RNA–Protein interactions for RNA: ENST00000564091.6

CLN3-211, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 790 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-211ENST00000564091 MATN3O15232 486 aa16.72■□□□□ 0.27
CLN3-211ENST00000564091 NKX2-8O15522 239 aa16.72■□□□□ 0.27
CLN3-211ENST00000564091 DUX1O43812 170 aa16.72■□□□□ 0.27
CLN3-211ENST00000564091 SNX2O60749 519 aa16.72■□□□□ 0.27
CLN3-211ENST00000564091 MBD3O95983 291 aa16.72■□□□□ 0.27
CLN3-211ENST00000564091 PYGLP06737 847 aa16.72■□□□□ 0.27
CLN3-211ENST00000564091 GJC1P36383 396 aa16.72■□□□□ 0.27
CLN3-211ENST00000564091 ZNF165P49910 485 aa16.72■□□□□ 0.27
CLN3-211ENST00000564091 ARSEP51690 589 aa16.72■□□□□ 0.27
CLN3-211ENST00000564091 HHEXQ03014 270 aa16.72■□□□□ 0.27
CLN3-211ENST00000564091 DPYSL3Q14195 570 aa16.72■□□□□ 0.27
CLN3-211ENST00000564091 FAM71BQ8TC56 605 aa16.72■□□□□ 0.27
CLN3-211ENST00000564091 NCSTNQ92542 709 aa16.72■□□□□ 0.27
CLN3-211ENST00000564091 RTP4Q96DX8 246 aa16.72■□□□□ 0.27
CLN3-211ENST00000564091 RCOR3Q9P2K3 495 aaPredicted RBP16.72■□□□□ 0.27
CLN3-211ENST00000564091 PILRAQ9UKJ1 303 aa16.72■□□□□ 0.27
CLN3-211ENST00000564091 RELNP78509 3460 aa16.72■□□□□ 0.27
CLN3-211ENST00000564091 ARHGEF17Q96PE2 2063 aaPredicted RBP16.72■□□□□ 0.27
CLN3-211ENST00000564091 ANKRD36A6QL64 1941 aa16.72■□□□□ 0.27
CLN3-211ENST00000564091 MYO1FO00160 1098 aa16.71■□□□□ 0.27
CLN3-211ENST00000564091 SERPINC1P01008 464 aa16.71■□□□□ 0.27
CLN3-211ENST00000564091 CYP1A2P05177 515 aa16.71■□□□□ 0.27
CLN3-211ENST00000564091 HLA-DQB2P05538 268 aa16.71■□□□□ 0.27
CLN3-211ENST00000564091 ACP5P13686 325 aa16.71■□□□□ 0.27
CLN3-211ENST00000564091 ANP32AP39687 249 aaKnown RBP16.71■□□□□ 0.27
CLN3-211ENST00000564091 MAPK9P45984 424 aa16.71■□□□□ 0.27
CLN3-211ENST00000564091 POLE2P56282 527 aa16.71■□□□□ 0.27
CLN3-211ENST00000564091 RAB15P59190 212 aa16.71■□□□□ 0.27
CLN3-211ENST00000564091 PAFAH1B3Q15102 231 aaKnown RBP16.71■□□□□ 0.27
CLN3-211ENST00000564091 NFKBIBQ15653 356 aa16.71■□□□□ 0.27
CLN3-211ENST00000564091 HADHQ16836 314 aaKnown RBP16.71■□□□□ 0.27
CLN3-211ENST00000564091 FAM182AQ5T1J6 154 aa16.71■□□□□ 0.27
CLN3-211ENST00000564091 ALG1LQ6GMV1 187 aa16.71■□□□□ 0.27
CLN3-211ENST00000564091 TIGD7Q6NT04 549 aaPredicted RBP16.71■□□□□ 0.27
CLN3-211ENST00000564091 IYDQ6PHW0 289 aa16.71■□□□□ 0.27
CLN3-211ENST00000564091 ARHGAP22Q7Z5H3 698 aa16.71■□□□□ 0.27
CLN3-211ENST00000564091 UNC5BQ8IZJ1 945 aa16.71■□□□□ 0.27
CLN3-211ENST00000564091 PCDH9Q9HC56 1237 aa16.71■□□□□ 0.27
CLN3-211ENST00000564091 SARS2Q9NP81 518 aaKnown RBP16.71■□□□□ 0.27
CLN3-211ENST00000564091 KLHL3Q9UH77 587 aa16.71■□□□□ 0.27
CLN3-211ENST00000564091 A0A087X0T9 212 aa16.7■□□□□ 0.26
CLN3-211ENST00000564091 C1orf232A0A0U1RR37 186 aa16.7■□□□□ 0.26
CLN3-211ENST00000564091 FADS2P1A8MWK0 482 aa16.7■□□□□ 0.26
CLN3-211ENST00000564091 FAM228BP0C875 321 aa16.7■□□□□ 0.26
CLN3-211ENST00000564091 CES1P23141 567 aa16.7■□□□□ 0.26
CLN3-211ENST00000564091 CCNCP24863 283 aa16.7■□□□□ 0.26
CLN3-211ENST00000564091 SPINT3P49223 89 aa16.7■□□□□ 0.26
CLN3-211ENST00000564091 MC2RQ01718 297 aa16.7■□□□□ 0.26
CLN3-211ENST00000564091 GBE1Q04446 702 aa16.7■□□□□ 0.26
CLN3-211ENST00000564091 TLE1Q04724 770 aa16.7■□□□□ 0.26
