RNA–Protein interactions for RNA: ENST00000637699.1

CLN3-262, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,228 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-262ENST00000637699 MC1RQ01726 317 aa19.23■□□□□ 0.67
CLN3-262ENST00000637699 MYL5Q02045 173 aa19.23■□□□□ 0.67
CLN3-262ENST00000637699 SEPT6Q14141 434 aa19.23■□□□□ 0.67
CLN3-262ENST00000637699 LACTB2Q53H82 288 aaPredicted RBP19.23■□□□□ 0.67
CLN3-262ENST00000637699 IYDQ6PHW0 289 aa19.23■□□□□ 0.67
CLN3-262ENST00000637699 APTXQ7Z2E3 356 aaKnown RBP19.23■□□□□ 0.67
CLN3-262ENST00000637699 NLRP8Q86W28 1048 aa19.23■□□□□ 0.67
CLN3-262ENST00000637699 SH3KBP1Q96B97 665 aa19.23■□□□□ 0.67
CLN3-262ENST00000637699 TRIT1Q9H3H1 467 aaKnown RBP19.23■□□□□ 0.67
CLN3-262ENST00000637699 KCNK6Q9Y257 313 aa19.23■□□□□ 0.67
CLN3-262ENST00000637699 MAN2B2Q9Y2E5 1009 aa19.23■□□□□ 0.67
CLN3-262ENST00000637699 MRPS18BQ9Y676 258 aaKnown RBP19.23■□□□□ 0.67
CLN3-262ENST00000637699 OAS3Q9Y6K5 1087 aaKnown RBP19.23■□□□□ 0.67
CLN3-262ENST00000637699 CLEC18AA5D8T8 446 aa19.22■□□□□ 0.67
CLN3-262ENST00000637699 PRR19A6NJB7 356 aa19.22■□□□□ 0.67
CLN3-262ENST00000637699 DNAJC6O75061 913 aa19.22■□□□□ 0.67
CLN3-262ENST00000637699 ACP5P13686 325 aa19.22■□□□□ 0.67
CLN3-262ENST00000637699 ZNF30P17039 623 aa19.22■□□□□ 0.67
CLN3-262ENST00000637699 STC1P52823 247 aa19.22■□□□□ 0.67
CLN3-262ENST00000637699 BOLA3Q53S33 107 aa19.22■□□□□ 0.67
CLN3-262ENST00000637699 CLEC18BQ6UXF7 455 aa19.22■□□□□ 0.67
CLN3-262ENST00000637699 ZNF571Q7Z3V5 609 aaPredicted RBP19.22■□□□□ 0.67
CLN3-262ENST00000637699 SLC9B2Q86UD5 537 aa19.22■□□□□ 0.67
CLN3-262ENST00000637699 CLEC18CQ8NCF0 446 aa19.22■□□□□ 0.67
CLN3-262ENST00000637699 GBP4Q96PP9 640 aa19.22■□□□□ 0.67
CLN3-262ENST00000637699 TBC1D10AQ9BXI6 508 aa19.22■□□□□ 0.67
CLN3-262ENST00000637699 HAUS4Q9H6D7 363 aa19.22■□□□□ 0.67
CLN3-262ENST00000637699 CHKBQ9Y259 395 aa19.22■□□□□ 0.67
CLN3-262ENST00000637699 SCINQ9Y6U3 715 aa19.22■□□□□ 0.67
CLN3-262ENST00000637699 TEX15Q9BXT5 2789 aa19.21■□□□□ 0.67
CLN3-262ENST00000637699 LRRC53A6NM62 1247 aa19.21■□□□□ 0.67
CLN3-262ENST00000637699 CLDN7O95471 211 aa19.21■□□□□ 0.67
CLN3-262ENST00000637699 DLGAP3O95886 979 aa19.21■□□□□ 0.67
CLN3-262ENST00000637699 RARAP10276 462 aa19.21■□□□□ 0.67
CLN3-262ENST00000637699 SERPINB6P35237 376 aa19.21■□□□□ 0.67
CLN3-262ENST00000637699 STAT5AP42229 794 aa19.21■□□□□ 0.67
CLN3-262ENST00000637699 IHHQ14623 411 aa19.21■□□□□ 0.67
CLN3-262ENST00000637699 ASIC2Q16515 512 aa19.21■□□□□ 0.67
CLN3-262ENST00000637699 TXNRD3NBQ6F5E7 133 aa19.21■□□□□ 0.67
CLN3-262ENST00000637699 FAM26EQ8N5C1 309 aa19.21■□□□□ 0.67
CLN3-262ENST00000637699 TEX26Q8N6G2 289 aa19.21■□□□□ 0.67
CLN3-262ENST00000637699 POLR1EQ9GZS1 481 aaKnown RBP19.21■□□□□ 0.67
CLN3-262ENST00000637699 PCDH18Q9HCL0 1135 aa19.21■□□□□ 0.67
CLN3-262ENST00000637699 MRPL47Q9HD33 250 aaKnown RBP19.21■□□□□ 0.67
CLN3-262ENST00000637699 VPS18Q9P253 973 aa19.21■□□□□ 0.67
CLN3-262ENST00000637699 CNOT6Q9ULM6 557 aaKnown RBP19.21■□□□□ 0.67
CLN3-262ENST00000637699 MYO6Q9UM54 1294 aa19.21■□□□□ 0.67
CLN3-262ENST00000637699 TP53TG5Q9Y2B4 290 aa19.21■□□□□ 0.67
CLN3-262ENST00000637699 RPS6KL1Q9Y6S9 549 aa19.21■□□□□ 0.67
CLN3-262ENST00000637699 GZMAP12544 262 aa19.2■□□□□ 0.66
CLN3-262ENST00000637699 NR1D1P20393 614 aa19.2■□□□□ 0.66
CLN3-262ENST00000637699 F8A1P23610 371 aa19.2■□□□□ 0.66
CLN3-262ENST00000637699 EPHA4P54764 986 aa19.2■□□□□ 0.66
CLN3-262ENST00000637699 DSC2Q02487 901 aa19.2■□□□□ 0.66
CLN3-262ENST00000637699 FOXM1Q08050 763 aa19.2■□□□□ 0.66
CLN3-262ENST00000637699 KLRB1Q12918 225 aa19.2■□□□□ 0.66
CLN3-262ENST00000637699 SASS6Q6UVJ0 657 aa19.2■□□□□ 0.66
CLN3-262ENST00000637699 RBM43Q6ZSC3 357 aaKnown RBP19.2■□□□□ 0.66
CLN3-262ENST00000637699 LYSMD3Q7Z3D4 306 aa19.2■□□□□ 0.66
CLN3-262ENST00000637699 ESX1Q8N693 406 aa19.2■□□□□ 0.66
CLN3-262ENST00000637699 HERPUD2Q9BSE4 406 aa19.2■□□□□ 0.66
CLN3-262ENST00000637699 LDHAL6BQ9BYZ2 381 aaPredicted RBP19.2■□□□□ 0.66
CLN3-262ENST00000637699 TTLL3Q9Y4R7 772 aa19.2■□□□□ 0.66
CLN3-262ENST00000637699 USP9XQ93008 2570 aaPredicted RBP19.19■□□□□ 0.66
CLN3-262ENST00000637699 A6NCN8 305 aa19.19■□□□□ 0.66
CLN3-262ENST00000637699 K7EM74 188 aa19.19■□□□□ 0.66
CLN3-262ENST00000637699 DDX3XO00571 662 aaKnown RBP eCLIP19.19■□□□□ 0.665e-8■■□□□ 12.6
CLN3-262ENST00000637699 MTSS1O43312 755 aa19.19■□□□□ 0.66
CLN3-262ENST00000637699 F3P13726 295 aa19.19■□□□□ 0.66
CLN3-262ENST00000637699 SLC2A4P14672 509 aa19.19■□□□□ 0.66
CLN3-262ENST00000637699 ZNF28P17035 718 aa19.19■□□□□ 0.66
CLN3-262ENST00000637699 DLSTP36957 453 aa19.19■□□□□ 0.66
CLN3-262ENST00000637699 PLXDC1Q8IUK5 500 aa19.19■□□□□ 0.66
CLN3-262ENST00000637699 WDR24Q96S15 920 aa19.19■□□□□ 0.66
CLN3-262ENST00000637699 ULBP3Q9BZM4 244 aa19.19■□□□□ 0.66
CLN3-262ENST00000637699 HSD3B7Q9H2F3 369 aa19.19■□□□□ 0.66
CLN3-262ENST00000637699 PRDM8Q9NQV8 689 aa19.19■□□□□ 0.66
CLN3-262ENST00000637699 ANO10Q9NW15 660 aa19.19■□□□□ 0.66
CLN3-262ENST00000637699 SIDT1Q9NXL6 827 aaKnown RBP19.19■□□□□ 0.66
CLN3-262ENST00000637699 CPNE7Q9UBL6 633 aa19.19■□□□□ 0.66
CLN3-262ENST00000637699 KCTD3Q9Y597 815 aa19.19■□□□□ 0.66
CLN3-262ENST00000637699 PCDHB3Q9Y5E6 796 aa19.19■□□□□ 0.66
CLN3-262ENST00000637699 KCNMB2Q9Y691 235 aa19.19■□□□□ 0.66
CLN3-262ENST00000637699 KIR2DS5A0A0G2JLQ3 304 aa19.18■□□□□ 0.66
CLN3-262ENST00000637699 A0A0G2JNG1 304 aa19.18■□□□□ 0.66
CLN3-262ENST00000637699 FADS2P1A8MWK0 482 aa19.18■□□□□ 0.66
CLN3-262ENST00000637699 KIR2DS3K7RE56 304 aa19.18■□□□□ 0.66
CLN3-262ENST00000637699 GFERP55789 205 aa19.18■□□□□ 0.66
CLN3-262ENST00000637699 MMRN1Q13201 1228 aa19.18■□□□□ 0.66
CLN3-262ENST00000637699 ERV3-1Q14264 604 aa19.18■□□□□ 0.66
CLN3-262ENST00000637699 KRT81Q14533 505 aa19.18■□□□□ 0.66
CLN3-262ENST00000637699 KIR2DS5Q14953 304 aa19.18■□□□□ 0.66
CLN3-262ENST00000637699 CRTC2Q53ET0 693 aaPredicted RBP19.18■□□□□ 0.66
CLN3-262ENST00000637699 E4F1Q66K89 784 aaPredicted RBP19.18■□□□□ 0.66
CLN3-262ENST00000637699 TEX19Q8NA77 164 aa19.18■□□□□ 0.66
CLN3-262ENST00000637699 LPCAT1Q8NF37 534 aa19.18■□□□□ 0.66
CLN3-262ENST00000637699 MIB2Q96AX9 1013 aa19.18■□□□□ 0.66
CLN3-262ENST00000637699 TDRD1Q9BXT4 1180 aaKnown RBP19.18■□□□□ 0.66
CLN3-262ENST00000637699 RMI1Q9H9A7 625 aa19.18■□□□□ 0.66
CLN3-262ENST00000637699 DNPEPQ9ULA0 475 aa19.18■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 75.2 ms