RNA–Protein interactions for RNA: ENST00000585740.5

LIG3-204, Transcript of DNA ligase 3, humanhuman

TSL 3

Gene LIG3, Length 887 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-204ENST00000585740 LSM12Q3MHD2 195 aaKnown RBP11.2□□□□□ -0.62
LIG3-204ENST00000585740 UNC50Q53HI1 259 aa11.2□□□□□ -0.62
LIG3-204ENST00000585740 ZDHHC20Q5W0Z9 365 aa11.2□□□□□ -0.62
LIG3-204ENST00000585740 GRAMD4Q6IC98 578 aa11.2□□□□□ -0.62
LIG3-204ENST00000585740 C22orf39Q6P5X5 142 aa11.2□□□□□ -0.62
LIG3-204ENST00000585740 PAQR3Q6TCH7 311 aa11.2□□□□□ -0.62
LIG3-204ENST00000585740 TAS2R42Q7RTR8 314 aa11.2□□□□□ -0.62
LIG3-204ENST00000585740 SNX20Q7Z614 316 aa11.2□□□□□ -0.62
LIG3-204ENST00000585740 CAMK1DQ8IU85 385 aa11.2□□□□□ -0.62
LIG3-204ENST00000585740 HOMEZQ8IX15 550 aa11.2□□□□□ -0.62
LIG3-204ENST00000585740 PLPP6Q8IY26 295 aa11.2□□□□□ -0.62
LIG3-204ENST00000585740 RYBPQ8N488 228 aaPredicted RBP11.2□□□□□ -0.62
LIG3-204ENST00000585740 ENDOVQ8N8Q3 282 aaKnown RBP11.2□□□□□ -0.62
LIG3-204ENST00000585740 TTC16Q8NEE8 873 aa11.2□□□□□ -0.62
LIG3-204ENST00000585740 RP9Q8TA86 221 aaKnown RBP11.2□□□□□ -0.62
LIG3-204ENST00000585740 AGR3Q8TD06 166 aa11.2□□□□□ -0.62
LIG3-204ENST00000585740 PTERQ96BW5 349 aa11.2□□□□□ -0.62
LIG3-204ENST00000585740 PHF21BQ96EK2 531 aa11.2□□□□□ -0.62
LIG3-204ENST00000585740 SAMD11Q96NU1 681 aa11.2□□□□□ -0.62
LIG3-204ENST00000585740 ANKRD27Q96NW4 1050 aa11.2□□□□□ -0.62
LIG3-204ENST00000585740 OR52B2Q96RD2 323 aa11.2□□□□□ -0.62
LIG3-204ENST00000585740 ATOH8Q96SQ7 321 aa11.2□□□□□ -0.62
LIG3-204ENST00000585740 GPR21Q99679 349 aa11.2□□□□□ -0.62
LIG3-204ENST00000585740 SLC2A11Q9BYW1 496 aa11.2□□□□□ -0.62
LIG3-204ENST00000585740 CPEB1Q9BZB8 566 aaKnown RBP11.2□□□□□ -0.62
LIG3-204ENST00000585740 NUF2Q9BZD4 464 aa11.2□□□□□ -0.62
LIG3-204ENST00000585740 TM6SF2Q9BZW4 377 aa11.2□□□□□ -0.62
LIG3-204ENST00000585740 UNKQ9C0B0 810 aaKnown RBP11.2□□□□□ -0.62
LIG3-204ENST00000585740 GSTO2Q9H4Y5 243 aa11.2□□□□□ -0.62
LIG3-204ENST00000585740 DENND2DQ9H6A0 471 aaPredicted RBP11.2□□□□□ -0.62
LIG3-204ENST00000585740 MEAF6Q9HAF1 191 aa11.2□□□□□ -0.62
LIG3-204ENST00000585740 ZFYVE1Q9HBF4 777 aa11.2□□□□□ -0.62
LIG3-204ENST00000585740 CYP4F12Q9HCS2 524 aa11.2□□□□□ -0.62
LIG3-204ENST00000585740 TDP1Q9NUW8 608 aa11.2□□□□□ -0.62
LIG3-204ENST00000585740 ZDHHC7Q9NXF8 308 aa11.2□□□□□ -0.62
LIG3-204ENST00000585740 GNPTGQ9UJJ9 305 aa11.2□□□□□ -0.62
LIG3-204ENST00000585740 RNF112Q9ULX5 631 aa11.2□□□□□ -0.62
LIG3-204ENST00000585740 PLA2G4CQ9UP65 541 aa11.2□□□□□ -0.62
LIG3-204ENST00000585740 PPIL1Q9Y3C6 166 aa11.2□□□□□ -0.62
LIG3-204ENST00000585740 NUP210Q8TEM1 1887 aaPredicted RBP11.2□□□□□ -0.62
LIG3-204ENST00000585740 MYOFQ9NZM1 2061 aa11.2□□□□□ -0.62
LIG3-204ENST00000585740 RGSL1A5PLK6 1076 aa11.19□□□□□ -0.62
LIG3-204ENST00000585740 HIDE1A8MVS5 230 aa11.19□□□□□ -0.62
LIG3-204ENST00000585740 E5RI56 91 aa11.19□□□□□ -0.62
LIG3-204ENST00000585740 K7ERQ8 282 aa11.19□□□□□ -0.62
LIG3-204ENST00000585740 SDHDO14521 159 aa11.19□□□□□ -0.62
LIG3-204ENST00000585740 NEMP1O14524 444 aa11.19□□□□□ -0.62
LIG3-204ENST00000585740 SMAD6O43541 496 aaKnown RBP11.19□□□□□ -0.62
LIG3-204ENST00000585740 DCXO43602 365 aa11.19□□□□□ -0.62
LIG3-204ENST00000585740 PEX11AO75192 247 aa11.19□□□□□ -0.62
LIG3-204ENST00000585740 SUPT7LO94864 414 aa11.19□□□□□ -0.62
LIG3-204ENST00000585740 POP4O95707 220 aaKnown RBP11.19□□□□□ -0.62
LIG3-204ENST00000585740 RHOP08100 348 aa11.19□□□□□ -0.62
LIG3-204ENST00000585740 PABPC1P11940 636 aaKnown RBP11.19□□□□□ -0.62
LIG3-204ENST00000585740 SRCP12931 536 aa11.19□□□□□ -0.62
LIG3-204ENST00000585740 GFAPP14136 432 aa11.19□□□□□ -0.62
LIG3-204ENST00000585740 CTPS1P17812 591 aa11.19□□□□□ -0.62
LIG3-204ENST00000585740 KCNA5P22460 613 aa11.19□□□□□ -0.62
LIG3-204ENST00000585740 PIK3R1P27986 724 aa11.19□□□□□ -0.62
LIG3-204ENST00000585740 SPAM1P38567 509 aa11.19□□□□□ -0.62
LIG3-204ENST00000585740 CCR10P46092 362 aa11.19□□□□□ -0.62
LIG3-204ENST00000585740 IL2P60568 153 aa11.19□□□□□ -0.62
LIG3-204ENST00000585740 CDC16Q13042 620 aa11.19□□□□□ -0.62
LIG3-204ENST00000585740 MAPRE2Q15555 327 aa11.19□□□□□ -0.62
LIG3-204ENST00000585740 PDCD2Q16342 344 aaPredicted RBP11.19□□□□□ -0.62
LIG3-204ENST00000585740 CRY1Q16526 586 aa11.19□□□□□ -0.62
LIG3-204ENST00000585740 MYLK3Q32MK0 819 aa11.19□□□□□ -0.62
LIG3-204ENST00000585740 GPR33Q49SQ1 333 aa11.19□□□□□ -0.62
LIG3-204ENST00000585740 CARD16Q5EG05 197 aa11.19□□□□□ -0.62
LIG3-204ENST00000585740 NXNQ6DKJ4 435 aa11.19□□□□□ -0.62
LIG3-204ENST00000585740 PSAPL1Q6NUJ1 521 aa11.19□□□□□ -0.62
LIG3-204ENST00000585740 USP45Q70EL2 814 aa11.19□□□□□ -0.62
LIG3-204ENST00000585740 EFL1Q7Z2Z2 1120 aaKnown RBP11.19□□□□□ -0.62
LIG3-204ENST00000585740 LYSMD3Q7Z3D4 306 aa11.19□□□□□ -0.62
LIG3-204ENST00000585740 PIANPQ8IYJ0 282 aa11.19□□□□□ -0.62
LIG3-204ENST00000585740 RBFAQ8N0V3 343 aa11.19□□□□□ -0.62
LIG3-204ENST00000585740 CLYBLQ8N0X4 340 aa11.19□□□□□ -0.62
LIG3-204ENST00000585740 FBXO39Q8N4B4 442 aa11.19□□□□□ -0.62
LIG3-204ENST00000585740 PTGR2Q8N8N7 351 aaPredicted RBP11.19□□□□□ -0.62
LIG3-204ENST00000585740 GRIN3AQ8TCU5 1115 aa11.19□□□□□ -0.62
LIG3-204ENST00000585740 MICAL1Q8TDZ2 1067 aa11.19□□□□□ -0.62
LIG3-204ENST00000585740 IRF7Q92985 503 aa11.19□□□□□ -0.62
LIG3-204ENST00000585740 STMN2Q93045 179 aa11.19□□□□□ -0.62
LIG3-204ENST00000585740 BHMTQ93088 406 aa11.19□□□□□ -0.62
LIG3-204ENST00000585740 PDLIM5Q96HC4 596 aaKnown RBP11.19□□□□□ -0.62
LIG3-204ENST00000585740 ZNF641Q96N77 438 aaPredicted RBP11.19□□□□□ -0.62
LIG3-204ENST00000585740 BIRC8Q96P09 236 aa11.19□□□□□ -0.62
LIG3-204ENST00000585740 THTPAQ9BU02 230 aa11.19□□□□□ -0.62
LIG3-204ENST00000585740 P2RY12Q9H244 342 aa11.19□□□□□ -0.62
LIG3-204ENST00000585740 SUV39H2Q9H5I1 410 aa11.19□□□□□ -0.62
LIG3-204ENST00000585740 ZNF576Q9H609 170 aa11.19□□□□□ -0.62
LIG3-204ENST00000585740 ZNF385DQ9H6B1 395 aa11.19□□□□□ -0.62
LIG3-204ENST00000585740 CD248Q9HCU0 757 aa11.19□□□□□ -0.62
LIG3-204ENST00000585740 BPIFA1Q9NP55 256 aa11.19□□□□□ -0.62
LIG3-204ENST00000585740 PFDN4Q9NQP4 134 aa11.19□□□□□ -0.62
LIG3-204ENST00000585740 PLK2Q9NYY3 685 aa11.19□□□□□ -0.62
LIG3-204ENST00000585740 MARK1Q9P0L2 795 aa11.19□□□□□ -0.62
LIG3-204ENST00000585740 CXXC1Q9P0U4 656 aaPredicted RBP11.19□□□□□ -0.62
LIG3-204ENST00000585740 INTS6Q9UL03 887 aaKnown RBP11.19□□□□□ -0.62
LIG3-204ENST00000585740 TRAF6Q9Y4K3 522 aa11.19□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms