RNA–Protein interactions for RNA: ENST00000565228.1

VPS35-206, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 487 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-206ENST00000565228 GOLGA6DP0CG33 693 aa9.15□□□□□ -0.94
VPS35-206ENST00000565228 SPINK2P20155 84 aa9.15□□□□□ -0.94
VPS35-206ENST00000565228 PSMA3P25788 255 aa9.15□□□□□ -0.94
VPS35-206ENST00000565228 IVDP26440 423 aa9.15□□□□□ -0.94
VPS35-206ENST00000565228 AK4P27144 223 aaPredicted RBP9.15□□□□□ -0.94
VPS35-206ENST00000565228 GPR1P46091 355 aa9.15□□□□□ -0.94
VPS35-206ENST00000565228 VPS41P49754 854 aa9.15□□□□□ -0.94
VPS35-206ENST00000565228 HK3P52790 923 aa9.15□□□□□ -0.94
VPS35-206ENST00000565228 DCDC1P59894 354 aa9.15□□□□□ -0.94
VPS35-206ENST00000565228 CRADDP78560 199 aa9.15□□□□□ -0.94
VPS35-206ENST00000565228 TMPRSS15P98073 1019 aa9.15□□□□□ -0.94
VPS35-206ENST00000565228 B4GALNT1Q00973 533 aa9.15□□□□□ -0.94
VPS35-206ENST00000565228 POU6F1Q14863 301 aa9.15□□□□□ -0.94
VPS35-206ENST00000565228 DEFB133Q30KQ1 61 aa9.15□□□□□ -0.94
VPS35-206ENST00000565228 PRRT3Q5FWE3 981 aa9.15□□□□□ -0.94
VPS35-206ENST00000565228 CCDC137Q6PK04 289 aaKnown RBP9.15□□□□□ -0.94
VPS35-206ENST00000565228 DOK6Q6PKX4 331 aa9.15□□□□□ -0.94
VPS35-206ENST00000565228 FAM151BQ6UXP7 276 aa9.15□□□□□ -0.94
VPS35-206ENST00000565228 SYT10Q6XYQ8 523 aa9.15□□□□□ -0.94
VPS35-206ENST00000565228 GLT6D1Q7Z4J2 308 aa9.15□□□□□ -0.94
VPS35-206ENST00000565228 ADGRG6Q86SQ4 1221 aa9.15□□□□□ -0.94
VPS35-206ENST00000565228 MPP5Q8N3R9 675 aa9.15□□□□□ -0.94
VPS35-206ENST00000565228 OR4K2Q8NGD2 314 aa9.15□□□□□ -0.94
VPS35-206ENST00000565228 OR56A4Q8NGH8 313 aa9.15□□□□□ -0.94
VPS35-206ENST00000565228 LMX1AQ8TE12 382 aa9.15□□□□□ -0.94
VPS35-206ENST00000565228 RHBDD1Q8TEB9 315 aa9.15□□□□□ -0.94
VPS35-206ENST00000565228 SETD7Q8WTS6 366 aaKnown RBP9.15□□□□□ -0.94
VPS35-206ENST00000565228 CPT1BQ92523 772 aa9.15□□□□□ -0.94
VPS35-206ENST00000565228 MS4A3Q96HJ5 214 aa9.15□□□□□ -0.94
VPS35-206ENST00000565228 DNAJC1Q96KC8 554 aaKnown RBP9.15□□□□□ -0.94
VPS35-206ENST00000565228 NAPGQ99747 312 aaPredicted RBP9.15□□□□□ -0.94
VPS35-206ENST00000565228 GPR63Q9BZJ6 419 aa9.15□□□□□ -0.94
VPS35-206ENST00000565228 FAM96AQ9H5X1 160 aa9.15□□□□□ -0.94
VPS35-206ENST00000565228 WDR26Q9H7D7 661 aa9.15□□□□□ -0.94
VPS35-206ENST00000565228 SUDS3Q9H7L9 328 aaPredicted RBP9.15□□□□□ -0.94
VPS35-206ENST00000565228 SPATS2LQ9NUQ6 558 aaKnown RBP9.15□□□□□ -0.94
VPS35-206ENST00000565228 GOLGA6AQ9NYA3 693 aa9.15□□□□□ -0.94
VPS35-206ENST00000565228 ATXN10Q9UBB4 475 aa9.15□□□□□ -0.94
VPS35-206ENST00000565228 SLC23A2Q9UGH3 650 aa9.15□□□□□ -0.94
VPS35-206ENST00000565228 RABGEF1Q9UJ41 708 aa9.15□□□□□ -0.94
VPS35-206ENST00000565228 ZKSCAN5Q9Y2L8 839 aa9.15□□□□□ -0.94
VPS35-206ENST00000565228 AAR2Q9Y312 384 aaKnown RBP9.15□□□□□ -0.94
VPS35-206ENST00000565228 DGKBQ9Y6T7 804 aa9.15□□□□□ -0.94
VPS35-206ENST00000565228 FASNP49327 2511 aaKnown RBP9.14□□□□□ -0.95
VPS35-206ENST00000565228 FAM208BQ5VWN6 2430 aa9.14□□□□□ -0.95
VPS35-206ENST00000565228 MROH6A6NGR9 719 aa9.14□□□□□ -0.95
VPS35-206ENST00000565228 PRR19A6NJB7 356 aa9.14□□□□□ -0.95
VPS35-206ENST00000565228 FLRT2O43155 660 aa9.14□□□□□ -0.95
VPS35-206ENST00000565228 AQP9O43315 295 aa9.14□□□□□ -0.95
VPS35-206ENST00000565228 PHF2O75151 1096 aa9.14□□□□□ -0.95
VPS35-206ENST00000565228 AVILO75366 819 aa9.14□□□□□ -0.95
VPS35-206ENST00000565228 KRT14P02533 472 aa9.14□□□□□ -0.95
VPS35-206ENST00000565228 F7P08709 466 aaPredicted RBP9.14□□□□□ -0.95
VPS35-206ENST00000565228 ZNF8P17098 575 aaPredicted RBP9.14□□□□□ -0.95
VPS35-206ENST00000565228 CA4P22748 312 aa9.14□□□□□ -0.95
VPS35-206ENST00000565228 MAGEA6P43360 314 aa9.14□□□□□ -0.95
VPS35-206ENST00000565228 ACADVLP49748 655 aa9.14□□□□□ -0.95
VPS35-206ENST00000565228 THOP1P52888 689 aa9.14□□□□□ -0.95
VPS35-206ENST00000565228 CTSCP53634 463 aa9.14□□□□□ -0.95
VPS35-206ENST00000565228 ETF1P62495 437 aaKnown RBP9.14□□□□□ -0.95
VPS35-206ENST00000565228 PPARDQ03181 441 aa9.14□□□□□ -0.95
VPS35-206ENST00000565228 SEMA3AQ14563 771 aa9.14□□□□□ -0.95
VPS35-206ENST00000565228 TAF1AQ15573 450 aaPredicted RBP9.14□□□□□ -0.95
VPS35-206ENST00000565228 TRIP6Q15654 476 aaKnown RBP9.14□□□□□ -0.95
VPS35-206ENST00000565228 PYCR3Q53H96 274 aa9.14□□□□□ -0.95
VPS35-206ENST00000565228 MARK2Q7KZI7 788 aaKnown RBP9.14□□□□□ -0.95
VPS35-206ENST00000565228 C11orf96Q7Z7L8 435 aa9.14□□□□□ -0.95
VPS35-206ENST00000565228 GLRX5Q86SX6 157 aa9.14□□□□□ -0.95
VPS35-206ENST00000565228 CAND1Q86VP6 1230 aaKnown RBP9.14□□□□□ -0.95
VPS35-206ENST00000565228 DCP2Q8IU60 420 aaKnown RBP9.14□□□□□ -0.95
VPS35-206ENST00000565228 SLC35F3Q8IY50 421 aa9.14□□□□□ -0.95
VPS35-206ENST00000565228 PIANPQ8IYJ0 282 aa9.14□□□□□ -0.95
VPS35-206ENST00000565228 TRAM1L1Q8N609 369 aa9.14□□□□□ -0.95
VPS35-206ENST00000565228 OR13J1Q8NGT2 312 aa9.14□□□□□ -0.95
VPS35-206ENST00000565228 FAM174AQ8TBP5 190 aa9.14□□□□□ -0.95
VPS35-206ENST00000565228 BRSK1Q8TDC3 778 aa9.14□□□□□ -0.95
VPS35-206ENST00000565228 PATE1Q8WXA2 126 aa9.14□□□□□ -0.95
VPS35-206ENST00000565228 APOLD1Q96LR9 279 aa9.14□□□□□ -0.95
VPS35-206ENST00000565228 PWWP2AQ96N64 755 aa9.14□□□□□ -0.95
VPS35-206ENST00000565228 WDR83Q9BRX9 315 aaKnown RBP9.14□□□□□ -0.95
VPS35-206ENST00000565228 C1QTNF7Q9BXJ2 289 aa9.14□□□□□ -0.95
VPS35-206ENST00000565228 FSD1LQ9BXM9 530 aa9.14□□□□□ -0.95
VPS35-206ENST00000565228 LRRC40Q9H9A6 602 aa9.14□□□□□ -0.95
VPS35-206ENST00000565228 PLAC1Q9HBJ0 212 aa9.14□□□□□ -0.95
VPS35-206ENST00000565228 CYP4F12Q9HCS2 524 aa9.14□□□□□ -0.95
VPS35-206ENST00000565228 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP9.14□□□□□ -0.95
VPS35-206ENST00000565228 PKD2L2Q9NZM6 624 aa9.14□□□□□ -0.95
VPS35-206ENST00000565228 PAK5Q9P286 719 aa9.14□□□□□ -0.95
VPS35-206ENST00000565228 GULP1Q9UBP9 304 aa9.14□□□□□ -0.95
VPS35-206ENST00000565228 KLQ9UEF7 1012 aa9.14□□□□□ -0.95
VPS35-206ENST00000565228 APOBEC3BQ9UH17 382 aaKnown RBP9.14□□□□□ -0.95
VPS35-206ENST00000565228 UNC13CQ8NB66 2214 aa9.13□□□□□ -0.95
VPS35-206ENST00000565228 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP9.13□□□□□ -0.95
VPS35-206ENST00000565228 PRAMEF33A0A0G2JMD5 474 aa9.13□□□□□ -0.95
VPS35-206ENST00000565228 RGSL1A5PLK6 1076 aa9.13□□□□□ -0.95
VPS35-206ENST00000565228 AGAP14A8MT82 685 aa9.13□□□□□ -0.95
VPS35-206ENST00000565228 TOR1BO14657 336 aa9.13□□□□□ -0.95
VPS35-206ENST00000565228 TNFRSF10CO14798 259 aa9.13□□□□□ -0.95
VPS35-206ENST00000565228 NOBOXO60393 691 aa9.13□□□□□ -0.95
VPS35-206ENST00000565228 DFNA5O60443 496 aa9.13□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms