RNA–Protein interactions for RNA: ENST00000611481.1

LINC00540-201, long intergenic non-protein coding RNA 540, humanhuman

TSL 4

Gene LINC00540, Length 588 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-201ENST00000611481 FOXG1P55316 489 aaPredicted RBP4.54□□□□□ -1.68
LINC00540-201ENST00000611481 POLE2P56282 527 aa4.54□□□□□ -1.68
LINC00540-201ENST00000611481 CTXN1P60606 82 aa4.54□□□□□ -1.68
LINC00540-201ENST00000611481 ASIC1P78348 528 aa4.54□□□□□ -1.68
LINC00540-201ENST00000611481 SRSF2Q01130 221 aaKnown RBP4.54□□□□□ -1.68
LINC00540-201ENST00000611481 KDSRQ06136 332 aa4.54□□□□□ -1.68
LINC00540-201ENST00000611481 HLXQ14774 488 aaPredicted RBP4.54□□□□□ -1.68
LINC00540-201ENST00000611481 TGIF1Q15583 401 aa4.54□□□□□ -1.68
LINC00540-201ENST00000611481 PGS1Q32NB8 556 aa4.54□□□□□ -1.68
LINC00540-201ENST00000611481 ANO6Q4KMQ2 910 aa4.54□□□□□ -1.68
LINC00540-201ENST00000611481 KCNT1Q5JUK3 1230 aa4.54□□□□□ -1.68
LINC00540-201ENST00000611481 C1QTNF12Q5T7M4 302 aa4.54□□□□□ -1.68
LINC00540-201ENST00000611481 NOTUMQ6P988 496 aa4.54□□□□□ -1.68
LINC00540-201ENST00000611481 TIPARPQ7Z3E1 657 aaKnown RBP4.54□□□□□ -1.68
LINC00540-201ENST00000611481 YTHDF3Q7Z739 585 aaKnown RBP4.54□□□□□ -1.68
LINC00540-201ENST00000611481 CDR2LQ86X02 465 aaPredicted RBP4.54□□□□□ -1.68
LINC00540-201ENST00000611481 IQCA1Q86XH1 822 aa4.54□□□□□ -1.68
LINC00540-201ENST00000611481 TBC1D10CQ8IV04 446 aa4.54□□□□□ -1.68
LINC00540-201ENST00000611481 EFCAB13Q8IY85 973 aa4.54□□□□□ -1.68
LINC00540-201ENST00000611481 MAB21L3Q8N8X9 362 aa4.54□□□□□ -1.68
LINC00540-201ENST00000611481 OSCP1Q8WVF1 389 aa4.54□□□□□ -1.68
LINC00540-201ENST00000611481 LRTOMTQ8WZ04 291 aa4.54□□□□□ -1.68
LINC00540-201ENST00000611481 ARHGAP45Q92619 1136 aa4.54□□□□□ -1.68
LINC00540-201ENST00000611481 ESR2Q92731 530 aa4.54□□□□□ -1.68
LINC00540-201ENST00000611481 PBKQ96KB5 322 aa4.54□□□□□ -1.68
LINC00540-201ENST00000611481 UBXN10Q96LJ8 280 aa4.54□□□□□ -1.68
LINC00540-201ENST00000611481 LURAP1Q96LR2 239 aa4.54□□□□□ -1.68
LINC00540-201ENST00000611481 SLC46A1Q96NT5 459 aa4.54□□□□□ -1.68
LINC00540-201ENST00000611481 PGLYRP2Q96PD5 576 aa4.54□□□□□ -1.68
LINC00540-201ENST00000611481 GCNAQ96QF7 691 aa4.54□□□□□ -1.68
LINC00540-201ENST00000611481 SLC26A6Q9BXS9 759 aa4.54□□□□□ -1.68
