RNA–Protein interactions for RNA: ENST00000636907.1

CLN3-252, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,679 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-252ENST00000636907 SETMARQ53H47 684 aaPredicted RBP16.76■□□□□ 0.27
CLN3-252ENST00000636907 AGAP9Q5VTM2 703 aa16.76■□□□□ 0.27
CLN3-252ENST00000636907 EGFLAMQ63HQ2 1017 aa16.76■□□□□ 0.27
CLN3-252ENST00000636907 ZYG11AQ6WRX3 759 aa16.76■□□□□ 0.27
CLN3-252ENST00000636907 CERS6Q6ZMG9 384 aa16.76■□□□□ 0.27
CLN3-252ENST00000636907 TMIEQ8NEW7 156 aa16.76■□□□□ 0.27
CLN3-252ENST00000636907 RDH11Q8TC12 318 aa16.76■□□□□ 0.27
CLN3-252ENST00000636907 CCDC97Q96F63 343 aaPredicted RBP16.76■□□□□ 0.27
CLN3-252ENST00000636907 FAM161BQ96MY7 647 aa16.76■□□□□ 0.27
CLN3-252ENST00000636907 P2RY12Q9H244 342 aa16.76■□□□□ 0.27
CLN3-252ENST00000636907 CACNA2D2Q9NY47 1150 aa16.76■□□□□ 0.27
CLN3-252ENST00000636907 MID2Q9UJV3 735 aa16.76■□□□□ 0.27
CLN3-252ENST00000636907 PPM1HQ9ULR3 514 aa16.76■□□□□ 0.27
CLN3-252ENST00000636907 FAM50BQ9Y247 325 aa16.76■□□□□ 0.27
CLN3-252ENST00000636907 A0A1W2PPC1 479 aa16.75■□□□□ 0.27
CLN3-252ENST00000636907 GRXCR2A6NFK2 248 aa16.75■□□□□ 0.27
CLN3-252ENST00000636907 NIPSNAP2O75323 286 aa16.75■□□□□ 0.27
CLN3-252ENST00000636907 RALBP11234 206 aa16.75■□□□□ 0.27
CLN3-252ENST00000636907 ACRV1P26436 265 aa16.75■□□□□ 0.27
CLN3-252ENST00000636907 SLC26A3P40879 764 aa16.75■□□□□ 0.27
CLN3-252ENST00000636907 RGS19P49795 217 aa16.75■□□□□ 0.27
CLN3-252ENST00000636907 KPNA2P52292 529 aaKnown RBP16.75■□□□□ 0.27
CLN3-252ENST00000636907 ADARP55265 1226 aaKnown RBP16.75■□□□□ 0.27
CLN3-252ENST00000636907 OCRLQ01968 901 aa16.75■□□□□ 0.27
CLN3-252ENST00000636907 RALGDSQ12967 914 aa16.75■□□□□ 0.27
CLN3-252ENST00000636907 PDAP1Q13442 181 aaKnown RBP16.75■□□□□ 0.27
CLN3-252ENST00000636907 ITGA9Q13797 1035 aa16.75■□□□□ 0.27
CLN3-252ENST00000636907 ITIH4Q14624 930 aa16.75■□□□□ 0.27
CLN3-252ENST00000636907 AAK1Q2M2I8 961 aa16.75■□□□□ 0.27
CLN3-252ENST00000636907 TECRLQ5HYJ1 363 aa16.75■□□□□ 0.27
CLN3-252ENST00000636907 DPPA4Q7L190 304 aa16.75■□□□□ 0.27
CLN3-252ENST00000636907 PIP4K2CQ8TBX8 421 aa16.75■□□□□ 0.27
CLN3-252ENST00000636907 CSGALNACT1Q8TDX6 532 aa16.75■□□□□ 0.27
CLN3-252ENST00000636907 ARRDC3Q96B67 414 aa16.75■□□□□ 0.27
CLN3-252ENST00000636907 PLEKHG4BQ96PX9 1271 aa16.75■□□□□ 0.27
CLN3-252ENST00000636907 FAM129BQ96TA1 746 aa16.75■□□□□ 0.27
CLN3-252ENST00000636907 MRPL57Q9BQC6 102 aaKnown RBP16.75■□□□□ 0.27
CLN3-252ENST00000636907 C20orf27Q9GZN8 174 aa16.75■□□□□ 0.27
CLN3-252ENST00000636907 MRPL46Q9H2W6 279 aaKnown RBP16.75■□□□□ 0.27
CLN3-252ENST00000636907 TAS2R13Q9NYV9 303 aa16.75■□□□□ 0.27
CLN3-252ENST00000636907 GALPQ9UBC7 116 aa16.75■□□□□ 0.27
CLN3-252ENST00000636907 CRLS1Q9UJA2 301 aa16.75■□□□□ 0.27
CLN3-252ENST00000636907 TICRRQ7Z2Z1 1910 aa16.75■□□□□ 0.27
CLN3-252ENST00000636907 PRMT5O14744 637 aaPredicted RBP16.75■□□□□ 0.27
CLN3-252ENST00000636907 ESR1P03372 595 aa16.75■□□□□ 0.27
CLN3-252ENST00000636907 SERPINE1P05121 402 aa16.75■□□□□ 0.27
CLN3-252ENST00000636907 ZNF37AP17032 561 aaPredicted RBP16.75■□□□□ 0.27
CLN3-252ENST00000636907 NFKBIAP25963 317 aa16.75■□□□□ 0.27
CLN3-252ENST00000636907 PPARGP37231 505 aaPredicted RBP16.75■□□□□ 0.27
