST00000254351 TAF4O00268 1085 aa14.27□□□□□ -0.12
SDC1-201ENST00000254351 AZIN1O14977 448 aa14.27□□□□□ -0.12
SDC1-201ENST00000254351 DEAF1O75398 565 aaPredicted RBP14.27□□□□□ -0.12
SDC1-201ENST00000254351 TOMM70O94826 608 aa14.27□□□□□ -0.12
SDC1-201ENST00000254351 CST1P01037 141 aa14.27□□□□□ -0.12
SDC1-201ENST00000254351 GPIP06744 558 aa14.27□□□□□ -0.12
SDC1-201ENST00000254351 ARCN1P48444 511 aaKnown RBP14.27□□□□□ -0.12
SDC1-201ENST00000254351 EMX1Q04741 257 aaPredicted RBP14.27□□□□□ -0.12
SDC1-201ENST00000254351 BNIP2Q12982 314 aa14.27□□□□□ -0.12
SDC1-201ENST00000254351 DAG1Q14118 895 aa14.27□□□□□ -0.12
SDC1-201ENST00000254351 PDZD4Q76G19 769 aaPredicted RBP14.27□□□□□ -0.12
SDC1-201ENST00000254351 ZNF555Q8NEP9 628 aa14.27□□□□□ -0.12
SDC1-201ENST00000254351 WNT8BQ93098 351 aa14.27□□□□□ -0.12
SDC1-201ENST00000254351 GAD1Q99259 594 aa14.27□□□□□ -0.12
SDC1-201ENST00000254351 CARS2Q9HA77 564 aaKnown RBP14.27□□□□□ -0.12
SDC1-201ENST00000254351 AKIP1Q9NQ31 210 aa14.27□□□□□ -0.12
SDC1-201ENST00000254351 NDFIP2Q9NV92 336 aa14.27□□□□□ -0.12
SDC1-201ENST00000254351 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP14.27□□□□□ -0.12
SDC1-201ENST00000254351 STAP1Q9ULZ2 295 aa14.27□□□□□ -0.12
SDC1-201ENST00000254351 GPSM3Q9Y4H4 160 aa14.27□□□□□ -0.12
SDC1-201ENST00000254351 PCDHA9Q9Y5H5 950 aa14.27□□□□□ -0.12
SDC1-201ENST00000254351 TRIM64A6NGJ6 449 aa14.27□□□□□ -0.13
SDC1-201ENST00000254351 ASNA1O43681 348 aa14.27□□□□□ -0.13
SDC1-201ENST00000254351 GOT2P00505 430 aaKnown RBP14.27□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms