RNA–Protein interactions for RNA: ENST00000597618.5

TRIM28-210, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 609 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-210ENST00000597618 SHANK1Q9Y566 2161 aa10.04□□□□□ -0.8
TRIM28-210ENST00000597618 OR5K4A6NMS3 321 aa10.03□□□□□ -0.8
TRIM28-210ENST00000597618 EIF3CLB5ME19 914 aaKnown RBP10.03□□□□□ -0.8
TRIM28-210ENST00000597618 EEF2KO00418 725 aaKnown RBP10.03□□□□□ -0.8
TRIM28-210ENST00000597618 LDLRP01130 860 aa10.03□□□□□ -0.8
TRIM28-210ENST00000597618 C9P02748 559 aa10.03□□□□□ -0.8
TRIM28-210ENST00000597618 CALB1P05937 261 aa10.03□□□□□ -0.8
TRIM28-210ENST00000597618 F3P13726 295 aa10.03□□□□□ -0.8
TRIM28-210ENST00000597618 GFERP55789 205 aa10.03□□□□□ -0.8
TRIM28-210ENST00000597618 PTP4A2Q12974 167 aa10.03□□□□□ -0.8
TRIM28-210ENST00000597618 LBRQ14739 615 aaKnown RBP10.03□□□□□ -0.8
TRIM28-210ENST00000597618 UGT8Q16880 541 aa10.03□□□□□ -0.8
TRIM28-210ENST00000597618 TPD52L1Q16890 204 aaPredicted RBP10.03□□□□□ -0.8
TRIM28-210ENST00000597618 LARP7Q4G0J3 582 aaKnown RBP eCLIP10.03□□□□□ -0.8
TRIM28-210ENST00000597618 MIIPQ5JXC2 388 aa10.03□□□□□ -0.8
TRIM28-210ENST00000597618 ARHGAP36Q6ZRI8 547 aa10.03□□□□□ -0.8
TRIM28-210ENST00000597618 ZNF765Q7L2R6 523 aa10.03□□□□□ -0.8
TRIM28-210ENST00000597618 TECPR1Q7Z6L1 1165 aa10.03□□□□□ -0.8
TRIM28-210ENST00000597618 TSPAN33Q86UF1 283 aa10.03□□□□□ -0.8
TRIM28-210ENST00000597618 ARHGAP12Q8IWW6 846 aa10.03□□□□□ -0.8
TRIM28-210ENST00000597618 CT55Q8WUE5 264 aa10.03□□□□□ -0.8
TRIM28-210ENST00000597618 RNF31Q96EP0 1072 aa10.03□□□□□ -0.8
TRIM28-210ENST00000597618 SCRN2Q96FV2 425 aa10.03□□□□□ -0.8
TRIM28-210ENST00000597618 COX14Q96I36 57 aa10.03□□□□□ -0.8
TRIM28-210ENST00000597618 NUDCD1Q96RS6 583 aa10.03□□□□□ -0.8
TRIM28-210ENST00000597618 EIF3CQ99613 913 aaKnown RBP10.03□□□□□ -0.8
TRIM28-210ENST00000597618 CNPY3Q9BT09 278 aa10.03□□□□□ -0.8
TRIM28-210ENST00000597618 TBC1D10AQ9BXI6 508 aa10.03□□□□□ -0.8
TRIM28-210ENST00000597618 BRD8Q9H0E9 1235 aa10.03□□□□□ -0.8
TRIM28-210ENST00000597618 ABCG8Q9H221 673 aa10.03□□□□□ -0.8
TRIM28-210ENST00000597618 ZNF106Q9H2Y7 1883 aaKnown RBP10.03□□□□□ -0.8
TRIM28-210ENST00000597618 UCK1Q9HA47 277 aa10.03□□□□□ -0.8
TRIM28-210ENST00000597618 SLAMF7Q9NQ25 335 aa10.03□□□□□ -0.8
TRIM28-210ENST00000597618 LHX9Q9NQ69 397 aa10.03□□□□□ -0.8
TRIM28-210ENST00000597618 ACSS2Q9NR19 701 aa10.03□□□□□ -0.8
TRIM28-210ENST00000597618 VPS18Q9P253 973 aa10.03□□□□□ -0.8
TRIM28-210ENST00000597618 MAP10Q9P2G4 905 aa10.03□□□□□ -0.8
TRIM28-210ENST00000597618 CPNE7Q9UBL6 633 aa10.03□□□□□ -0.8
TRIM28-210ENST00000597618 ZNHIT2Q9UHR6 403 aa10.03□□□□□ -0.8
TRIM28-210ENST00000597618 CD84Q9UIB8 345 aa10.03□□□□□ -0.8
TRIM28-210ENST00000597618 ERRFI1Q9UJM3 462 aaPredicted RBP10.03□□□□□ -0.8
TRIM28-210ENST00000597618 ZNF451Q9Y4E5 1061 aa10.03□□□□□ -0.8
TRIM28-210ENST00000597618 PCDHGB7Q9Y5F8 929 aa10.03□□□□□ -0.8
TRIM28-210ENST00000597618 ADGRG4Q8IZF6 3080 aa10.02□□□□□ -0.81
TRIM28-210ENST00000597618 TTC24A2A3L6 582 aaPredicted RBP10.02□□□□□ -0.81
TRIM28-210ENST00000597618 SIGLEC16A6NMB1 481 aa10.02□□□□□ -0.81
TRIM28-210ENST00000597618 PES1O00541 588 aaKnown RBP10.02□□□□□ -0.81
TRIM28-210ENST00000597618 DAPK3O43293 454 aa10.02□□□□□ -0.81
TRIM28-210ENST00000597618 SNX2O60749 519 aa10.02□□□□□ -0.81
TRIM28-210ENST00000597618 DPM1O60762 260 aa10.02□□□□□ -0.81
TRIM28-210ENST00000597618 SPAG6O75602 509 aa10.02□□□□□ -0.81
TRIM28-210ENST00000597618 RASSF9O75901 435 aa10.02□□□□□ -0.81
TRIM28-210ENST00000597618 GFPT2O94808 682 aa10.02□□□□□ -0.81
TRIM28-210ENST00000597618 ASMTLO95671 621 aa10.02□□□□□ -0.81
TRIM28-210ENST00000597618 FGF5P12034 268 aa10.02□□□□□ -0.81
TRIM28-210ENST00000597618 UNGP13051 313 aaPredicted RBP10.02□□□□□ -0.81
TRIM28-210ENST00000597618 ACP5P13686 325 aa10.02□□□□□ -0.81
TRIM28-210ENST00000597618 CHRNB2P17787 502 aa10.02□□□□□ -0.81
TRIM28-210ENST00000597618 SEPHS1P49903 392 aa10.02□□□□□ -0.81
TRIM28-210ENST00000597618 SH3BP2P78314 561 aa10.02□□□□□ -0.81
TRIM28-210ENST00000597618 SLC10A7Q0GE19 358 aa10.02□□□□□ -0.81
TRIM28-210ENST00000597618 TRAF2Q12933 501 aa10.02□□□□□ -0.81
TRIM28-210ENST00000597618 CHRNA6Q15825 494 aa10.02□□□□□ -0.81
TRIM28-210ENST00000597618 PRR30Q53SZ7 412 aaPredicted RBP10.02□□□□□ -0.81
TRIM28-210ENST00000597618 RALGPS1Q5JS13 557 aa10.02□□□□□ -0.81
TRIM28-210ENST00000597618 C1QL3Q5VWW1 255 aa10.02□□□□□ -0.81
TRIM28-210ENST00000597618 CPZQ66K79 652 aa10.02□□□□□ -0.81
TRIM28-210ENST00000597618 LRRC66Q68CR7 880 aa10.02□□□□□ -0.81
TRIM28-210ENST00000597618 JMJD6Q6NYC1 403 aaPredicted RBP10.02□□□□□ -0.81
TRIM28-210ENST00000597618 DNAJC24Q6P3W2 148 aa10.02□□□□□ -0.81
TRIM28-210ENST00000597618 CHST15Q7LFX5 561 aaPredicted RBP10.02□□□□□ -0.81
TRIM28-210ENST00000597618 NLRP8Q86W28 1048 aa10.02□□□□□ -0.81
TRIM28-210ENST00000597618 PPP1R3BQ86XI6 285 aa10.02□□□□□ -0.81
TRIM28-210ENST00000597618 PHF13Q86YI8 300 aaPredicted RBP10.02□□□□□ -0.81
TRIM28-210ENST00000597618 HPS6Q86YV9 775 aa10.02□□□□□ -0.81
TRIM28-210ENST00000597618 PHYKPLQ8IUZ5 450 aa10.02□□□□□ -0.81
TRIM28-210ENST00000597618 SRRM1Q8IYB3 904 aaKnown RBP10.02□□□□□ -0.81
TRIM28-210ENST00000597618 SLC34A3Q8N130 599 aa10.02□□□□□ -0.81
TRIM28-210ENST00000597618 NDUFAF2Q8N183 169 aa10.02□□□□□ -0.81
TRIM28-210ENST00000597618 NPWQ8N729 165 aa10.02□□□□□ -0.81
TRIM28-210ENST00000597618 EXD1Q8NHP7 514 aa10.02□□□□□ -0.81
TRIM28-210ENST00000597618 SCAMP4Q969E2 229 aa10.02□□□□□ -0.81
TRIM28-210ENST00000597618 MOCOSQ96EN8 888 aa10.02□□□□□ -0.81
TRIM28-210ENST00000597618 TCTN2Q96GX1 697 aa10.02□□□□□ -0.81
TRIM28-210ENST00000597618 ELMO2Q96JJ3 720 aa10.02□□□□□ -0.81
TRIM28-210ENST00000597618 C5orf34Q96MH7 638 aa10.02□□□□□ -0.81
TRIM28-210ENST00000597618 MCEEQ96PE7 176 aa10.02□□□□□ -0.81
TRIM28-210ENST00000597618 TGM7Q96PF1 710 aa10.02□□□□□ -0.81
TRIM28-210ENST00000597618 TUBGCP2Q9BSJ2 902 aa10.02□□□□□ -0.81
TRIM28-210ENST00000597618 GPR87Q9BY21 358 aa10.02□□□□□ -0.81
TRIM28-210ENST00000597618 ING2Q9H160 280 aa10.02□□□□□ -0.81
TRIM28-210ENST00000597618 RMI1Q9H9A7 625 aa10.02□□□□□ -0.81
TRIM28-210ENST00000597618 NOD2Q9HC29 1040 aa10.02□□□□□ -0.81
TRIM28-210ENST00000597618 G3BP2Q9UN86 482 aaKnown RBP10.02□□□□□ -0.81
TRIM28-210ENST00000597618 AP4E1Q9UPM8 1137 aa10.02□□□□□ -0.81
TRIM28-210ENST00000597618 KCNK6Q9Y257 313 aa10.02□□□□□ -0.81
TRIM28-210ENST00000597618 SLC5A6Q9Y289 635 aa10.02□□□□□ -0.81
TRIM28-210ENST00000597618 APCP25054 2843 aa10.02□□□□□ -0.81
TRIM28-210ENST00000597618 SETD2Q9BYW2 2564 aaPredicted RBP10.01□□□□□ -0.81
TRIM28-210ENST00000597618 CELSR1Q9NYQ6 3014 aa10.01□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms