RNA–Protein interactions for RNA: ENST00000003302.8

USP28-201, Transcript of ubiquitin specific peptidase 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP28, Length 4,669 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-201ENST00000003302 XPOTO43592 962 aaKnown RBP10.62□□□□□ -0.71
USP28-201ENST00000003302 NOBOXO60393 691 aa10.62□□□□□ -0.71
USP28-201ENST00000003302 OR4F21O95013 312 aa10.62□□□□□ -0.71
USP28-201ENST00000003302 DNAJB2P25686 324 aa10.62□□□□□ -0.71
USP28-201ENST00000003302 TGFBR1P36897 503 aa10.62□□□□□ -0.71
USP28-201ENST00000003302 STX5Q13190 355 aa10.62□□□□□ -0.71
USP28-201ENST00000003302 RAB39AQ14964 217 aa10.62□□□□□ -0.71
USP28-201ENST00000003302 PIWIL3Q7Z3Z3 882 aaKnown RBP10.62□□□□□ -0.71
USP28-201ENST00000003302 PROKR1Q8TCW9 393 aa10.62□□□□□ -0.71
USP28-201ENST00000003302 SREK1Q8WXA9 508 aaKnown RBP10.62□□□□□ -0.71
USP28-201ENST00000003302 DLG3Q92796 817 aa10.62□□□□□ -0.71
USP28-201ENST00000003302 FUBP1Q96AE4 644 aaKnown RBP10.62□□□□□ -0.71
USP28-201ENST00000003302 COG8Q96MW5 612 aa10.62□□□□□ -0.71
USP28-201ENST00000003302 BIRC8Q96P09 236 aa10.62□□□□□ -0.71
USP28-201ENST00000003302 NPLQ9BXD5 320 aaPredicted RBP10.62□□□□□ -0.71
USP28-201ENST00000003302 CHD5Q8TDI0 1954 aa10.62□□□□□ -0.71
USP28-201ENST00000003302 SUPT3HB4E1H0 165 aa10.62□□□□□ -0.71
USP28-201ENST00000003302 PRLP01236 227 aa10.62□□□□□ -0.71
USP28-201ENST00000003302 CNPP09543 421 aaKnown RBP10.62□□□□□ -0.71
USP28-201ENST00000003302 GKP32189 559 aa10.62□□□□□ -0.71
USP28-201ENST00000003302 CLCQ05315 142 aa10.62□□□□□ -0.71
USP28-201ENST00000003302 LPIN1Q14693 890 aa10.62□□□□□ -0.71
USP28-201ENST00000003302 MBTPS1Q14703 1052 aa10.62□□□□□ -0.71
USP28-201ENST00000003302 MBOAT1Q6ZNC8 495 aa10.62□□□□□ -0.71
USP28-201ENST00000003302 RPRD1AQ96P16 312 aaPredicted RBP10.62□□□□□ -0.71
USP28-201ENST00000003302 SLC25A23Q9BV35 468 aa10.62□□□□□ -0.71
USP28-201ENST00000003302 XYLBO75191 536 aa10.62□□□□□ -0.71
USP28-201ENST00000003302 TMCC1O94876 653 aa10.62□□□□□ -0.71
USP28-201ENST00000003302 PAPSS2O95340 614 aaPredicted RBP10.62□□□□□ -0.71
USP28-201ENST00000003302 AGXTP21549 392 aa10.62□□□□□ -0.71
USP28-201ENST00000003302 ADARP55265 1226 aaKnown RBP10.62□□□□□ -0.71
USP28-201ENST00000003302 NANOGP8Q6NSW7 305 aa10.62□□□□□ -0.71
USP28-201ENST00000003302 TMEM179BQ7Z7N9 219 aa10.62□□□□□ -0.71
USP28-201ENST00000003302 RBM23Q86U06 439 aaKnown RBP10.62□□□□□ -0.71
USP28-201ENST00000003302 CLHC1Q8NHS4 586 aa10.62□□□□□ -0.71
USP28-201ENST00000003302 GIPC2Q8TF65 315 aa10.62□□□□□ -0.71
USP28-201ENST00000003302 NANOGQ9H9S0 305 aa10.62□□□□□ -0.71
USP28-201ENST00000003302 ARNT2Q9HBZ2 717 aa10.62□□□□□ -0.71
USP28-201ENST00000003302 PCDH12Q9NPG4 1184 aa10.62□□□□□ -0.71
USP28-201ENST00000003302 SDR39U1Q9NRG7 319 aaPredicted RBP10.62□□□□□ -0.71
USP28-201ENST00000003302 MBD1Q9UIS9 605 aaPredicted RBP10.62□□□□□ -0.71
USP28-201ENST00000003302 U3KQV3 271 aa10.62□□□□□ -0.71
USP28-201ENST00000003302 AIF1P55008 147 aa10.61□□□□□ -0.71
USP28-201ENST00000003302 LIPEQ05469 1076 aa10.61□□□□□ -0.71
USP28-201ENST00000003302 FAM110CQ1W6H9 321 aa10.61□□□□□ -0.71
USP28-201ENST00000003302 SLC36A3Q495N2 470 aa10.61□□□□□ -0.71
USP28-201ENST00000003302 RFTN2Q52LD8 501 aaPredicted RBP10.61□□□□□ -0.71
USP28-201ENST00000003302 LAIR2Q6ISS4 152 aa10.61□□□□□ -0.71