LINC00540-201ENST00000611481 ADGRE3Q9BY15 652 aa4.54□□□□□ -1.68
LINC00540-201ENST00000611481 B3GNT5Q9BYG0 378 aa4.54□□□□□ -1.68
LINC00540-201ENST00000611481 CXCL16Q9H2A7 254 aa4.54□□□□□ -1.68
LINC00540-201ENST00000611481 TMEM245Q9H330 911 aa4.54□□□□□ -1.68
LINC00540-201ENST00000611481 KIF9Q9HAQ2 790 aa4.54□□□□□ -1.68
LINC00540-201ENST00000611481 BLOC1S4Q9NUP1 217 aa4.54□□□□□ -1.68
LINC00540-201ENST00000611481 TDP1Q9NUW8 608 aa4.54□□□□□ -1.68
LINC00540-201ENST00000611481 CDC23Q9UJX2 597 aa4.54□□□□□ -1.68
LINC00540-201ENST00000611481 PCDHA6Q9UN73 950 aa4.54□□□□□ -1.68
LINC00540-201ENST00000611481 CRYL1Q9Y2S2 319 aa4.54□□□□□ -1.68
LINC00540-201ENST00000611481 TMEM98Q9Y2Y6 226 aa4.54□□□□□ -1.68
LINC00540-201ENST00000611481 PCDHA10Q9Y5I2 948 aa4.54□□□□□ -1.68
LINC00540-201ENST00000611481 ANK1P16157 1881 aa4.54□□□□□ -1.68
LINC00540-201ENST00000611481 NEDD4P46934 1319 aa4.53□□□□□ -1.68
LINC00540-201ENST00000611481 ZNF638Q14966 1978 aaKnown RBP4.53□□□□□ -1.68
LINC00540-201ENST00000611481 A0A1B0GTQ1 180 aa4.53□□□□□ -1.68
LINC00540-201ENST00000611481 A0A1W2PNU3 283 aaPredicted RBP4.53□□□□□ -1.68
LINC00540-201ENST00000611481 A0A1W2PQF6 199 aa4.53□□□□□ -1.68
LINC00540-201ENST00000611481 TMEM150BA6NC51 233 aa4.53□□□□□ -1.68
LINC00540-201ENST00000611481 MYMKA6NI61 221 aa4.53□□□□□ -1.68
LINC00540-201ENST00000611481 VWC2LB2RUY7 222 aa4.53□□□□□ -1.68
LINC00540-201ENST00000611481 H7C4K7 107 aa4.53□□□□□ -1.68
LINC00540-201ENST00000611481 TMEM189-UBE2V1I3L0A0 370 aa4.53□□□□□ -1.68
LINC00540-201ENST00000611481 FOXN3O00409 490 aaPredicted RBP4.53□□□□□ -1.68
LINC00540-201ENST00000611481 TOR1BO14657 336 aa4.53□□□□□ -1.68
LINC00540-201ENST00000611481 PTGESO14684 152 aa4.53□□□□□ -1.68
LINC00540-201ENST00000611481 ADAMTS3O15072 1205 aa4.53□□□□□ -1.68
LINC00540-201ENST00000611481 TSPAN1O60635 241 aa4.53□□□□□ -1.68
LINC00540-201ENST00000611481 DTNBO60941 627 aa4.53□□□□□ -1.68
LINC00540-201ENST00000611481 SOAT2O75908 522 aa4.53□□□□□ -1.68
LINC00540-201ENST00000611481 KAT7O95251 611 aa4.53□□□□□ -1.68
LINC00540-201ENST00000611481 VNN2O95498 520 aa4.53□□□□□ -1.68
LINC00540-201ENST00000611481 NTN1O95631 604 aa4.53□□□□□ -1.68
LINC00540-201ENST00000611481 HNRNPCP07910 306 aaKnown RBP eCLIP4.53□□□□□ -1.68
LINC00540-201ENST00000611481 DHRS4L1P0CG22 281 aa4.53□□□□□ -1.68
LINC00540-201ENST00000611481 MTHFD1P11586 935 aaKnown RBP4.53□□□□□ -1.68
LINC00540-201ENST00000611481 CKMT2P17540 419 aa4.53□□□□□ -1.68
LINC00540-201ENST00000611481 DRD4P21917 467 aa4.53□□□□□ -1.68
LINC00540-201ENST00000611481 CDC25CP30307 473 aa4.53□□□□□ -1.68
LINC00540-201ENST00000611481 SLC6A4P31645 630 aa4.53□□□□□ -1.68
LINC00540-201ENST00000611481 CCKBRP32239 447 aa4.53□□□□□ -1.68
LINC00540-201ENST00000611481 MTNR1BP49286 362 aa4.53□□□□□ -1.68
LINC00540-201ENST00000611481 CLCNKBP51801 687 aa4.53□□□□□ -1.68
LINC00540-201ENST00000611481 E2F1Q01094 437 aa4.53□□□□□ -1.68
LINC00540-201ENST00000611481 POLD3Q15054 466 aaPredicted RBP4.53□□□□□ -1.68
LINC00540-201ENST00000611481 CNN3Q15417 329 aaKnown RBP4.53□□□□□ -1.68
LINC00540-201ENST00000611481 SMTNL2Q2TAL5 461 aa4.53□□□□□ -1.68
LINC00540-201ENST00000611481 CEP55Q53EZ4 464 aa4.53□□□□□ -1.68
LINC00540-201ENST00000611481 FAM209BQ5JX69 171 aa4.53□□□□□ -1.68
LINC00540-201ENST00000611481 SPATA1Q5VX52 437 aa4.53□□□□□ -1.68
LINC00540-201ENST00000611481 CEP85Q6P2H3 762 aa4.53□□□□□ -1.68
LINC00540-201ENST00000611481 CD300LGQ6UXG3 332 aa4.53□□□□□ -1.68
LINC00540-201ENST00000611481 TECPR1Q7Z6L1 1165 aa4.53□□□□□ -1.68
LINC00540-201ENST00000611481 TBC1D1Q86TI0 1168 aaPredicted RBP4.53□□□□□ -1.68
LINC00540-201ENST00000611481 CREBRFQ8IUR6 639 aa4.53□□□□□ -1.68
LINC00540-201ENST00000611481 TTC30BQ8N4P2 665 aa4.53□□□□□ -1.68
LINC00540-201ENST00000611481 TMEM57Q8N5G2 664 aa4.53□□□□□ -1.68
LINC00540-201ENST00000611481 CADM4Q8NFZ8 388 aa4.53□□□□□ -1.68
LINC00540-201ENST00000611481 IPO4Q8TEX9 1081 aaKnown RBP4.53□□□□□ -1.68
LINC00540-201ENST00000611481 HTR3CQ8WXA8 447 aa4.53□□□□□ -1.68
LINC00540-201ENST00000611481 PSMG2Q969U7 264 aa4.53□□□□□ -1.68
LINC00540-201ENST00000611481 KIAA1191Q96A73 305 aa4.53□□□□□ -1.68
LINC00540-201ENST00000611481 CCDC51Q96ER9 411 aa4.53□□□□□ -1.68
LINC00540-201ENST00000611481 C7orf25Q9BPX7 421 aa4.53□□□□□ -1.68
LINC00540-201ENST00000611481 LRRC27Q9C0I9 530 aa4.53□□□□□ -1.68
LINC00540-201ENST00000611481 BTBD1Q9H0C5 482 aa4.53□□□□□ -1.68
LINC00540-201ENST00000611481 LINC00597Q9H2U6 94 aa4.53□□□□□ -1.68
LINC00540-201ENST00000611481 PSTPIP2Q9H939 334 aa4.53□□□□□ -1.68
LINC00540-201ENST00000611481 WSB2Q9NYS7 404 aaPredicted RBP4.53□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms