RNA–Protein interactions for RNA: ENST00000572607.1

VPS53-214, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 732 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-214ENST00000572607 DESI2Q9BSY9 194 aa8.07□□□□□ -1.12
VPS53-214ENST00000572607 BOCQ9BWV1 1114 aa8.07□□□□□ -1.12
VPS53-214ENST00000572607 LGR4Q9BXB1 951 aa8.07□□□□□ -1.12
VPS53-214ENST00000572607 HEMGNQ9BXL5 484 aa8.07□□□□□ -1.12
VPS53-214ENST00000572607 TEX101Q9BY14 249 aa8.07□□□□□ -1.12
VPS53-214ENST00000572607 TSGA10Q9BZW7 698 aa8.07□□□□□ -1.12
VPS53-214ENST00000572607 CLPBQ9H078 707 aa8.07□□□□□ -1.12
VPS53-214ENST00000572607 ABCG8Q9H221 673 aa8.07□□□□□ -1.12
VPS53-214ENST00000572607 DPEP2Q9H4A9 486 aa8.07□□□□□ -1.12
VPS53-214ENST00000572607 SUDS3Q9H7L9 328 aaPredicted RBP8.07□□□□□ -1.12
VPS53-214ENST00000572607 ZFYVE1Q9HBF4 777 aa8.07□□□□□ -1.12
VPS53-214ENST00000572607 GLOD4Q9HC38 313 aa8.07□□□□□ -1.12
VPS53-214ENST00000572607 FGF22Q9HCT0 170 aa8.07□□□□□ -1.12
VPS53-214ENST00000572607 MRPL40Q9NQ50 206 aaKnown RBP8.07□□□□□ -1.12
VPS53-214ENST00000572607 SIRPGQ9P1W8 387 aa8.07□□□□□ -1.12
VPS53-214ENST00000572607 TRHDEQ9UKU6 1024 aa8.07□□□□□ -1.12
VPS53-214ENST00000572607 PADI4Q9UM07 663 aa8.07□□□□□ -1.12
VPS53-214ENST00000572607 GPR34Q9UPC5 381 aa8.07□□□□□ -1.12
VPS53-214ENST00000572607 AK5Q9Y6K8 562 aa8.07□□□□□ -1.12
VPS53-214ENST00000572607 KNL1Q8NG31 2342 aa8.07□□□□□ -1.12
VPS53-214ENST00000572607 GOLGA4Q13439 2230 aaKnown RBP8.06□□□□□ -1.12
VPS53-214ENST00000572607 EME2A4GXA9 379 aaPredicted RBP8.06□□□□□ -1.12
VPS53-214ENST00000572607 MIF4GDA9UHW6 222 aaKnown RBP8.06□□□□□ -1.12
VPS53-214ENST00000572607 B4DGG1 531 aa8.06□□□□□ -1.12
VPS53-214ENST00000572607 ZW10O43264 779 aa8.06□□□□□ -1.12
VPS53-214ENST00000572607 PMPCBO75439 489 aa8.06□□□□□ -1.12
VPS53-214ENST00000572607 NDST3O95803 873 aa8.06□□□□□ -1.12
VPS53-214ENST00000572607 PRLP01236 227 aa8.06□□□□□ -1.12
VPS53-214ENST00000572607 SLC4A1P02730 911 aa8.06□□□□□ -1.12
VPS53-214ENST00000572607 CELA2BP08218 269 aaPredicted RBP8.06□□□□□ -1.12
VPS53-214ENST00000572607 MMP2P08253 660 aa8.06□□□□□ -1.12
VPS53-214ENST00000572607 MYF5P13349 255 aa8.06□□□□□ -1.12
VPS53-214ENST00000572607 NFKB1P19838 968 aa8.06□□□□□ -1.12
VPS53-214ENST00000572607 PTPN7P35236 360 aa8.06□□□□□ -1.12
VPS53-214ENST00000572607 CLDN6P56747 220 aa8.06□□□□□ -1.12
VPS53-214ENST00000572607 PTSQ03393 145 aa8.06□□□□□ -1.12
VPS53-214ENST00000572607 XRCC4Q13426 336 aa8.06□□□□□ -1.12
VPS53-214ENST00000572607 PRPSAP1Q14558 356 aa8.06□□□□□ -1.12
VPS53-214ENST00000572607 PTPRRQ15256 657 aa8.06□□□□□ -1.12
VPS53-214ENST00000572607 GUSBP11Q6P575 273 aa8.06□□□□□ -1.12
VPS53-214ENST00000572607 B4GALNT4Q76KP1 1039 aa8.06□□□□□ -1.12
VPS53-214ENST00000572607 PID1Q7Z2X4 250 aa8.06□□□□□ -1.12
VPS53-214ENST00000572607 KDELC2Q7Z4H8 507 aa8.06□□□□□ -1.12
VPS53-214ENST00000572607 MARCH9Q86YJ5 346 aa8.06□□□□□ -1.12
VPS53-214ENST00000572607 SLC35F3Q8IY50 421 aa8.06□□□□□ -1.12
VPS53-214ENST00000572607 CBARPQ8N350 705 aaPredicted RBP8.06□□□□□ -1.12
VPS53-214ENST00000572607 DCBLD1Q8N8Z6 715 aa8.06□□□□□ -1.12
VPS53-214ENST00000572607 FAM46DQ8NEK8 389 aa8.06□□□□□ -1.12
VPS53-214ENST00000572607 SCAMP4Q969E2 229 aa8.06□□□□□ -1.12
VPS53-214ENST00000572607 CRELD1Q96HD1 420 aa8.06□□□□□ -1.12
VPS53-214ENST00000572607 SMIM14Q96QK8 99 aa8.06□□□□□ -1.12
VPS53-214ENST00000572607 RIOK2Q9BVS4 552 aaKnown RBP8.06□□□□□ -1.12
VPS53-214ENST00000572607 FSD1LQ9BXM9 530 aa8.06□□□□□ -1.12
VPS53-214ENST00000572607 OSBPL8Q9BZF1 889 aa8.06□□□□□ -1.12
VPS53-214ENST00000572607 GPR63Q9BZJ6 419 aa8.06□□□□□ -1.12
VPS53-214ENST00000572607 LACRTQ9GZZ8 138 aa8.06□□□□□ -1.12
VPS53-214ENST00000572607 CDH19Q9H159 772 aa8.06□□□□□ -1.12
VPS53-214ENST00000572607 FAM83DQ9H4H8 585 aa8.06□□□□□ -1.12
VPS53-214ENST00000572607 CAAP1Q9H8G2 361 aa8.06□□□□□ -1.12
VPS53-214ENST00000572607 TRNAU1APQ9NX07 287 aaKnown RBP8.06□□□□□ -1.12
VPS53-214ENST00000572607 SAE1Q9UBE0 346 aaPredicted RBP8.06□□□□□ -1.12
VPS53-214ENST00000572607 FAM153AQ9UHL3 310 aa8.06□□□□□ -1.12
VPS53-214ENST00000572607 RSPH14Q9UHP6 348 aa8.06□□□□□ -1.12
VPS53-214ENST00000572607 PNMA8BQ9ULN7 279 aaPredicted RBP8.06□□□□□ -1.12
VPS53-214ENST00000572607 SLC17A4Q9Y2C5 497 aa8.06□□□□□ -1.12
VPS53-214ENST00000572607 EFR3BQ9Y2G0 817 aa8.06□□□□□ -1.12
VPS53-214ENST00000572607 REXO2Q9Y3B8 237 aaKnown RBP8.06□□□□□ -1.12
VPS53-214ENST00000572607 DUSP10Q9Y6W6 482 aa8.06□□□□□ -1.12
VPS53-214ENST00000572607 CABIN1Q9Y6J0 2220 aa8.06□□□□□ -1.12
VPS53-214ENST00000572607 ATMQ13315 3056 aa8.06□□□□□ -1.12
VPS53-214ENST00000572607 LY6G6EA0A0G2JKS1 128 aa8.05□□□□□ -1.12
VPS53-214ENST00000572607 GRID2IPA4D2P6 1211 aa8.05□□□□□ -1.12
VPS53-214ENST00000572607 INPP4BO15327 924 aa8.05□□□□□ -1.12
VPS53-214ENST00000572607 KRT86O43790 486 aa8.05□□□□□ -1.12
VPS53-214ENST00000572607 CSO75390 466 aaKnown RBP8.05□□□□□ -1.12
VPS53-214ENST00000572607 TCEA3O75764 348 aa8.05□□□□□ -1.12
VPS53-214ENST00000572607 MT-CYBP00156 380 aaPredicted RBP8.05□□□□□ -1.12
VPS53-214ENST00000572607 CEACAM5P06731 702 aa8.05□□□□□ -1.12
VPS53-214ENST00000572607 IVLP07476 585 aa8.05□□□□□ -1.12
VPS53-214ENST00000572607 SPINT3P49223 89 aa8.05□□□□□ -1.12
VPS53-214ENST00000572607 EIF3EP60228 445 aaKnown RBP8.05□□□□□ -1.12
VPS53-214ENST00000572607 OTUD4Q01804 1114 aaKnown RBP8.05□□□□□ -1.12
VPS53-214ENST00000572607 ADCY2Q08462 1091 aa8.05□□□□□ -1.12
VPS53-214ENST00000572607 CYP4F3Q08477 520 aa8.05□□□□□ -1.12
VPS53-214ENST00000572607 WASHC5Q12768 1159 aa8.05□□□□□ -1.12
VPS53-214ENST00000572607 MPP3Q13368 585 aa8.05□□□□□ -1.12
VPS53-214ENST00000572607 SPIDRQ14159 915 aa8.05□□□□□ -1.12
VPS53-214ENST00000572607 NOMO1Q15155 1222 aa8.05□□□□□ -1.12
VPS53-214ENST00000572607 ZNF569Q5MCW4 686 aa8.05□□□□□ -1.12
VPS53-214ENST00000572607 ALS2CLQ60I27 953 aa8.05□□□□□ -1.12
VPS53-214ENST00000572607 DARS2Q6PI48 645 aaKnown RBP8.05□□□□□ -1.12
VPS53-214ENST00000572607 RBM44Q6ZP01 1051 aaKnown RBP8.05□□□□□ -1.12
VPS53-214ENST00000572607 MARK2Q7KZI7 788 aaKnown RBP8.05□□□□□ -1.12
VPS53-214ENST00000572607 LYSMD3Q7Z3D4 306 aa8.05□□□□□ -1.12
VPS53-214ENST00000572607 GALNT13Q8IUC8 556 aa8.05□□□□□ -1.12
VPS53-214ENST00000572607 TMEM139Q8IV31 216 aa8.05□□□□□ -1.12
VPS53-214ENST00000572607 ZNF567Q8N184 647 aa8.05□□□□□ -1.12
VPS53-214ENST00000572607 PELI3Q8N2H9 469 aa8.05□□□□□ -1.12
VPS53-214ENST00000572607 RNF10Q8N5U6 811 aaKnown RBP8.05□□□□□ -1.12
VPS53-214ENST00000572607 KYQ8NBH2 561 aa8.05□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms