RNA–Protein interactions for RNA: ENST00000565316.6

CLN3-216, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,318 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-216ENST00000565316 DDA1Q9BW61 102 aa16.98■□□□□ 0.31
CLN3-216ENST00000565316 DTLQ9NZJ0 730 aa16.98■□□□□ 0.31
CLN3-216ENST00000565316 TMEM9Q9P0T7 183 aa16.98■□□□□ 0.31
CLN3-216ENST00000565316 OAS3Q9Y6K5 1087 aaKnown RBP16.98■□□□□ 0.31
CLN3-216ENST00000565316 BSNQ9UPA5 3926 aa16.98■□□□□ 0.31
CLN3-216ENST00000565316 INPP4BO15327 924 aa16.97■□□□□ 0.31
CLN3-216ENST00000565316 H2AFZP0C0S5 128 aa16.97■□□□□ 0.31
CLN3-216ENST00000565316 ITGB6P18564 788 aa16.97■□□□□ 0.31
CLN3-216ENST00000565316 CASP14P31944 242 aa16.97■□□□□ 0.31
CLN3-216ENST00000565316 MAN1A1P33908 653 aa16.97■□□□□ 0.31
CLN3-216ENST00000565316 GJC1P36383 396 aa16.97■□□□□ 0.31
CLN3-216ENST00000565316 TBR1Q16650 682 aa16.97■□□□□ 0.31
CLN3-216ENST00000565316 H2AFVQ71UI9 128 aa16.97■□□□□ 0.31
CLN3-216ENST00000565316 CCDC13Q8IYE1 715 aa16.97■□□□□ 0.31
CLN3-216ENST00000565316 CCDC112Q8NEF3 446 aa16.97■□□□□ 0.31
CLN3-216ENST00000565316 LRRN4Q8WUT4 740 aa16.97■□□□□ 0.31
CLN3-216ENST00000565316 HTR3CQ8WXA8 447 aa16.97■□□□□ 0.31
CLN3-216ENST00000565316 NKD1Q969G9 470 aa16.97■□□□□ 0.31
CLN3-216ENST00000565316 FAM83DQ9H4H8 585 aa16.97■□□□□ 0.31
CLN3-216ENST00000565316 RMI1Q9H9A7 625 aa16.97■□□□□ 0.31
CLN3-216ENST00000565316 SARS2Q9NP81 518 aaKnown RBP16.97■□□□□ 0.31
CLN3-216ENST00000565316 STARD5Q9NSY2 213 aa16.97■□□□□ 0.31
CLN3-216ENST00000565316 ZNHIT2Q9UHR6 403 aa16.97■□□□□ 0.31
CLN3-216ENST00000565316 TTLL3Q9Y4R7 772 aa16.97■□□□□ 0.31
CLN3-216ENST00000565316 SDK2Q58EX2 2172 aa16.97■□□□□ 0.31
CLN3-216ENST00000565316 C1orf232A0A0U1RR37 186 aa16.96■□□□□ 0.31
CLN3-216ENST00000565316 A6NCN8 305 aa16.96■□□□□ 0.31
CLN3-216ENST00000565316 FADS2P1A8MWK0 482 aa16.96■□□□□ 0.31
CLN3-216ENST00000565316 ZNF487B1APH4 448 aa16.96■□□□□ 0.31
CLN3-216ENST00000565316 ANKRD66B4E2M5 251 aa16.96■□□□□ 0.31
CLN3-216ENST00000565316 ASMTLO95671 621 aa16.96■□□□□ 0.31
CLN3-216ENST00000565316 JCHAINP01591 159 aa16.96■□□□□ 0.31
CLN3-216ENST00000565316 ATP1A1P05023 1023 aaKnown RBP16.96■□□□□ 0.31
CLN3-216ENST00000565316 KDELR1P24390 212 aa16.96■□□□□ 0.31
CLN3-216ENST00000565316 MPSTP25325 297 aa16.96■□□□□ 0.31
CLN3-216ENST00000565316 CSTF2P33240 577 aaKnown RBP eCLIP16.96■□□□□ 0.31
CLN3-216ENST00000565316 IFI35P80217 286 aaPredicted RBP16.96■□□□□ 0.31
CLN3-216ENST00000565316 PPIDQ08752 370 aaKnown RBP16.96■□□□□ 0.31
CLN3-216ENST00000565316 SLC18A3Q16572 532 aa16.96■□□□□ 0.31
CLN3-216ENST00000565316 ASTE1Q2TB18 679 aaPredicted RBP16.96■□□□□ 0.31
CLN3-216ENST00000565316 IYDQ6PHW0 289 aa16.96■□□□□ 0.31
CLN3-216ENST00000565316 WDR74Q6RFH5 385 aaPredicted RBP16.96■□□□□ 0.31
CLN3-216ENST00000565316 CNTD1Q8N815 330 aa16.96■□□□□ 0.31
CLN3-216ENST00000565316 BMPERQ8N8U9 685 aa16.96■□□□□ 0.31
CLN3-216ENST00000565316 RAPGEF5Q92565 580 aa16.96■□□□□ 0.31
CLN3-216ENST00000565316 ART4Q93070 314 aa16.96■□□□□ 0.31
CLN3-216ENST00000565316 RNF157Q96PX1 679 aa16.96■□□□□ 0.31
CLN3-216ENST00000565316 SLC38A3Q99624 504 aa16.96■□□□□ 0.31
CLN3-216ENST00000565316 MLPHQ9BV36 600 aaPredicted RBP16.96■□□□□ 0.31
CLN3-216ENST00000565316 PACSIN1Q9BY11 444 aa16.96■□□□□ 0.31
CLN3-216ENST00000565316 ASPSCR1Q9BZE9 553 aa16.96■□□□□ 0.31
CLN3-216ENST00000565316 IFNKQ9P0W0 207 aa16.96■□□□□ 0.31
CLN3-216ENST00000565316 TBC1D29Q9UFV1 150 aa16.96■□□□□ 0.31
CLN3-216ENST00000565316 PRKAB1Q9Y478 270 aa16.96■□□□□ 0.31
CLN3-216ENST00000565316 B3GALT1Q9Y5Z6 326 aa16.96■□□□□ 0.31
CLN3-216ENST00000565316 TRBV23OR9-2A0A075B6M9 112 aa16.96■□□□□ 0.3
CLN3-216ENST00000565316 SLC28A2O43868 658 aa16.96■□□□□ 0.3
CLN3-216ENST00000565316 CD86P42081 329 aa16.96■□□□□ 0.3
CLN3-216ENST00000565316 ATP1A2P50993 1020 aa16.96■□□□□ 0.3
CLN3-216ENST00000565316 CHST15Q7LFX5 561 aaPredicted RBP16.96■□□□□ 0.3
CLN3-216ENST00000565316 LYSMD3Q7Z3D4 306 aa16.96■□□□□ 0.3
CLN3-216ENST00000565316 ARHGAP22Q7Z5H3 698 aa16.96■□□□□ 0.3
CLN3-216ENST00000565316 VSIG1Q86XK7 387 aa16.96■□□□□ 0.3
CLN3-216ENST00000565316 ZNF761Q86XN6 746 aaPredicted RBP16.96■□□□□ 0.3
CLN3-216ENST00000565316 PLD5Q8N7P1 536 aa16.96■□□□□ 0.3
CLN3-216ENST00000565316 CCNYQ8ND76 341 aa16.96■□□□□ 0.3
CLN3-216ENST00000565316 OR10G6Q8NH81 332 aa16.96■□□□□ 0.3
CLN3-216ENST00000565316 CCHCR1Q8TD31 782 aa16.96■□□□□ 0.3
CLN3-216ENST00000565316 CTNNBL1Q8WYA6 563 aaPredicted RBP16.96■□□□□ 0.3
CLN3-216ENST00000565316 EID2BQ96D98 161 aa16.96■□□□□ 0.3
CLN3-216ENST00000565316 TRIB3Q96RU7 358 aa16.96■□□□□ 0.3
CLN3-216ENST00000565316 ARHGAP9Q9BRR9 750 aa16.96■□□□□ 0.3
CLN3-216ENST00000565316 SLC12A9Q9BXP2 914 aa16.96■□□□□ 0.3
CLN3-216ENST00000565316 ADGRE3Q9BY15 652 aa16.96■□□□□ 0.3
CLN3-216ENST00000565316 SPRY4Q9C004 299 aa16.96■□□□□ 0.3
CLN3-216ENST00000565316 OCIAD1Q9NX40 245 aa16.96■□□□□ 0.3
CLN3-216ENST00000565316 SLC39A1Q9NY26 324 aa16.96■□□□□ 0.3
CLN3-216ENST00000565316 PKD2L2Q9NZM6 624 aa16.96■□□□□ 0.3
CLN3-216ENST00000565316 C3orf70A6NLC5 250 aaPredicted RBP16.95■□□□□ 0.3
CLN3-216ENST00000565316 GOLGA6L19H0YKK7 550 aa16.95■□□□□ 0.3
CLN3-216ENST00000565316 KCNK1O00180 336 aa16.95■□□□□ 0.3
CLN3-216ENST00000565316 DUX1O43812 170 aa16.95■□□□□ 0.3
CLN3-216ENST00000565316 NUAK1O60285 661 aa16.95■□□□□ 0.3
CLN3-216ENST00000565316 SFTPCP11686 197 aa16.95■□□□□ 0.3
CLN3-216ENST00000565316 UGT1A3P35503 534 aa16.95■□□□□ 0.3
CLN3-216ENST00000565316 CLCNKAP51800 687 aa16.95■□□□□ 0.3
CLN3-216ENST00000565316 RAB15P59190 212 aa16.95■□□□□ 0.3
CLN3-216ENST00000565316 CYP4F2P78329 520 aa16.95■□□□□ 0.3
CLN3-216ENST00000565316 HHEXQ03014 270 aa16.95■□□□□ 0.3
CLN3-216ENST00000565316 NFATC3Q12968 1075 aa16.95■□□□□ 0.3
CLN3-216ENST00000565316 ZBTB17Q13105 803 aa16.95■□□□□ 0.3
CLN3-216ENST00000565316 JPH3Q8WXH2 748 aaPredicted RBP16.95■□□□□ 0.3
CLN3-216ENST00000565316 SH3KBP1Q96B97 665 aa16.95■□□□□ 0.3
CLN3-216ENST00000565316 AHCYL2Q96HN2 611 aaKnown RBP16.95■□□□□ 0.3
CLN3-216ENST00000565316 ZNF830Q96NB3 372 aaPredicted RBP16.95■□□□□ 0.3
CLN3-216ENST00000565316 HERPUD2Q9BSE4 406 aa16.95■□□□□ 0.3
CLN3-216ENST00000565316 CARD9Q9H257 536 aa16.95■□□□□ 0.3
CLN3-216ENST00000565316 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP16.95■□□□□ 0.3
CLN3-216ENST00000565316 ADGRG1Q9Y653 693 aa16.95■□□□□ 0.3
CLN3-216ENST00000565316 HECTD1Q9ULT8 2610 aa16.94■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms