RNA–Protein interactions for RNA: ENST00000597968.1

TRIM28-211, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 504 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-211ENST00000597968 CTTNBP2NLQ9P2B4 639 aa13.51□□□□□ -0.25
TRIM28-211ENST00000597968 TUBD1Q9UJT1 453 aa13.51□□□□□ -0.25
TRIM28-211ENST00000597968 UNC13CQ8NB66 2214 aa13.51□□□□□ -0.25
TRIM28-211ENST00000597968 BOD1L1Q8NFC6 3051 aa13.5□□□□□ -0.25
TRIM28-211ENST00000597968 C1orf232A0A0U1RR37 186 aa13.5□□□□□ -0.25
TRIM28-211ENST00000597968 SSU72P8A0A1W2PR75 194 aa13.5□□□□□ -0.25
TRIM28-211ENST00000597968 CLDN7O95471 211 aa13.5□□□□□ -0.25
TRIM28-211ENST00000597968 CCL4P13236 92 aa13.5□□□□□ -0.25
TRIM28-211ENST00000597968 ZFXP17010 805 aaPredicted RBP13.5□□□□□ -0.25
TRIM28-211ENST00000597968 ARHGAP25P42331 645 aa13.5□□□□□ -0.25
TRIM28-211ENST00000597968 DCDC1P59894 354 aa13.5□□□□□ -0.25
TRIM28-211ENST00000597968 IFI35P80217 286 aaPredicted RBP13.5□□□□□ -0.25
TRIM28-211ENST00000597968 DSC2Q02487 901 aa13.5□□□□□ -0.25
TRIM28-211ENST00000597968 HHEXQ03014 270 aa13.5□□□□□ -0.25
TRIM28-211ENST00000597968 PPIDQ08752 370 aaKnown RBP13.5□□□□□ -0.25
TRIM28-211ENST00000597968 TRIM14Q14142 442 aa13.5□□□□□ -0.25
TRIM28-211ENST00000597968 SLC18A3Q16572 532 aa13.5□□□□□ -0.25
TRIM28-211ENST00000597968 IYDQ6PHW0 289 aa13.5□□□□□ -0.25
TRIM28-211ENST00000597968 DOK6Q6PKX4 331 aa13.5□□□□□ -0.25
TRIM28-211ENST00000597968 LYSMD3Q7Z3D4 306 aa13.5□□□□□ -0.25
TRIM28-211ENST00000597968 ZFAND4Q86XD8 727 aa13.5□□□□□ -0.25
TRIM28-211ENST00000597968 SLC37A2Q8TED4 501 aa13.5□□□□□ -0.25
TRIM28-211ENST00000597968 NKD1Q969G9 470 aa13.5□□□□□ -0.25
TRIM28-211ENST00000597968 ANP32EQ9BTT0 268 aa13.5□□□□□ -0.25
TRIM28-211ENST00000597968 ZSCAN5AQ9BUG6 496 aa13.5□□□□□ -0.25
TRIM28-211ENST00000597968 RIOK2Q9BVS4 552 aaKnown RBP13.5□□□□□ -0.25
TRIM28-211ENST00000597968 FAM117AQ9C073 453 aa13.5□□□□□ -0.25
TRIM28-211ENST00000597968 TRIT1Q9H3H1 467 aaKnown RBP13.5□□□□□ -0.25
TRIM28-211ENST00000597968 FAM83DQ9H4H8 585 aa13.5□□□□□ -0.25
TRIM28-211ENST00000597968 UCK1Q9HA47 277 aa13.5□□□□□ -0.25
TRIM28-211ENST00000597968 FBXO8Q9NRD0 319 aa13.5□□□□□ -0.25
TRIM28-211ENST00000597968 CD84Q9UIB8 345 aa13.5□□□□□ -0.25
TRIM28-211ENST00000597968 CHKBQ9Y259 395 aa13.5□□□□□ -0.25
TRIM28-211ENST00000597968 TMEM98Q9Y2Y6 226 aa13.5□□□□□ -0.25
TRIM28-211ENST00000597968 HEMK1Q9Y5R4 338 aaPredicted RBP13.5□□□□□ -0.25
TRIM28-211ENST00000597968 TOX3O15405 576 aaPredicted RBP13.49□□□□□ -0.25
TRIM28-211ENST00000597968 NUAK1O60285 661 aa13.49□□□□□ -0.25
TRIM28-211ENST00000597968 ASMTLO95671 621 aa13.49□□□□□ -0.25
TRIM28-211ENST00000597968 GYPCP04921 128 aa13.49□□□□□ -0.25
TRIM28-211ENST00000597968 F3P13726 295 aa13.49□□□□□ -0.25
TRIM28-211ENST00000597968 PTMSP20962 102 aa13.49□□□□□ -0.25
TRIM28-211ENST00000597968 MAP4P27816 1152 aaKnown RBP13.49□□□□□ -0.25
TRIM28-211ENST00000597968 CRTC2Q53ET0 693 aaPredicted RBP13.49□□□□□ -0.25
TRIM28-211ENST00000597968 CEACAM20Q6UY09 585 aa13.49□□□□□ -0.25
TRIM28-211ENST00000597968 ARHGAP22Q7Z5H3 698 aa13.49□□□□□ -0.25
TRIM28-211ENST00000597968 PHYKPLQ8IUZ5 450 aa13.49□□□□□ -0.25
TRIM28-211ENST00000597968 EXD3Q8N9H8 876 aa13.49□□□□□ -0.25
TRIM28-211ENST00000597968 RCBTB1Q8NDN9 531 aa13.49□□□□□ -0.25
TRIM28-211ENST00000597968 PTCD2Q8WV60 388 aaKnown RBP13.49□□□□□ -0.25
TRIM28-211ENST00000597968 PATE1Q8WXA2 126 aa13.49□□□□□ -0.25
TRIM28-211ENST00000597968 RNF157Q96PX1 679 aa13.49□□□□□ -0.25
TRIM28-211ENST00000597968 CLMPQ9H6B4 373 aa13.49□□□□□ -0.25
TRIM28-211ENST00000597968 SUDS3Q9H7L9 328 aaPredicted RBP13.49□□□□□ -0.25
TRIM28-211ENST00000597968 MAGEE1Q9HCI5 957 aa13.49□□□□□ -0.25
TRIM28-211ENST00000597968 GEMIN8Q9NWZ8 242 aaKnown RBP13.49□□□□□ -0.25
TRIM28-211ENST00000597968 DTLQ9NZJ0 730 aa13.49□□□□□ -0.25
TRIM28-211ENST00000597968 IFNKQ9P0W0 207 aa13.49□□□□□ -0.25
TRIM28-211ENST00000597968 ZNHIT2Q9UHR6 403 aa13.49□□□□□ -0.25
TRIM28-211ENST00000597968 CNOT6Q9ULM6 557 aaKnown RBP13.49□□□□□ -0.25
TRIM28-211ENST00000597968 TTLL3Q9Y4R7 772 aa13.49□□□□□ -0.25
TRIM28-211ENST00000597968 AHCTF1Q8WYP5 2266 aa13.48□□□□□ -0.25
TRIM28-211ENST00000597968 ARHGEF17Q96PE2 2063 aaPredicted RBP13.48□□□□□ -0.25
TRIM28-211ENST00000597968 A6NCN8 305 aa13.48□□□□□ -0.25
TRIM28-211ENST00000597968 LILRA5A6NI73 299 aa13.48□□□□□ -0.25
TRIM28-211ENST00000597968 SLC28A2O43868 658 aa13.48□□□□□ -0.25
TRIM28-211ENST00000597968 PPFIA2O75334 1257 aa13.48□□□□□ -0.25
TRIM28-211ENST00000597968 WISP1O95388 367 aa13.48□□□□□ -0.25
TRIM28-211ENST00000597968 HLA-DQB2P05538 268 aa13.48□□□□□ -0.25
TRIM28-211ENST00000597968 ANKRD34CP0C6C1 535 aa13.48□□□□□ -0.25
TRIM28-211ENST00000597968 TMEM253P0C7T8 217 aa13.48□□□□□ -0.25
TRIM28-211ENST00000597968 KDELR1P24390 212 aa13.48□□□□□ -0.25
TRIM28-211ENST00000597968 CSF2RBP32927 897 aa13.48□□□□□ -0.25
TRIM28-211ENST00000597968 UGT1A3P35503 534 aa13.48□□□□□ -0.25
TRIM28-211ENST00000597968 CSRP3P50461 194 aa13.48□□□□□ -0.25
TRIM28-211ENST00000597968 MC2RQ01718 297 aa13.48□□□□□ -0.25
TRIM28-211ENST00000597968 KCNC4Q03721 635 aa13.48□□□□□ -0.25
TRIM28-211ENST00000597968 NIPAL4Q0D2K0 466 aa13.48□□□□□ -0.25
TRIM28-211ENST00000597968 PDK1Q15118 436 aa13.48□□□□□ -0.25
TRIM28-211ENST00000597968 TBR1Q16650 682 aa13.48□□□□□ -0.25
TRIM28-211ENST00000597968 QPCTQ16769 361 aa13.48□□□□□ -0.25
TRIM28-211ENST00000597968 LRRC38Q5VT99 294 aa13.48□□□□□ -0.25
TRIM28-211ENST00000597968 BZW1Q7L1Q6 419 aaKnown RBP13.48□□□□□ -0.25
TRIM28-211ENST00000597968 CHST15Q7LFX5 561 aaPredicted RBP13.48□□□□□ -0.25
TRIM28-211ENST00000597968 RBM12BQ8IXT5 1001 aaKnown RBP13.48□□□□□ -0.25
TRIM28-211ENST00000597968 IL22RA1Q8N6P7 574 aa13.48□□□□□ -0.25
TRIM28-211ENST00000597968 PQLC3Q8N755 202 aa13.48□□□□□ -0.25
TRIM28-211ENST00000597968 BMPERQ8N8U9 685 aa13.48□□□□□ -0.25
TRIM28-211ENST00000597968 CCNYQ8ND76 341 aa13.48□□□□□ -0.25
TRIM28-211ENST00000597968 LPCAT1Q8NF37 534 aa13.48□□□□□ -0.25
TRIM28-211ENST00000597968 DTX3LQ8TDB6 740 aa13.48□□□□□ -0.25
TRIM28-211ENST00000597968 EXTL1Q92935 676 aa13.48□□□□□ -0.25
TRIM28-211ENST00000597968 WDR24Q96S15 920 aa13.48□□□□□ -0.25
TRIM28-211ENST00000597968 AGAP2Q99490 1192 aa13.48□□□□□ -0.25
TRIM28-211ENST00000597968 SLC12A9Q9BXP2 914 aa13.48□□□□□ -0.25
TRIM28-211ENST00000597968 ZFYVE1Q9HBF4 777 aa13.48□□□□□ -0.25
TRIM28-211ENST00000597968 TRIM39Q9HCM9 518 aa13.48□□□□□ -0.25
TRIM28-211ENST00000597968 WDR70Q9NW82 654 aa13.48□□□□□ -0.25
TRIM28-211ENST00000597968 SLC39A1Q9NY26 324 aa13.48□□□□□ -0.25
TRIM28-211ENST00000597968 PPP1R12AO14974 1030 aaPredicted RBP13.47□□□□□ -0.25
TRIM28-211ENST00000597968 GRID2O43424 1007 aa13.47□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 46.7 ms