USP28-201ENST00000003302 ENPP6Q6UWR7 440 aa10.61□□□□□ -0.71
USP28-201ENST00000003302 MILR1Q7Z6M3 343 aa10.61□□□□□ -0.71
USP28-201ENST00000003302 ZC3H7AQ8IWR0 971 aaKnown RBP10.61□□□□□ -0.71
USP28-201ENST00000003302 RNF175Q8N4F7 328 aa10.61□□□□□ -0.71
USP28-201ENST00000003302 DTWD1Q8N5C7 304 aa10.61□□□□□ -0.71
USP28-201ENST00000003302 CLDN19Q8N6F1 224 aa10.61□□□□□ -0.71
USP28-201ENST00000003302 LINC01599Q8WXQ3 324 aa10.61□□□□□ -0.71
USP28-201ENST00000003302 MYOCQ99972 504 aa10.61□□□□□ -0.71
USP28-201ENST00000003302 ALOXE3Q9BYJ1 711 aa10.61□□□□□ -0.71
USP28-201ENST00000003302 SLC38A7Q9NVC3 462 aa10.61□□□□□ -0.71
USP28-201ENST00000003302 CCDC88CQ9P219 2028 aa10.61□□□□□ -0.71
USP28-201ENST00000003302 SLCO1B7G3V0H7 640 aa10.61□□□□□ -0.71
USP28-201ENST00000003302 ADAM12O43184 909 aa10.61□□□□□ -0.71
USP28-201ENST00000003302 HTR1AP08908 422 aa10.61□□□□□ -0.71
USP28-201ENST00000003302 SLC2A3P11169 496 aa10.61□□□□□ -0.71
USP28-201ENST00000003302 BMP2P12643 396 aa10.61□□□□□ -0.71
USP28-201ENST00000003302 OR1E1P30953 314 aa10.61□□□□□ -0.71
USP28-201ENST00000003302 MAGEA10P43363 369 aaPredicted RBP10.61□□□□□ -0.71
USP28-201ENST00000003302 GNA12Q03113 381 aa10.61□□□□□ -0.71
USP28-201ENST00000003302 FAM45BPQ6NSW5 357 aa10.61□□□□□ -0.71
USP28-201ENST00000003302 BLOC1S3Q6QNY0 202 aa10.61□□□□□ -0.71
USP28-201ENST00000003302 GPR180Q86V85 440 aa10.61□□□□□ -0.71
USP28-201ENST00000003302 FAM45AQ8TCE6 357 aa10.61□□□□□ -0.71
USP28-201ENST00000003302 L3HYPDHQ96EM0 354 aa10.61□□□□□ -0.71
USP28-201ENST00000003302 CDKN2AIPNLQ96HQ2 116 aa10.61□□□□□ -0.71
USP28-201ENST00000003302 ALG2Q9H553 416 aa10.61□□□□□ -0.71
USP28-201ENST00000003302 POLR1BQ9H9Y6 1135 aa10.61□□□□□ -0.71
USP28-201ENST00000003302 ABCC13Q9NSE7 274 aa10.61□□□□□ -0.71
USP28-201ENST00000003302 LOC285095A0A1B0GVY8 99 aa10.61□□□□□ -0.71
USP28-201ENST00000003302 BTN3A1O00481 513 aa10.61□□□□□ -0.71
USP28-201ENST00000003302 RPL17P18621 184 aaKnown RBP10.61□□□□□ -0.71
USP28-201ENST00000003302 UGT1A1P22309 533 aa10.61□□□□□ -0.71
USP28-201ENST00000003302 PCSK1P29120 753 aa10.61□□□□□ -0.71
USP28-201ENST00000003302 ERVPABLB-1P60509 514 aa10.61□□□□□ -0.71
USP28-201ENST00000003302 MAP2K5Q13163 448 aa10.61□□□□□ -0.71
USP28-201ENST00000003302 CLLU1OSQ5K130 101 aa10.61□□□□□ -0.71
USP28-201ENST00000003302 SAMD4BQ5PRF9 694 aaKnown RBP10.61□□□□□ -0.71
USP28-201ENST00000003302 KANK2Q63ZY3 851 aa10.61□□□□□ -0.71
USP28-201ENST00000003302 LAIR1Q6GTX8 287 aa10.61□□□□□ -0.71
USP28-201ENST00000003302 TTC33Q6PID6 262 aaPredicted RBP10.61□□□□□ -0.71
USP28-201ENST00000003302 SETD3Q86TU7 594 aaPredicted RBP10.61□□□□□ -0.71
USP28-201ENST00000003302 SPATA2LQ8IUW3 424 aaPredicted RBP10.61□□□□□ -0.71
USP28-201ENST00000003302 PHACTR4Q8IZ21 702 aa10.61□□□□□ -0.71
USP28-201ENST00000003302 CLYBLQ8N0X4 340 aa10.61□□□□□ -0.71
USP28-201ENST00000003302 BPIFB6Q8NFQ5 453 aa10.61□□□□□ -0.71
USP28-201ENST00000003302 VPS50Q96JG6 964 aa10.61□□□□□ -0.71
USP28-201ENST00000003302 MYRFLQ96LU7 910 aa10.61□□□□□ -0.71
USP28-201ENST00000003302 BOCQ9BWV1 1114 aa10.61□□□□□ -0.71
USP28-201ENST00000003302 GKN1Q9NS71 199 aa10.61□□□□□ -0.71
USP28-201ENST00000003302 GABRQQ9UN88 632 aa10.61□□□□□ -0.71
USP28-201ENST00000003302 FRYLO94915 3013 aa10.61□□□□□ -0.71
USP28-201ENST00000003302 DMDP11532 3685 aa10.61□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms