RNA–Protein interactions for RNA: ENST00000585941.5

LIG3-205, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,699 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-205ENST00000585941 FAM50BQ9Y247 325 aa14.1□□□□□ -0.15
LIG3-205ENST00000585941 MED16Q9Y2X0 877 aa14.1□□□□□ -0.15
LIG3-205ENST00000585941 TRBV5-4A0A0C4DH59 114 aa14.1□□□□□ -0.15
LIG3-205ENST00000585941 GLYATL1P3A0A0U1RQE8 302 aa14.1□□□□□ -0.15
LIG3-205ENST00000585941 NEMP2A6NFY4 417 aa14.1□□□□□ -0.15
LIG3-205ENST00000585941 GRXCR1A8MXD5 290 aa14.1□□□□□ -0.15
LIG3-205ENST00000585941 SPECC1L-ADORA2AF8WAN1 911 aa14.1□□□□□ -0.15
LIG3-205ENST00000585941 SLC22A2O15244 555 aa14.1□□□□□ -0.15
LIG3-205ENST00000585941 GYG2O15488 501 aa14.1□□□□□ -0.15
LIG3-205ENST00000585941 ADSLP30566 484 aaPredicted RBP14.1□□□□□ -0.15
LIG3-205ENST00000585941 GKP32189 559 aa14.1□□□□□ -0.15
LIG3-205ENST00000585941 SATB1Q01826 763 aa14.1□□□□□ -0.15
LIG3-205ENST00000585941 NFATC2Q13469 925 aa14.1□□□□□ -0.15
LIG3-205ENST00000585941 DHCR24Q15392 516 aa14.1□□□□□ -0.15
LIG3-205ENST00000585941 C9orf50Q5SZB4 431 aa14.1□□□□□ -0.15
LIG3-205ENST00000585941 BRAT1Q6PJG6 821 aa14.1□□□□□ -0.15
LIG3-205ENST00000585941 GDPD4Q6W3E5 623 aa14.1□□□□□ -0.15
LIG3-205ENST00000585941 DPY19L3Q6ZPD9 716 aa14.1□□□□□ -0.15
LIG3-205ENST00000585941 KDM1BQ8NB78 822 aa14.1□□□□□ -0.15
LIG3-205ENST00000585941 ITFG1Q8TB96 612 aa14.1□□□□□ -0.15
LIG3-205ENST00000585941 OSCP1Q8WVF1 389 aa14.1□□□□□ -0.15
LIG3-205ENST00000585941 ASIC4Q96FT7 647 aa14.1□□□□□ -0.15
LIG3-205ENST00000585941 PDLIM5Q96HC4 596 aaKnown RBP14.1□□□□□ -0.15
LIG3-205ENST00000585941 PRR11Q96HE9 360 aaPredicted RBP14.1□□□□□ -0.15
LIG3-205ENST00000585941 LRIG1Q96JA1 1093 aa14.1□□□□□ -0.15
LIG3-205ENST00000585941 ATOH8Q96SQ7 321 aa14.1□□□□□ -0.15
LIG3-205ENST00000585941 ZDHHC6Q9H6R6 413 aa14.1□□□□□ -0.15
LIG3-205ENST00000585941 ASB8Q9H765 288 aa14.1□□□□□ -0.15
LIG3-205ENST00000585941 ZDHHC2Q9UIJ5 367 aa14.1□□□□□ -0.15
LIG3-205ENST00000585941 GNPTGQ9UJJ9 305 aa14.1□□□□□ -0.15
LIG3-205ENST00000585941 CDYLQ9Y232 598 aa14.1□□□□□ -0.15
LIG3-205ENST00000585941 FNDC3AQ9Y2H6 1198 aaKnown RBP14.1□□□□□ -0.15
LIG3-205ENST00000585941 GOLGA8QA0A0J9YX86 632 aa14.09□□□□□ -0.15
LIG3-205ENST00000585941 GOLGA8OA6NCC3 632 aa14.09□□□□□ -0.15
LIG3-205ENST00000585941 GOLGA8NF8WBI6 632 aa14.09□□□□□ -0.15
LIG3-205ENST00000585941 GRID2O43424 1007 aa14.09□□□□□ -0.15
LIG3-205ENST00000585941 CLDN7O95471 211 aa14.09□□□□□ -0.15
LIG3-205ENST00000585941 ENO1P06733 434 aaKnown RBP14.09□□□□□ -0.15
LIG3-205ENST00000585941 ADH5P11766 374 aa14.09□□□□□ -0.15
LIG3-205ENST00000585941 BPIP17213 487 aa14.09□□□□□ -0.15
LIG3-205ENST00000585941 CHRM3P20309 590 aa14.09□□□□□ -0.15
LIG3-205ENST00000585941 KCNA5P22460 613 aa14.09□□□□□ -0.15
LIG3-205ENST00000585941 SP100P23497 879 aaPredicted RBP14.09□□□□□ -0.15
LIG3-205ENST00000585941 PRDX6P30041 224 aa14.09□□□□□ -0.15
LIG3-205ENST00000585941 CBX2Q14781 532 aaPredicted RBP14.09□□□□□ -0.15
LIG3-205ENST00000585941 PTPRRQ15256 657 aa14.09□□□□□ -0.15
LIG3-205ENST00000585941 SETMARQ53H47 684 aaPredicted RBP14.09□□□□□ -0.15
LIG3-205ENST00000585941 CTSL3PQ5NE16 218 aa14.09□□□□□ -0.15
LIG3-205ENST00000585941 ZNF678Q5SXM1 525 aa14.09□□□□□ -0.15
LIG3-205ENST00000585941 CRTC1Q6UUV9 634 aa14.09□□□□□ -0.15
LIG3-205ENST00000585941 FAM151BQ6UXP7 276 aa14.09□□□□□ -0.15
LIG3-205ENST00000585941 ADGRD2Q7Z7M1 963 aa14.09□□□□□ -0.15
LIG3-205ENST00000585941 PACS2Q86VP3 889 aa14.09□□□□□ -0.15
LIG3-205ENST00000585941 SERPINA9Q86WD7 417 aa14.09□□□□□ -0.15
LIG3-205ENST00000585941 TMPRSS6Q8IU80 811 aa14.09□□□□□ -0.15
LIG3-205ENST00000585941 HCAR2Q8TDS4 363 aa14.09□□□□□ -0.15
LIG3-205ENST00000585941 CMTM5Q96DZ9 223 aa14.09□□□□□ -0.15
LIG3-205ENST00000585941 HEPHQ9BQS7 1158 aa14.09□□□□□ -0.15
LIG3-205ENST00000585941 OSBPL1AQ9BXW6 950 aa14.09□□□□□ -0.15
LIG3-205ENST00000585941 C1orf21Q9H246 121 aa14.09□□□□□ -0.15
LIG3-205ENST00000585941 MMADHCQ9H3L0 296 aaPredicted RBP14.09□□□□□ -0.15
LIG3-205ENST00000585941 CYP4F12Q9HCS2 524 aa14.09□□□□□ -0.15
LIG3-205ENST00000585941 IL26Q9NPH9 171 aa14.09□□□□□ -0.15
LIG3-205ENST00000585941 OBP2AQ9NY56 170 aa14.09□□□□□ -0.15
LIG3-205ENST00000585941 SLCO3A1Q9UIG8 710 aa14.09□□□□□ -0.15
LIG3-205ENST00000585941 RNF112Q9ULX5 631 aa14.09□□□□□ -0.15
LIG3-205ENST00000585941 STK38LQ9Y2H1 464 aa14.09□□□□□ -0.15
LIG3-205ENST00000585941 SLC27A6Q9Y2P4 619 aa14.09□□□□□ -0.15
LIG3-205ENST00000585941 DHRS7Q9Y394 339 aa14.09□□□□□ -0.15
LIG3-205ENST00000585941 NPIPB15A6NHN6 443 aaPredicted RBP14.08□□□□□ -0.16
LIG3-205ENST00000585941 PRR5-ARHGAP8B1AHC4 643 aa14.08□□□□□ -0.16
LIG3-205ENST00000585941 GAPDHSO14556 408 aaPredicted RBP14.08□□□□□ -0.16
LIG3-205ENST00000585941 OR1I1O60431 355 aa14.08□□□□□ -0.16
LIG3-205ENST00000585941 CYP17A1P05093 508 aa14.08□□□□□ -0.16
LIG3-205ENST00000585941 NCF2P19878 526 aaPredicted RBP14.08□□□□□ -0.16
LIG3-205ENST00000585941 HNRNPH1P31943 449 aaKnown RBP14.08□□□□□ -0.16
LIG3-205ENST00000585941 DGKGP49619 791 aa14.08□□□□□ -0.16
LIG3-205ENST00000585941 ARHGAP8P85298 464 aa14.08□□□□□ -0.16
LIG3-205ENST00000585941 SHHQ15465 462 aa14.08□□□□□ -0.16
LIG3-205ENST00000585941 OR4D1Q15615 310 aa14.08□□□□□ -0.16
LIG3-205ENST00000585941 SNCBQ16143 134 aa14.08□□□□□ -0.16
LIG3-205ENST00000585941 CRY1Q16526 586 aa14.08□□□□□ -0.16
LIG3-205ENST00000585941 DNAL1Q4LDG9 190 aa14.08□□□□□ -0.16
LIG3-205ENST00000585941 SLC9B1Q4ZJI4 515 aa14.08□□□□□ -0.16
LIG3-205ENST00000585941 SH2D4BQ5SQS7 431 aa14.08□□□□□ -0.16
LIG3-205ENST00000585941 VWA5B1Q5TIE3 1220 aa14.08□□□□□ -0.16
LIG3-205ENST00000585941 PTRHD1Q6GMV3 140 aaKnown RBP14.08□□□□□ -0.16
LIG3-205ENST00000585941 FAM109BQ6ICB4 259 aaPredicted RBP14.08□□□□□ -0.16
LIG3-205ENST00000585941 TXNDC11Q6PKC3 985 aa14.08□□□□□ -0.16
LIG3-205ENST00000585941 Q6ZVU0 165 aa14.08□□□□□ -0.16
LIG3-205ENST00000585941 LONP2Q86WA8 852 aa14.08□□□□□ -0.16
LIG3-205ENST00000585941 ZSWIM9Q86XI8 627 aa14.08□□□□□ -0.16
LIG3-205ENST00000585941 TREML1Q86YW5 311 aa14.08□□□□□ -0.16
LIG3-205ENST00000585941 TEX9Q8N6V9 391 aa14.08□□□□□ -0.16
LIG3-205ENST00000585941 OR2A12Q8NGT7 310 aa14.08□□□□□ -0.16
LIG3-205ENST00000585941 AGR3Q8TD06 166 aa14.08□□□□□ -0.16
LIG3-205ENST00000585941 CD200R1Q8TD46 325 aa14.08□□□□□ -0.16
LIG3-205ENST00000585941 PPP2R3CQ969Q6 453 aa14.08□□□□□ -0.16
LIG3-205ENST00000585941 VOPP1Q96AW1 172 aa14.08□□□□□ -0.16
LIG3-205ENST00000585941 PHF21BQ96EK2 531 aa14.08□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms