RNA–Protein interactions for RNA: ENST00000599543.3

PNKP-213, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 3

Gene PNKP, Length 986 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-213ENST00000599543 PCDH9Q9HC56 1237 aa18.62■□□□□ 0.57
PNKP-213ENST00000599543 SEPT10Q9P0V9 454 aa18.62■□□□□ 0.57
PNKP-213ENST00000599543 RPL26L1Q9UNX3 145 aaKnown RBP18.62■□□□□ 0.57
PNKP-213ENST00000599543 ALG6Q9Y672 507 aa18.62■□□□□ 0.57
PNKP-213ENST00000599543 BOD1L1Q8NFC6 3051 aa18.61■□□□□ 0.57
PNKP-213ENST00000599543 A0A0A6YYK5 440 aaPredicted RBP18.61■□□□□ 0.57
PNKP-213ENST00000599543 MACROD2A1Z1Q3 448 aa18.61■□□□□ 0.57
PNKP-213ENST00000599543 LRRD1A4D1F6 860 aa18.61■□□□□ 0.57
PNKP-213ENST00000599543 INPP4BO15327 924 aa18.61■□□□□ 0.57
PNKP-213ENST00000599543 CCZ1BP86790 482 aa18.61■□□□□ 0.57
PNKP-213ENST00000599543 CCZ1P86791 482 aaPredicted RBP18.61■□□□□ 0.57
PNKP-213ENST00000599543 LRP8Q14114 963 aa18.61■□□□□ 0.57
PNKP-213ENST00000599543 LY6DQ14210 128 aa18.61■□□□□ 0.57
PNKP-213ENST00000599543 IHHQ14623 411 aa18.61■□□□□ 0.57
PNKP-213ENST00000599543 TGIF1Q15583 401 aa18.61■□□□□ 0.57
PNKP-213ENST00000599543 PYCR3Q53H96 274 aa18.61■□□□□ 0.57
PNKP-213ENST00000599543 TMEM164Q5U3C3 297 aa18.61■□□□□ 0.57
PNKP-213ENST00000599543 USP53Q70EK8 1073 aa18.61■□□□□ 0.57
PNKP-213ENST00000599543 NLRP8Q86W28 1048 aa18.61■□□□□ 0.57
PNKP-213ENST00000599543 CCDC13Q8IYE1 715 aa18.61■□□□□ 0.57
PNKP-213ENST00000599543 PQLC3Q8N755 202 aa18.61■□□□□ 0.57
PNKP-213ENST00000599543 ARRDC2Q8TBH0 407 aa18.61■□□□□ 0.57
PNKP-213ENST00000599543 RNF25Q96BH1 459 aaPredicted RBP18.61■□□□□ 0.57
PNKP-213ENST00000599543 RIOK2Q9BVS4 552 aaKnown RBP18.61■□□□□ 0.57
PNKP-213ENST00000599543 ZMYND15Q9H091 742 aa18.61■□□□□ 0.57
PNKP-213ENST00000599543 PLEKHM1Q9Y4G2 1056 aa18.61■□□□□ 0.57
PNKP-213ENST00000599543 ADGRG1Q9Y653 693 aa18.61■□□□□ 0.57
PNKP-213ENST00000599543 C1orf232A0A0U1RR37 186 aa18.6■□□□□ 0.57
PNKP-213ENST00000599543 HGSO14964 777 aaPredicted RBP18.6■□□□□ 0.57
PNKP-213ENST00000599543 CLDN7O95471 211 aa18.6■□□□□ 0.57
PNKP-213ENST00000599543 ASMTLO95671 621 aa18.6■□□□□ 0.57
PNKP-213ENST00000599543 PRLP01236 227 aa18.6■□□□□ 0.57
PNKP-213ENST00000599543 KDELR1P24390 212 aa18.6■□□□□ 0.57
PNKP-213ENST00000599543 ETV5P41161 510 aa18.6■□□□□ 0.57
PNKP-213ENST00000599543 HADHBP55084 474 aaKnown RBP18.6■□□□□ 0.57
PNKP-213ENST00000599543 NIPAL4Q0D2K0 466 aa18.6■□□□□ 0.57
PNKP-213ENST00000599543 C16orf72Q14CZ0 275 aa18.6■□□□□ 0.57
PNKP-213ENST00000599543 DAAM2Q86T65 1068 aa18.6■□□□□ 0.57
PNKP-213ENST00000599543 RAVER1Q8IY67 606 aaKnown RBP18.6■□□□□ 0.57
PNKP-213ENST00000599543 RCBTB1Q8NDN9 531 aa18.6■□□□□ 0.57
PNKP-213ENST00000599543 USP7Q93009 1102 aa18.6■□□□□ 0.57
PNKP-213ENST00000599543 LYSMD1Q96S90 227 aa18.6■□□□□ 0.57
PNKP-213ENST00000599543 AGAP2Q99490 1192 aa18.6■□□□□ 0.57
PNKP-213ENST00000599543 DTLQ9NZJ0 730 aa18.6■□□□□ 0.57
PNKP-213ENST00000599543 FOXJ2Q9P0K8 574 aa18.6■□□□□ 0.57
PNKP-213ENST00000599543 PCDHB11Q9Y5F2 797 aa18.6■□□□□ 0.57
PNKP-213ENST00000599543 SDK2Q58EX2 2172 aa18.59■□□□□ 0.57
PNKP-213ENST00000599543 IGHV5-10-1A0A0J9YXX1 117 aa18.59■□□□□ 0.57
PNKP-213ENST00000599543 KCNK1O00180 336 aa18.59■□□□□ 0.57
PNKP-213ENST00000599543 PPM1DO15297 605 aa18.59■□□□□ 0.57
PNKP-213ENST00000599543 PJA2O43164 708 aa18.59■□□□□ 0.57
PNKP-213ENST00000599543 PLA2G2AP14555 144 aa18.59■□□□□ 0.57
PNKP-213ENST00000599543 CD82P27701 267 aa18.59■□□□□ 0.57
PNKP-213ENST00000599543 CD1CP29017 333 aa18.59■□□□□ 0.57
PNKP-213ENST00000599543 CD86P42081 329 aa18.59■□□□□ 0.57
PNKP-213ENST00000599543 SLC10A2Q12908 348 aaPredicted RBP18.59■□□□□ 0.57
PNKP-213ENST00000599543 NKAIN2Q5VXU1 208 aa18.59■□□□□ 0.57
PNKP-213ENST00000599543 RHOT1Q8IXI2 618 aa18.59■□□□□ 0.57
PNKP-213ENST00000599543 CCHCR1Q8TD31 782 aa18.59■□□□□ 0.57
PNKP-213ENST00000599543 TRAF3IP1Q8TDR0 691 aaPredicted RBP18.59■□□□□ 0.57
PNKP-213ENST00000599543 KRT35Q92764 455 aa18.59■□□□□ 0.57
PNKP-213ENST00000599543 COX14Q96I36 57 aa18.59■□□□□ 0.57
PNKP-213ENST00000599543 CCDC74BQ96LY2 380 aa18.59■□□□□ 0.57
PNKP-213ENST00000599543 RNF157Q96PX1 679 aa18.59■□□□□ 0.57
PNKP-213ENST00000599543 ADGRE3Q9BY15 652 aa18.59■□□□□ 0.57
PNKP-213ENST00000599543 KCNK4Q9NYG8 393 aa18.59■□□□□ 0.57
PNKP-213ENST00000599543 PKD2L2Q9NZM6 624 aa18.59■□□□□ 0.57
PNKP-213ENST00000599543 VPS18Q9P253 973 aa18.59■□□□□ 0.57
PNKP-213ENST00000599543 GRID2IPA4D2P6 1211 aa18.58■□□□□ 0.56
PNKP-213ENST00000599543 C3orf70A6NLC5 250 aaPredicted RBP18.58■□□□□ 0.56
PNKP-213ENST00000599543 C9orf172C9J069 976 aa18.58■□□□□ 0.56
PNKP-213ENST00000599543 JCHAINP01591 159 aa18.58■□□□□ 0.56
PNKP-213ENST00000599543 ATP1A1P05023 1023 aaKnown RBP18.58■□□□□ 0.56
PNKP-213ENST00000599543 SLC1A1P43005 524 aa18.58■□□□□ 0.56
PNKP-213ENST00000599543 PPM1FP49593 454 aaPredicted RBP18.58■□□□□ 0.56
PNKP-213ENST00000599543 PPIDQ08752 370 aaKnown RBP18.58■□□□□ 0.56
PNKP-213ENST00000599543 TRA2AQ13595 282 aaKnown RBP eCLIP18.58■□□□□ 0.56
PNKP-213ENST00000599543 MANEAQ5SRI9 462 aa18.58■□□□□ 0.56
PNKP-213ENST00000599543 FAM182AQ5T1J6 154 aa18.58■□□□□ 0.56
PNKP-213ENST00000599543 C11orf63Q6NUN7 778 aa18.58■□□□□ 0.56
PNKP-213ENST00000599543 ZNF574Q6ZN55 896 aaPredicted RBP18.58■□□□□ 0.56
PNKP-213ENST00000599543 ZFAND4Q86XD8 727 aa18.58■□□□□ 0.56
PNKP-213ENST00000599543 OR4D9Q8NGE8 314 aa18.58■□□□□ 0.56
PNKP-213ENST00000599543 DPYSL5Q9BPU6 564 aa18.58■□□□□ 0.56
PNKP-213ENST00000599543 MLPHQ9BV36 600 aaPredicted RBP18.58■□□□□ 0.56
PNKP-213ENST00000599543 SEMA4CQ9C0C4 833 aa18.58■□□□□ 0.56
PNKP-213ENST00000599543 ZNHIT2Q9UHR6 403 aa18.58■□□□□ 0.56
PNKP-213ENST00000599543 HEY1Q9Y5J3 304 aa18.58■□□□□ 0.56
PNKP-213ENST00000599543 SPTA1P02549 2419 aa18.57■□□□□ 0.56
PNKP-213ENST00000599543 IGHV1OR21-1A0A087WYE8 117 aa18.57■□□□□ 0.56
PNKP-213ENST00000599543 ANKRD66B4E2M5 251 aa18.57■□□□□ 0.56
PNKP-213ENST00000599543 ARHGAP6O43182 974 aa18.57■□□□□ 0.56
PNKP-213ENST00000599543 EFSO43281 561 aa18.57■□□□□ 0.56
PNKP-213ENST00000599543 MMP2P08253 660 aa18.57■□□□□ 0.56
PNKP-213ENST00000599543 CCL4P13236 92 aa18.57■□□□□ 0.56
PNKP-213ENST00000599543 FASLGP48023 281 aa18.57■□□□□ 0.56
PNKP-213ENST00000599543 SPINT3P49223 89 aa18.57■□□□□ 0.56
PNKP-213ENST00000599543 LIMK2P53671 638 aa18.57■□□□□ 0.56
PNKP-213ENST00000599543 GPLD1P80108 840 aa18.57■□□□□ 0.56
PNKP-213ENST00000599543 IFI35P80217 286 aaPredicted RBP18.57■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 43.6 ms