CLN3-211ENST00000564091 KCNAB2Q13303 367 aa16.7■□□□□ 0.26
CLN3-211ENST00000564091 IFI16Q16666 785 aaKnown RBP16.7■□□□□ 0.26
CLN3-211ENST00000564091 QPCTQ16769 361 aa16.7■□□□□ 0.26
CLN3-211ENST00000564091 ANKRD20A8PQ5CZ79 823 aa16.7■□□□□ 0.26
CLN3-211ENST00000564091 FIGNQ5HY92 759 aa16.7■□□□□ 0.26
CLN3-211ENST00000564091 TIPARPQ7Z3E1 657 aaKnown RBP16.7■□□□□ 0.26
CLN3-211ENST00000564091 KCTD6Q8NC69 237 aa16.7■□□□□ 0.26
CLN3-211ENST00000564091 CPLX3Q8WVH0 158 aa16.7■□□□□ 0.26
CLN3-211ENST00000564091 TSGA13Q96PP4 275 aa16.7■□□□□ 0.26
CLN3-211ENST00000564091 LYSMD1Q96S90 227 aa16.7■□□□□ 0.26
CLN3-211ENST00000564091 SPRY4Q9C004 299 aa16.7■□□□□ 0.26
CLN3-211ENST00000564091 ADNPQ9H2P0 1102 aa16.7■□□□□ 0.26
CLN3-211ENST00000564091 FAM83DQ9H4H8 585 aa16.7■□□□□ 0.26
CLN3-211ENST00000564091 APMAPQ9HDC9 416 aa16.7■□□□□ 0.26
CLN3-211ENST00000564091 ARFGAP3Q9NP61 516 aa16.7■□□□□ 0.26
CLN3-211ENST00000564091 VPS18Q9P253 973 aa16.7■□□□□ 0.26
CLN3-211ENST00000564091 DNPEPQ9ULA0 475 aa16.7■□□□□ 0.26
CLN3-211ENST00000564091 BZW2Q9Y6E2 419 aaKnown RBP16.7■□□□□ 0.26
CLN3-211ENST00000564091 UBR5O95071 2799 aaPredicted RBP16.7■□□□□ 0.26
CLN3-211ENST00000564091 LOC101059948A0A1B0GTJ6 334 aa16.69■□□□□ 0.26
CLN3-211ENST00000564091 A6NCN8 305 aa16.69■□□□□ 0.26
CLN3-211ENST00000564091 ZNF891A8MT65 544 aaPredicted RBP16.69■□□□□ 0.26
CLN3-211ENST00000564091 PRKAR1AP10644 381 aa16.69■□□□□ 0.26
CLN3-211ENST00000564091 CCR10P46092 362 aa16.69■□□□□ 0.26
CLN3-211ENST00000564091 SLC10A2Q12908 348 aaPredicted RBP16.69■□□□□ 0.26
CLN3-211ENST00000564091 IQCB1Q15051 598 aa16.69■□□□□ 0.26
CLN3-211ENST00000564091 SKIDA1Q1XH10 827 aa16.69■□□□□ 0.26
CLN3-211ENST00000564091 ZNF648Q5T619 568 aaPredicted RBP16.69■□□□□ 0.26
CLN3-211ENST00000564091 HENMT1Q5T8I9 393 aaKnown RBP16.69■□□□□ 0.26
CLN3-211ENST00000564091 WDR74Q6RFH5 385 aaPredicted RBP16.69■□□□□ 0.26
CLN3-211ENST00000564091 NLGN4XQ8N0W4 816 aa16.69■□□□□ 0.26
CLN3-211ENST00000564091 PQLC3Q8N755 202 aa16.69■□□□□ 0.26
CLN3-211ENST00000564091 NLGN4YQ8NFZ3 816 aaPredicted RBP16.69■□□□□ 0.26
CLN3-211ENST00000564091 ZNF564Q8TBZ8 553 aaPredicted RBP16.69■□□□□ 0.26
CLN3-211ENST00000564091 RNF31Q96EP0 1072 aa16.69■□□□□ 0.26
CLN3-211ENST00000564091 SLC45A3Q96JT2 553 aa16.69■□□□□ 0.26
CLN3-211ENST00000564091 TEFMQ96QE5 360 aaKnown RBP16.69■□□□□ 0.26
CLN3-211ENST00000564091 TBC1D10AQ9BXI6 508 aa16.69■□□□□ 0.26
CLN3-211ENST00000564091 GPN2Q9H9Y4 310 aaPredicted RBP16.69■□□□□ 0.26
CLN3-211ENST00000564091 SCN8AQ9UQD0 1980 aa16.69■□□□□ 0.26
CLN3-211ENST00000564091 JCHAINP01591 159 aa16.68■□□□□ 0.26
CLN3-211ENST00000564091 SERPING1P05155 500 aa16.68■□□□□ 0.26
CLN3-211ENST00000564091 MMP2P08253 660 aa16.68■□□□□ 0.26
CLN3-211ENST00000564091 CA4P22748 312 aa16.68■□□□□ 0.26
CLN3-211ENST00000564091 MAP4P27816 1152 aaKnown RBP16.68■□□□□ 0.26
CLN3-211ENST00000564091 CD86P42081 329 aa16.68■□□□□ 0.26
CLN3-211ENST00000564091 TAS2R40P59535 323 aa16.68■□□□□ 0.26
CLN3-211ENST00000564091 RPL26P61254 145 aaKnown RBP16.68■□□□□ 0.26
CLN3-211ENST00000564091 ALKBH5Q6P6C2 394 aaKnown RBP16.68■□□□□ 0.26
CLN3-211ENST00000564091 CEACAM20Q6UY09 585 aa16.68■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 54.8 ms