RNA–Protein interactions for RNA: ENST00000574029.5

VPS53-216, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4 BASIC

Gene VPS53, Length 585 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-216ENST00000574029 WDR74Q6RFH5 385 aaPredicted RBP20.9■□□□□ 0.94
VPS53-216ENST00000574029 ARHGAP22Q7Z5H3 698 aa20.9■□□□□ 0.94
VPS53-216ENST00000574029 FAM129CQ86XR2 697 aa20.9■□□□□ 0.94
VPS53-216ENST00000574029 ARRDC2Q8TBH0 407 aa20.9■□□□□ 0.94
VPS53-216ENST00000574029 TSGA13Q96PP4 275 aa20.9■□□□□ 0.94
VPS53-216ENST00000574029 TEFMQ96QE5 360 aaKnown RBP20.9■□□□□ 0.94
VPS53-216ENST00000574029 WDR24Q96S15 920 aa20.9■□□□□ 0.94
VPS53-216ENST00000574029 SARS2Q9NP81 518 aaKnown RBP20.9■□□□□ 0.94
VPS53-216ENST00000574029 RBM22Q9NW64 420 aaKnown RBP eCLIP20.9■□□□□ 0.94
VPS53-216ENST00000574029 ZNHIT2Q9UHR6 403 aa20.9■□□□□ 0.94
VPS53-216ENST00000574029 PILRAQ9UKJ1 303 aa20.9■□□□□ 0.94
VPS53-216ENST00000574029 CNOT6Q9ULM6 557 aaKnown RBP20.9■□□□□ 0.94
VPS53-216ENST00000574029 ATP1A1P05023 1023 aaKnown RBP20.89■□□□□ 0.93
VPS53-216ENST00000574029 CCNCP24863 283 aa20.89■□□□□ 0.93
VPS53-216ENST00000574029 RPL26P61254 145 aaKnown RBP20.89■□□□□ 0.93
VPS53-216ENST00000574029 MC2RQ01718 297 aa20.89■□□□□ 0.93
VPS53-216ENST00000574029 HHEXQ03014 270 aa20.89■□□□□ 0.93
VPS53-216ENST00000574029 DPYSL3Q14195 570 aa20.89■□□□□ 0.93
VPS53-216ENST00000574029 IFI16Q16666 785 aaKnown RBP20.89■□□□□ 0.93
VPS53-216ENST00000574029 CHST15Q7LFX5 561 aaPredicted RBP20.89■□□□□ 0.93
VPS53-216ENST00000574029 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP20.89■□□□□ 0.93
VPS53-216ENST00000574029 SYN2Q92777 582 aaPredicted RBP20.89■□□□□ 0.93
VPS53-216ENST00000574029 ZMYND15Q9H091 742 aa20.89■□□□□ 0.93
VPS53-216ENST00000574029 TBC1D29Q9UFV1 150 aa20.89■□□□□ 0.93
VPS53-216ENST00000574029 RPL26L1Q9UNX3 145 aaKnown RBP20.89■□□□□ 0.93
VPS53-216ENST00000574029 PRKAB1Q9Y478 270 aa20.89■□□□□ 0.93
VPS53-216ENST00000574029 OAS3Q9Y6K5 1087 aaKnown RBP20.89■□□□□ 0.93
VPS53-216ENST00000574029 BSNQ9UPA5 3926 aa20.88■□□□□ 0.93
VPS53-216ENST00000574029 A6NCN8 305 aa20.88■□□□□ 0.93
VPS53-216ENST00000574029 MYO1FO00160 1098 aa20.88■□□□□ 0.93
VPS53-216ENST00000574029 CAPN5O15484 640 aaPredicted RBP20.88■□□□□ 0.93
VPS53-216ENST00000574029 CA4P22748 312 aa20.88■□□□□ 0.93
VPS53-216ENST00000574029 NIPAL4Q0D2K0 466 aa20.88■□□□□ 0.93
VPS53-216ENST00000574029 HADHQ16836 314 aaKnown RBP20.88■□□□□ 0.93
VPS53-216ENST00000574029 ATP13A4Q4VNC1 1196 aa20.88■□□□□ 0.93
VPS53-216ENST00000574029 HENMT1Q5T8I9 393 aaKnown RBP20.88■□□□□ 0.93
VPS53-216ENST00000574029 IYDQ6PHW0 289 aa20.88■□□□□ 0.93
VPS53-216ENST00000574029 RTP4Q96DX8 246 aa20.88■□□□□ 0.93
VPS53-216ENST00000574029 RMI1Q9H9A7 625 aa20.88■□□□□ 0.93
VPS53-216ENST00000574029 PCDH9Q9HC56 1237 aa20.88■□□□□ 0.93
VPS53-216ENST00000574029 HAUS2Q9NVX0 235 aa20.88■□□□□ 0.93
VPS53-216ENST00000574029 TUBD1Q9UJT1 453 aa20.88■□□□□ 0.93
VPS53-216ENST00000574029 A0A1W2PQJ5 194 aa20.87■□□□□ 0.93
VPS53-216ENST00000574029 ZNF891A8MT65 544 aaPredicted RBP20.87■□□□□ 0.93
VPS53-216ENST00000574029 FADS2P1A8MWK0 482 aa20.87■□□□□ 0.93
VPS53-216ENST00000574029 HLA-DQB2P05538 268 aa20.87■□□□□ 0.93
VPS53-216ENST00000574029 SPINT3P49223 89 aa20.87■□□□□ 0.93
VPS53-216ENST00000574029 EPHA4P54764 986 aa20.87■□□□□ 0.93
VPS53-216ENST00000574029 POLE2P56282 527 aa20.87■□□□□ 0.93
VPS53-216ENST00000574029 KCNAB2Q13303 367 aa20.87■□□□□ 0.93
VPS53-216ENST00000574029 ANKRD20A8PQ5CZ79 823 aa20.87■□□□□ 0.93
VPS53-216ENST00000574029 SNAP47Q5SQN1 464 aa20.87■□□□□ 0.93
VPS53-216ENST00000574029 LPCAT1Q8NF37 534 aa20.87■□□□□ 0.93
VPS53-216ENST00000574029 SH3KBP1Q96B97 665 aa20.87■□□□□ 0.93
VPS53-216ENST00000574029 SLC45A3Q96JT2 553 aa20.87■□□□□ 0.93
VPS53-216ENST00000574029 CATSPER2Q96P56 530 aa20.87■□□□□ 0.93
VPS53-216ENST00000574029 ZNF670Q9BS34 389 aa20.87■□□□□ 0.93
VPS53-216ENST00000574029 HERPUD2Q9BSE4 406 aa20.87■□□□□ 0.93
VPS53-216ENST00000574029 STN1Q9H668 368 aaKnown RBP20.87■□□□□ 0.93
VPS53-216ENST00000574029 FBXO8Q9NRD0 319 aa20.87■□□□□ 0.93
VPS53-216ENST00000574029 TTLL3Q9Y4R7 772 aa20.87■□□□□ 0.93
VPS53-216ENST00000574029 A0A087X0T9 212 aa20.86■□□□□ 0.93
VPS53-216ENST00000574029 RGSL1A5PLK6 1076 aa20.86■□□□□ 0.93
VPS53-216ENST00000574029 A8MU76 341 aa20.86■□□□□ 0.93
VPS53-216ENST00000574029 SERPINC1P01008 464 aa20.86■□□□□ 0.93
VPS53-216ENST00000574029 SERPING1P05155 500 aa20.86■□□□□ 0.93
VPS53-216ENST00000574029 FAM228BP0C875 321 aa20.86■□□□□ 0.93
VPS53-216ENST00000574029 MAP4P27816 1152 aaKnown RBP20.86■□□□□ 0.93
VPS53-216ENST00000574029 SSR1P43307 286 aaKnown RBP20.86■□□□□ 0.93
VPS53-216ENST00000574029 CCR10P46092 362 aa20.86■□□□□ 0.93
VPS53-216ENST00000574029 PPM1FP49593 454 aaPredicted RBP20.86■□□□□ 0.93
VPS53-216ENST00000574029 NFATC2Q13469 925 aa20.86■□□□□ 0.93
VPS53-216ENST00000574029 IQCB1Q15051 598 aa20.86■□□□□ 0.93
VPS53-216ENST00000574029 LYSMD3Q7Z3D4 306 aa20.86■□□□□ 0.93
VPS53-216ENST00000574029 SLC9B2Q86UD5 537 aa20.86■□□□□ 0.93
VPS53-216ENST00000574029 NLGN4XQ8N0W4 816 aa20.86■□□□□ 0.93
VPS53-216ENST00000574029 NLGN4YQ8NFZ3 816 aaPredicted RBP20.86■□□□□ 0.93
VPS53-216ENST00000574029 ZNF564Q8TBZ8 553 aaPredicted RBP20.86■□□□□ 0.93
VPS53-216ENST00000574029 NCSTNQ92542 709 aa20.86■□□□□ 0.93
VPS53-216ENST00000574029 CTRCQ99895 268 aa20.86■□□□□ 0.93
VPS53-216ENST00000574029 ZPBPQ9BS86 351 aa20.86■□□□□ 0.93
VPS53-216ENST00000574029 FAM83DQ9H4H8 585 aa20.86■□□□□ 0.93
VPS53-216ENST00000574029 KCNK6Q9Y257 313 aa20.86■□□□□ 0.93
VPS53-216ENST00000574029 C1orf232A0A0U1RR37 186 aa20.85■□□□□ 0.93
VPS53-216ENST00000574029 ACP5P13686 325 aa20.85■□□□□ 0.93
VPS53-216ENST00000574029 F3P13726 295 aa20.85■□□□□ 0.93
VPS53-216ENST00000574029 SLC2A4P14672 509 aa20.85■□□□□ 0.93
VPS53-216ENST00000574029 MAN1A1P33908 653 aa20.85■□□□□ 0.93
VPS53-216ENST00000574029 PBX1P40424 430 aa20.85■□□□□ 0.93
VPS53-216ENST00000574029 TLE1Q04724 770 aa20.85■□□□□ 0.93
VPS53-216ENST00000574029 PDK2Q15119 407 aa20.85■□□□□ 0.93
VPS53-216ENST00000574029 QPCTQ16769 361 aa20.85■□□□□ 0.93
VPS53-216ENST00000574029 CEACAM20Q6UY09 585 aa20.85■□□□□ 0.93
VPS53-216ENST00000574029 TIPARPQ7Z3E1 657 aaKnown RBP20.85■□□□□ 0.93
VPS53-216ENST00000574029 KCTD6Q8NC69 237 aa20.85■□□□□ 0.93
VPS53-216ENST00000574029 FAF2Q96CS3 445 aa20.85■□□□□ 0.93
VPS53-216ENST00000574029 LDHAL6BQ9BYZ2 381 aaPredicted RBP20.85■□□□□ 0.93
VPS53-216ENST00000574029 GPN2Q9H9Y4 310 aaPredicted RBP20.85■□□□□ 0.93
VPS53-216ENST00000574029 PKD2L2Q9NZM6 624 aa20.85■□□□□ 0.93
VPS53-216ENST00000574029 TMEM184BQ9Y519 407 aaPredicted RBP20.85■□□□□ 0.93
Retrieved 100 of 20,778 RNA–protein pairs in 75.4 ms