RNA–Protein interactions for RNA: ENST00000631321.1

LINC00540-203, long intergenic non-protein coding RNA 540, humanhuman

TSL 2 BASIC

Gene LINC00540, Length 2,412 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-203ENST00000631321 ANKS6Q68DC2 871 aa12.7□□□□□ -0.38
LINC00540-203ENST00000631321 GPR152Q8TDT2 470 aa12.7□□□□□ -0.38
LINC00540-203ENST00000631321 LINC01599Q8WXQ3 324 aa12.7□□□□□ -0.38
LINC00540-203ENST00000631321 PPWD1Q96BP3 646 aaKnown RBP12.7□□□□□ -0.38
LINC00540-203ENST00000631321 TUBGCP3Q96CW5 907 aa12.7□□□□□ -0.38
LINC00540-203ENST00000631321 LRRC58Q96CX6 371 aa12.7□□□□□ -0.38
LINC00540-203ENST00000631321 TRIM54Q9BYV2 358 aa12.7□□□□□ -0.38
LINC00540-203ENST00000631321 MAGEH1Q9H213 219 aa12.7□□□□□ -0.38
LINC00540-203ENST00000631321 IKZF3Q9UKT9 509 aa12.7□□□□□ -0.38
LINC00540-203ENST00000631321 RNF112Q9ULX5 631 aa12.7□□□□□ -0.38
LINC00540-203ENST00000631321 A0A1B0GTL3 188 aa12.7□□□□□ -0.38
LINC00540-203ENST00000631321 TRIM64CA6NLI5 447 aa12.7□□□□□ -0.38
LINC00540-203ENST00000631321 SYCE1LA8MT33 242 aa12.7□□□□□ -0.38
LINC00540-203ENST00000631321 SUPT3HB4E1H0 165 aa12.7□□□□□ -0.38
LINC00540-203ENST00000631321 DLGAP1O14490 977 aa12.7□□□□□ -0.38
LINC00540-203ENST00000631321 AKAP10O43572 662 aa12.7□□□□□ -0.38
LINC00540-203ENST00000631321 SUPT3HO75486 399 aa12.7□□□□□ -0.38
LINC00540-203ENST00000631321 ECI2O75521 394 aa12.7□□□□□ -0.38
LINC00540-203ENST00000631321 LINC00032P0C843 101 aa12.7□□□□□ -0.38
LINC00540-203ENST00000631321 PIRTP0C851 137 aa12.7□□□□□ -0.38
LINC00540-203ENST00000631321 PRSS56P0CW18 603 aa12.7□□□□□ -0.38
LINC00540-203ENST00000631321 CKMT2P17540 419 aa12.7□□□□□ -0.38
LINC00540-203ENST00000631321 CDH2P19022 906 aaPredicted RBP12.7□□□□□ -0.38
LINC00540-203ENST00000631321 CD9P21926 228 aa12.7□□□□□ -0.38
LINC00540-203ENST00000631321 ZNF157P51786 506 aaPredicted RBP12.7□□□□□ -0.38
LINC00540-203ENST00000631321 RPS6KA3P51812 740 aa12.7□□□□□ -0.38
LINC00540-203ENST00000631321 NME5P56597 212 aa12.7□□□□□ -0.38
LINC00540-203ENST00000631321 RAD51Q06609 339 aa12.7□□□□□ -0.38
LINC00540-203ENST00000631321 GEN1Q17RS7 908 aa12.7□□□□□ -0.38
LINC00540-203ENST00000631321 XKR7Q5GH72 579 aa12.7□□□□□ -0.38
LINC00540-203ENST00000631321 EFL1Q7Z2Z2 1120 aaKnown RBP12.7□□□□□ -0.38
LINC00540-203ENST00000631321 BBS5Q8N3I7 341 aa12.7□□□□□ -0.38
LINC00540-203ENST00000631321 UPF1Q92900 1129 aaKnown RBP eCLIP12.7□□□□□ -0.38
LINC00540-203ENST00000631321 FUBP1Q96AE4 644 aaKnown RBP12.7□□□□□ -0.38
LINC00540-203ENST00000631321 MYRFLQ96LU7 910 aa12.7□□□□□ -0.38
LINC00540-203ENST00000631321 PSKH2Q96QS6 385 aa12.7□□□□□ -0.38
LINC00540-203ENST00000631321 CCT7Q99832 543 aa12.7□□□□□ -0.38
LINC00540-203ENST00000631321 TRMT13Q9NUP7 481 aaKnown RBP12.7□□□□□ -0.38
LINC00540-203ENST00000631321 SEPT3Q9UH03 358 aa12.7□□□□□ -0.38
LINC00540-203ENST00000631321 PRG3Q9Y2Y8 225 aaPredicted RBP12.7□□□□□ -0.38
LINC00540-203ENST00000631321 SPO11Q9Y5K1 396 aa12.7□□□□□ -0.38
LINC00540-203ENST00000631321 DNAH12Q6ZR08 3092 aa12.7□□□□□ -0.38
LINC00540-203ENST00000631321 A0A1W2PP18 115 aa12.69□□□□□ -0.38
LINC00540-203ENST00000631321 MYCNP04198 464 aaPredicted RBP12.69□□□□□ -0.38
LINC00540-203ENST00000631321 C7P10643 843 aa12.69□□□□□ -0.38
LINC00540-203ENST00000631321 ZFP36L2P47974 494 aaKnown RBP12.69□□□□□ -0.38
LINC00540-203ENST00000631321 RCAN2Q14206 197 aa12.69□□□□□ -0.38
LINC00540-203ENST00000631321 CYTH1Q15438 398 aa12.69□□□□□ -0.38
LINC00540-203ENST00000631321 TAF1AQ15573 450 aaPredicted RBP12.69□□□□□ -0.38
LINC00540-203ENST00000631321 TBCELQ5QJ74 424 aa12.69□□□□□ -0.38
LINC00540-203ENST00000631321 TXNDC11Q6PKC3 985 aa12.69□□□□□ -0.38
LINC00540-203ENST00000631321 CAMK1DQ8IU85 385 aa12.69□□□□□ -0.38
LINC00540-203ENST00000631321 EPHX4Q8IUS5 362 aa12.69□□□□□ -0.38
LINC00540-203ENST00000631321 ADGRG5Q8IZF4 528 aa12.69□□□□□ -0.38
LINC00540-203ENST00000631321 NKAPQ8N5F7 415 aaKnown RBP12.69□□□□□ -0.38
LINC00540-203ENST00000631321 FAM110BQ8TC76 370 aa12.69□□□□□ -0.38
LINC00540-203ENST00000631321 TMEM125Q96AQ2 219 aa12.69□□□□□ -0.38
LINC00540-203ENST00000631321 RMND5BQ96G75 393 aaPredicted RBP12.69□□□□□ -0.38
LINC00540-203ENST00000631321 NSMCE3Q96MG7 304 aa12.69□□□□□ -0.38
LINC00540-203ENST00000631321 BRINP2Q9C0B6 783 aa12.69□□□□□ -0.38
LINC00540-203ENST00000631321 IL1RL2Q9HB29 575 aa12.69□□□□□ -0.38
LINC00540-203ENST00000631321 C8orf4Q9NR00 106 aa12.69□□□□□ -0.38
LINC00540-203ENST00000631321 AIG1Q9NVV5 245 aa12.69□□□□□ -0.38
LINC00540-203ENST00000631321 TMEM45AQ9NWC5 275 aa12.69□□□□□ -0.38
LINC00540-203ENST00000631321 ATXN10Q9UBB4 475 aa12.69□□□□□ -0.38
LINC00540-203ENST00000631321 SLC8A2Q9UPR5 921 aa12.69□□□□□ -0.38
LINC00540-203ENST00000631321 BTRCQ9Y297 605 aa12.69□□□□□ -0.38
LINC00540-203ENST00000631321 ARIH1Q9Y4X5 557 aaPredicted RBP12.69□□□□□ -0.38
LINC00540-203ENST00000631321 KLHL33A6NCF5 533 aa12.69□□□□□ -0.38
LINC00540-203ENST00000631321 CCDC160A6NGH7 325 aa12.69□□□□□ -0.38
LINC00540-203ENST00000631321 F5H5T6 163 aa12.69□□□□□ -0.38
LINC00540-203ENST00000631321 PLOD2O00469 737 aa12.69□□□□□ -0.38
LINC00540-203ENST00000631321 ARPC2O15144 300 aa12.69□□□□□ -0.38
LINC00540-203ENST00000631321 SOAT2O75908 522 aa12.69□□□□□ -0.38
LINC00540-203ENST00000631321 TMCC1O94876 653 aa12.69□□□□□ -0.38
LINC00540-203ENST00000631321 BMP10O95393 424 aa12.69□□□□□ -0.38
LINC00540-203ENST00000631321 GPIP06744 558 aa12.69□□□□□ -0.38
LINC00540-203ENST00000631321 CR2P20023 1033 aa12.69□□□□□ -0.38
LINC00540-203ENST00000631321 IL10P22301 178 aa12.69□□□□□ -0.38
LINC00540-203ENST00000631321 FMO4P31512 558 aa12.69□□□□□ -0.38
LINC00540-203ENST00000631321 SLC5A2P31639 672 aa12.69□□□□□ -0.38
LINC00540-203ENST00000631321 GNA12Q03113 381 aa12.69□□□□□ -0.38
LINC00540-203ENST00000631321 CAPRIN1Q14444 709 aaKnown RBP12.69□□□□□ -0.38
LINC00540-203ENST00000631321 TSNQ15631 228 aaKnown RBP12.69□□□□□ -0.38
LINC00540-203ENST00000631321 KCTD21Q4G0X4 260 aa12.69□□□□□ -0.38
LINC00540-203ENST00000631321 KRT80Q6KB66 452 aa12.69□□□□□ -0.38
LINC00540-203ENST00000631321 TRAF7Q6Q0C0 670 aa12.69□□□□□ -0.38
LINC00540-203ENST00000631321 PTRH1Q86Y79 214 aaKnown RBP12.69□□□□□ -0.38
LINC00540-203ENST00000631321 SPPL2CQ8IUH8 684 aa12.69□□□□□ -0.38
LINC00540-203ENST00000631321 LGI2Q8N0V4 545 aa12.69□□□□□ -0.38
LINC00540-203ENST00000631321 FIBCD1Q8N539 461 aa12.69□□□□□ -0.38
LINC00540-203ENST00000631321 ZNF512Q96ME7 567 aaPredicted RBP12.69□□□□□ -0.38
LINC00540-203ENST00000631321 CLK4Q9HAZ1 481 aaKnown RBP12.69□□□□□ -0.38
LINC00540-203ENST00000631321 TMCO1Q9UM00 188 aa12.69□□□□□ -0.38
LINC00540-203ENST00000631321 A0A0D9SEW6 157 aa12.68□□□□□ -0.38
LINC00540-203ENST00000631321 TYW5A2RUC4 315 aaKnown RBP12.68□□□□□ -0.38
LINC00540-203ENST00000631321 ASPDHA6ND91 283 aa12.68□□□□□ -0.38
LINC00540-203ENST00000631321 TRIM64A6NGJ6 449 aa12.68□□□□□ -0.38
LINC00540-203ENST00000631321 H3BSA7 217 aa12.68□□□□□ -0.38
LINC00540-203ENST00000631321 EEDO75530 441 aaKnown RBP12.68□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 55.2 ms