RNA–Protein interactions for RNA: ENST00000570062.1

VPS39-213, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 842 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-213ENST00000570062 BRD9Q9H8M2 597 aa7.94□□□□□ -1.14
VPS39-213ENST00000570062 DYRK4Q9NR20 520 aa7.94□□□□□ -1.14
VPS39-213ENST00000570062 GGT7Q9UJ14 662 aa7.94□□□□□ -1.14
VPS39-213ENST00000570062 CLEC4EQ9ULY5 219 aa7.94□□□□□ -1.14
VPS39-213ENST00000570062 RUVBL2Q9Y230 463 aaKnown RBP7.94□□□□□ -1.14
VPS39-213ENST00000570062 EPB41L3Q9Y2J2 1087 aaPredicted RBP7.94□□□□□ -1.14
VPS39-213ENST00000570062 MAP4K5Q9Y4K4 846 aa7.94□□□□□ -1.14
VPS39-213ENST00000570062 SPO11Q9Y5K1 396 aa7.94□□□□□ -1.14
VPS39-213ENST00000570062 ACTL7AQ9Y615 435 aa7.94□□□□□ -1.14
VPS39-213ENST00000570062 USH1CQ9Y6N9 552 aa7.94□□□□□ -1.14
VPS39-213ENST00000570062 LAMA2P24043 3122 aaKnown RBP7.94□□□□□ -1.14
VPS39-213ENST00000570062 ALPK3Q96L96 1907 aa7.93□□□□□ -1.14
VPS39-213ENST00000570062 DOCK4Q8N1I0 1966 aa7.93□□□□□ -1.14
VPS39-213ENST00000570062 PRUNE2Q8WUY3 3088 aa7.93□□□□□ -1.14
VPS39-213ENST00000570062 AGAP14A8MT82 685 aa7.93□□□□□ -1.14
VPS39-213ENST00000570062 EIF3FO00303 357 aaPredicted RBP7.93□□□□□ -1.14
VPS39-213ENST00000570062 PRMT5O14744 637 aaPredicted RBP7.93□□□□□ -1.14
VPS39-213ENST00000570062 ATP5HO75947 161 aa7.93□□□□□ -1.14
VPS39-213ENST00000570062 SRP72O76094 671 aaKnown RBP7.93□□□□□ -1.14
VPS39-213ENST00000570062 RHOBTB1O94844 696 aa7.93□□□□□ -1.14
VPS39-213ENST00000570062 GSTM1P09488 218 aa7.93□□□□□ -1.14
VPS39-213ENST00000570062 SLC35E2BP0CK96 405 aa7.93□□□□□ -1.14
VPS39-213ENST00000570062 TPBGLP0DKB5 382 aa7.93□□□□□ -1.14
VPS39-213ENST00000570062 HNRNPLP14866 589 aaKnown RBP eCLIP7.93□□□□□ -1.14
VPS39-213ENST00000570062 FDXRP22570 491 aa7.93□□□□□ -1.14
VPS39-213ENST00000570062 FCARP24071 287 aa7.93□□□□□ -1.14
VPS39-213ENST00000570062 ATP5F1P24539 256 aaPredicted RBP7.93□□□□□ -1.14
VPS39-213ENST00000570062 FOXN2P32314 431 aa7.93□□□□□ -1.14
VPS39-213ENST00000570062 NSG1P42857 185 aa7.93□□□□□ -1.14
VPS39-213ENST00000570062 MAPK9P45984 424 aa7.93□□□□□ -1.14
VPS39-213ENST00000570062 RGS4P49798 205 aa7.93□□□□□ -1.14
VPS39-213ENST00000570062 CCR3P51677 355 aa7.93□□□□□ -1.14
VPS39-213ENST00000570062 ARSDP51689 593 aa7.93□□□□□ -1.14
VPS39-213ENST00000570062 TAS2R39P59534 338 aa7.93□□□□□ -1.14
VPS39-213ENST00000570062 MPP1Q00013 466 aa7.93□□□□□ -1.14
VPS39-213ENST00000570062 GSTM4Q03013 218 aa7.93□□□□□ -1.14
VPS39-213ENST00000570062 TUSC1Q2TAM9 212 aa7.93□□□□□ -1.14
VPS39-213ENST00000570062 HNRNPA1L2Q32P51 320 aaKnown RBP7.93□□□□□ -1.14
VPS39-213ENST00000570062 TTLL9Q3SXZ7 439 aa7.93□□□□□ -1.14
VPS39-213ENST00000570062 FNDC3BQ53EP0 1204 aaKnown RBP7.93□□□□□ -1.14
VPS39-213ENST00000570062 ZRANB3Q5FWF4 1079 aa7.93□□□□□ -1.14
VPS39-213ENST00000570062 FAM182AQ5T1J6 154 aa7.93□□□□□ -1.14
VPS39-213ENST00000570062 LIPMQ5VYY2 423 aa7.93□□□□□ -1.14
VPS39-213ENST00000570062 TANGO2Q6ICL3 276 aa7.93□□□□□ -1.14
VPS39-213ENST00000570062 VITQ6UXI7 678 aa7.93□□□□□ -1.14
VPS39-213ENST00000570062 ZYG11AQ6WRX3 759 aa7.93□□□□□ -1.14
VPS39-213ENST00000570062 TAS2R42Q7RTR8 314 aa7.93□□□□□ -1.14
VPS39-213ENST00000570062 PIWIL4Q7Z3Z4 852 aaKnown RBP7.93□□□□□ -1.14
VPS39-213ENST00000570062 RAB44Q7Z6P3 723 aaPredicted RBP7.93□□□□□ -1.14
VPS39-213ENST00000570062 TTC7BQ86TV6 843 aa7.93□□□□□ -1.14
VPS39-213ENST00000570062 RNF135Q8IUD6 432 aa7.93□□□□□ -1.14
VPS39-213ENST00000570062 SLC41A1Q8IVJ1 513 aa7.93□□□□□ -1.14
VPS39-213ENST00000570062 CHCHD4Q8N4Q1 142 aa7.93□□□□□ -1.14
VPS39-213ENST00000570062 NAT16Q8N8M0 369 aa7.93□□□□□ -1.14
VPS39-213ENST00000570062 OR13C4Q8NGS5 318 aa7.93□□□□□ -1.14
VPS39-213ENST00000570062 RIN3Q8TB24 985 aa7.93□□□□□ -1.14
VPS39-213ENST00000570062 STAG3L4Q8TBR4 150 aa7.93□□□□□ -1.14
VPS39-213ENST00000570062 GRIN3AQ8TCU5 1115 aa7.93□□□□□ -1.14
VPS39-213ENST00000570062 STON2Q8WXE9 905 aa7.93□□□□□ -1.14
VPS39-213ENST00000570062 PBXIP1Q96AQ6 731 aa7.93□□□□□ -1.14
VPS39-213ENST00000570062 PDLIM5Q96HC4 596 aaKnown RBP7.93□□□□□ -1.14
VPS39-213ENST00000570062 SCYL1Q96KG9 808 aa7.93□□□□□ -1.14
VPS39-213ENST00000570062 UBXN10Q96LJ8 280 aa7.93□□□□□ -1.14
VPS39-213ENST00000570062 PANX3Q96QZ0 392 aa7.93□□□□□ -1.14
VPS39-213ENST00000570062 ELAC2Q9BQ52 826 aaKnown RBP7.93□□□□□ -1.14
VPS39-213ENST00000570062 CLPBQ9H078 707 aa7.93□□□□□ -1.14
VPS39-213ENST00000570062 KDM4CQ9H3R0 1056 aa7.93□□□□□ -1.14
VPS39-213ENST00000570062 EBF3Q9H4W6 596 aa7.93□□□□□ -1.14
VPS39-213ENST00000570062 TFB2MQ9H5Q4 396 aaKnown RBP7.93□□□□□ -1.14
VPS39-213ENST00000570062 ZDHHC6Q9H6R6 413 aa7.93□□□□□ -1.14
VPS39-213ENST00000570062 ASB8Q9H765 288 aa7.93□□□□□ -1.14
VPS39-213ENST00000570062 C8orf33Q9H7E9 229 aaPredicted RBP7.93□□□□□ -1.14
VPS39-213ENST00000570062 EML4Q9HC35 981 aaKnown RBP7.93□□□□□ -1.14
VPS39-213ENST00000570062 PFDN4Q9NQP4 134 aa7.93□□□□□ -1.14
VPS39-213ENST00000570062 FBXO6Q9NRD1 293 aaPredicted RBP7.93□□□□□ -1.14
VPS39-213ENST00000570062 FGFR1OP2Q9NVK5 253 aa7.93□□□□□ -1.14
VPS39-213ENST00000570062 NCKIPSDQ9NZQ3 722 aa7.93□□□□□ -1.14
VPS39-213ENST00000570062 CLEC1BQ9P126 229 aa7.93□□□□□ -1.14
VPS39-213ENST00000570062 SLC17A7Q9P2U7 560 aa7.93□□□□□ -1.14
VPS39-213ENST00000570062 SLCO3A1Q9UIG8 710 aa7.93□□□□□ -1.14
VPS39-213ENST00000570062 GNPTGQ9UJJ9 305 aa7.93□□□□□ -1.14
VPS39-213ENST00000570062 SORCS3Q9UPU3 1222 aa7.93□□□□□ -1.14
VPS39-213ENST00000570062 APOBEC2Q9Y235 224 aaKnown RBP7.93□□□□□ -1.14
VPS39-213ENST00000570062 MTCL1Q9Y4B5 1905 aaKnown RBP7.93□□□□□ -1.14
VPS39-213ENST00000570062 TRBV5-4A0A0C4DH59 114 aa7.92□□□□□ -1.14
VPS39-213ENST00000570062 CCDC78A2IDD5 438 aa7.92□□□□□ -1.14
VPS39-213ENST00000570062 EPOPA6NHQ4 379 aa7.92□□□□□ -1.14
VPS39-213ENST00000570062 UPK3BL1B0FP48 263 aa7.92□□□□□ -1.14
VPS39-213ENST00000570062 E5RI56 91 aa7.92□□□□□ -1.14
VPS39-213ENST00000570062 UPK3BL2E5RIL1 263 aa7.92□□□□□ -1.14
VPS39-213ENST00000570062 ANHXE9PGG2 379 aa7.92□□□□□ -1.14
VPS39-213ENST00000570062 GOLGA8TH3BQL2 631 aa7.92□□□□□ -1.14
VPS39-213ENST00000570062 NPHS1O60500 1241 aa7.92□□□□□ -1.14
VPS39-213ENST00000570062 MAGEC1O60732 1142 aa7.92□□□□□ -1.14
VPS39-213ENST00000570062 HNRNPCL1O60812 293 aaKnown RBP7.92□□□□□ -1.14
VPS39-213ENST00000570062 SMIM24O75264 130 aa7.92□□□□□ -1.14
VPS39-213ENST00000570062 AP2A2O94973 939 aa7.92□□□□□ -1.14
VPS39-213ENST00000570062 KAT7O95251 611 aa7.92□□□□□ -1.14
VPS39-213ENST00000570062 PIGNO95427 931 aa7.92□□□□□ -1.14
VPS39-213ENST00000570062 PRAMEF1O95521 474 aa7.92□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 123.3 ms