CLN3-252ENST00000636907 GALK1P51570 392 aa16.75■□□□□ 0.27
CLN3-252ENST00000636907 GPR33Q49SQ1 333 aa16.75■□□□□ 0.27
CLN3-252ENST00000636907 C6orf89Q6UWU4 347 aa16.75■□□□□ 0.27
CLN3-252ENST00000636907 HSD11B1LQ7Z5J1 315 aa16.75■□□□□ 0.27
CLN3-252ENST00000636907 ANKS4BQ8N8V4 417 aa16.75■□□□□ 0.27
CLN3-252ENST00000636907 OR6Y1Q8NGX8 325 aa16.75■□□□□ 0.27
CLN3-252ENST00000636907 ERLEC1Q96DZ1 483 aa16.75■□□□□ 0.27
CLN3-252ENST00000636907 C7orf26Q96N11 449 aa16.75■□□□□ 0.27
CLN3-252ENST00000636907 GPR21Q99679 349 aa16.75■□□□□ 0.27
CLN3-252ENST00000636907 BOCQ9BWV1 1114 aa16.75■□□□□ 0.27
CLN3-252ENST00000636907 OXSMQ9NWU1 459 aa16.75■□□□□ 0.27
CLN3-252ENST00000636907 PKD2L2Q9NZM6 624 aa16.75■□□□□ 0.27
CLN3-252ENST00000636907 CD84Q9UIB8 345 aa16.75■□□□□ 0.27
CLN3-252ENST00000636907 COLQQ9Y215 455 aaPredicted RBP16.75■□□□□ 0.27
CLN3-252ENST00000636907 AGAP14A8MT82 685 aa16.74■□□□□ 0.27
CLN3-252ENST00000636907 ITM2AO43736 263 aa16.74■□□□□ 0.27
CLN3-252ENST00000636907 EPHX1P07099 455 aa16.74■□□□□ 0.27
CLN3-252ENST00000636907 ZNF7P17097 686 aaPredicted RBP16.74■□□□□ 0.27
CLN3-252ENST00000636907 RPS3P23396 243 aaKnown RBP eCLIP16.74■□□□□ 0.276e-6■□□□□ 10.6
CLN3-252ENST00000636907 ITGB7P26010 798 aa16.74■□□□□ 0.27
CLN3-252ENST00000636907 MMP12P39900 470 aa16.74■□□□□ 0.27
CLN3-252ENST00000636907 HNRNPH2P55795 449 aaKnown RBP16.74■□□□□ 0.27
CLN3-252ENST00000636907 ACAP2Q15057 778 aa16.74■□□□□ 0.27
CLN3-252ENST00000636907 LYPLAL1Q5VWZ2 237 aa16.74■□□□□ 0.27
CLN3-252ENST00000636907 ZDHHC20Q5W0Z9 365 aa16.74■□□□□ 0.27
CLN3-252ENST00000636907 KLC3Q6P597 504 aa16.74■□□□□ 0.27
CLN3-252ENST00000636907 PAQR3Q6TCH7 311 aa16.74■□□□□ 0.27
CLN3-252ENST00000636907 NUDT18Q6ZVK8 323 aa16.74■□□□□ 0.27
CLN3-252ENST00000636907 NXPE1Q8N323 547 aa16.74■□□□□ 0.27
CLN3-252ENST00000636907 SGF29Q96ES7 293 aa16.74■□□□□ 0.27
CLN3-252ENST00000636907 TTC1Q99614 292 aa16.74■□□□□ 0.27
CLN3-252ENST00000636907 P2RY13Q9BPV8 354 aa16.74■□□□□ 0.27
CLN3-252ENST00000636907 NPHS2Q9NP85 383 aa16.74■□□□□ 0.27
CLN3-252ENST00000636907 PRSS16Q9NQE7 514 aa16.74■□□□□ 0.27
CLN3-252ENST00000636907 KLHL14Q9P2G3 628 aa16.74■□□□□ 0.27
CLN3-252ENST00000636907 SUN2Q9UH99 717 aa16.74■□□□□ 0.27
CLN3-252ENST00000636907 COMMD10Q9Y6G5 202 aa16.74■□□□□ 0.27
CLN3-252ENST00000636907 OAS3Q9Y6K5 1087 aaKnown RBP16.74■□□□□ 0.27
CLN3-252ENST00000636907 C2CD4DB7Z1M9 353 aa16.73■□□□□ 0.27
CLN3-252ENST00000636907 SOX1O00570 391 aaPredicted RBP16.73■□□□□ 0.27
CLN3-252ENST00000636907 DLX3O60479 287 aa16.73■□□□□ 0.27
CLN3-252ENST00000636907 TRIM13O60858 407 aa16.73■□□□□ 0.27
CLN3-252ENST00000636907 VPS26AO75436 327 aa16.73■□□□□ 0.27
CLN3-252ENST00000636907 LYPLA1O75608 230 aaPredicted RBP16.73■□□□□ 0.27
CLN3-252ENST00000636907 CD1DP15813 335 aa16.73■□□□□ 0.27
CLN3-252ENST00000636907 CD9P21926 228 aa16.73■□□□□ 0.27
CLN3-252ENST00000636907 GRK2P25098 689 aa16.73■□□□□ 0.27
CLN3-252ENST00000636907 SLC1A6P48664 564 aa16.73■□□□□ 0.27
CLN3-252ENST00000636907 IFT88Q13099 833 aa16.73■□□□□ 0.27
CLN3-252ENST00000636907 ATP13A5Q4VNC0 1218 aa16.73■□□□□ 0.27
CLN3-252ENST00000636907 ERAP2Q6P179 960 aa16.73■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms