RNA–Protein interactions for RNA: ENST00000562258.5

VPS39-205, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 4,160 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-205ENST00000562258 SLC44A4Q53GD3 710 aa9.2□□□□□ -0.94
VPS39-205ENST00000562258 PRRT3Q5FWE3 981 aa9.2□□□□□ -0.94
VPS39-205ENST00000562258 RNASEH2BQ5TBB1 312 aaKnown RBP9.2□□□□□ -0.94
VPS39-205ENST00000562258 LCA5Q86VQ0 697 aa9.2□□□□□ -0.94
VPS39-205ENST00000562258 AMZ2Q86W34 360 aa9.2□□□□□ -0.94
VPS39-205ENST00000562258 MIER2Q8N344 545 aa9.2□□□□□ -0.94
VPS39-205ENST00000562258 KLHDC7BQ96G42 594 aa9.2□□□□□ -0.94
VPS39-205ENST00000562258 PSKH2Q96QS6 385 aa9.2□□□□□ -0.94
VPS39-205ENST00000562258 PIF1Q9H611 641 aa9.2□□□□□ -0.94
VPS39-205ENST00000562258 SNX15Q9NRS6 342 aa9.2□□□□□ -0.94
VPS39-205ENST00000562258 BCAP29Q9UHQ4 241 aa9.2□□□□□ -0.94
VPS39-205ENST00000562258 MTO1Q9Y2Z2 717 aaKnown RBP9.2□□□□□ -0.94
VPS39-205ENST00000562258 KCNE2Q9Y6J6 123 aa9.2□□□□□ -0.94
VPS39-205ENST00000562258 RREB1Q92766 1687 aa9.2□□□□□ -0.94
VPS39-205ENST00000562258 H0Y3Z8 333 aa9.2□□□□□ -0.94
VPS39-205ENST00000562258 CYP17A1P05093 508 aa9.2□□□□□ -0.94
VPS39-205ENST00000562258 DCNP07585 359 aaKnown RBP9.2□□□□□ -0.94
VPS39-205ENST00000562258 HLA-FP30511 346 aa9.2□□□□□ -0.94
VPS39-205ENST00000562258 CXCL12P48061 93 aa9.2□□□□□ -0.94
VPS39-205ENST00000562258 CLCN4P51793 760 aa9.2□□□□□ -0.94
VPS39-205ENST00000562258 CACNG1Q06432 222 aa9.2□□□□□ -0.94
VPS39-205ENST00000562258 PAFAH1B3Q15102 231 aaKnown RBP9.2□□□□□ -0.94
VPS39-205ENST00000562258 CYP2A13Q16696 494 aa9.2□□□□□ -0.94
VPS39-205ENST00000562258 PHKG1Q16816 387 aa9.2□□□□□ -0.94
VPS39-205ENST00000562258 AGBL2Q5U5Z8 902 aa9.2□□□□□ -0.94
VPS39-205ENST00000562258 VPS37AQ8NEZ2 397 aa9.2□□□□□ -0.94
VPS39-205ENST00000562258 PYCR2Q96C36 320 aa9.2□□□□□ -0.94
VPS39-205ENST00000562258 KLF16Q9BXK1 252 aaPredicted RBP9.2□□□□□ -0.94
VPS39-205ENST00000562258 ACSS3Q9H6R3 686 aa9.2□□□□□ -0.94
VPS39-205ENST00000562258 RUBCNLQ9H714 662 aa9.2□□□□□ -0.94
VPS39-205ENST00000562258 PCDH12Q9NPG4 1184 aa9.2□□□□□ -0.94
VPS39-205ENST00000562258 EPS15L1Q9UBC2 864 aa9.2□□□□□ -0.94
VPS39-205ENST00000562258 RABGEF1Q9UJ41 708 aa9.2□□□□□ -0.94
VPS39-205ENST00000562258 LATO43561 262 aa9.19□□□□□ -0.94
VPS39-205ENST00000562258 CYP7B1O75881 506 aa9.19□□□□□ -0.94
VPS39-205ENST00000562258 SERPINB5P36952 375 aa9.19□□□□□ -0.94
VPS39-205ENST00000562258 EIF4HQ15056 248 aaKnown RBP9.19□□□□□ -0.94
VPS39-205ENST00000562258 DUSP6Q16828 381 aa9.19□□□□□ -0.94
VPS39-205ENST00000562258 SLC5A9Q2M3M2 681 aa9.19□□□□□ -0.94
VPS39-205ENST00000562258 FUT11Q495W5 492 aa9.19□□□□□ -0.94
VPS39-205ENST00000562258 XKR6Q5GH73 641 aa9.19□□□□□ -0.94
VPS39-205ENST00000562258 ZNF648Q5T619 568 aaPredicted RBP9.19□□□□□ -0.94
VPS39-205ENST00000562258 HECTD2Q5U5R9 776 aa9.19□□□□□ -0.94
VPS39-205ENST00000562258 IL27RAQ6UWB1 636 aa9.19□□□□□ -0.94
VPS39-205ENST00000562258 FAM43BQ6ZT52 329 aaPredicted RBP9.19□□□□□ -0.94
VPS39-205ENST00000562258 GPR135Q8IZ08 494 aa9.19□□□□□ -0.94
VPS39-205ENST00000562258 UMODL1-AS1Q8N2C9 162 aa9.19□□□□□ -0.94
VPS39-205ENST00000562258 GFM2Q969S9 779 aaKnown RBP9.19□□□□□ -0.94
VPS39-205ENST00000562258 ZNF599Q96NL3 588 aa9.19□□□□□ -0.94
VPS39-205ENST00000562258 PRPF18Q99633 342 aaKnown RBP9.19□□□□□ -0.94
VPS39-205ENST00000562258 ACE2Q9BYF1 805 aaPredicted RBP9.19□□□□□ -0.94
VPS39-205ENST00000562258 RHOJQ9H4E5 214 aa9.19□□□□□ -0.94
VPS39-205ENST00000562258 VIPAS39Q9H9C1 493 aa9.19□□□□□ -0.94
VPS39-205ENST00000562258 KCNK12Q9HB15 430 aa9.19□□□□□ -0.94
VPS39-205ENST00000562258 ARHGEF3Q9NR81 526 aa9.19□□□□□ -0.94
VPS39-205ENST00000562258 NMRK1Q9NWW6 199 aa9.19□□□□□ -0.94
VPS39-205ENST00000562258 IGSF9Q9P2J2 1179 aa9.19□□□□□ -0.94
VPS39-205ENST00000562258 USP3Q9Y6I4 520 aa9.19□□□□□ -0.94
VPS39-205ENST00000562258 ARAP2Q8WZ64 1704 aa9.19□□□□□ -0.94
VPS39-205ENST00000562258 KPNA5O15131 536 aa9.19□□□□□ -0.94
VPS39-205ENST00000562258 TYRP1P17643 537 aa9.19□□□□□ -0.94
VPS39-205ENST00000562258 TPSB2P20231 275 aa9.19□□□□□ -0.94
VPS39-205ENST00000562258 SKIV2L2P42285 1042 aaKnown RBP9.19□□□□□ -0.94
VPS39-205ENST00000562258 AQP5P55064 265 aa9.19□□□□□ -0.94
VPS39-205ENST00000562258 TAS2R39P59534 338 aa9.19□□□□□ -0.94
VPS39-205ENST00000562258 GABPB1Q06547 395 aaPredicted RBP9.19□□□□□ -0.94
VPS39-205ENST00000562258 ACSM2AQ08AH3 577 aa9.19□□□□□ -0.94
VPS39-205ENST00000562258 TPSAB1Q15661 275 aa9.19□□□□□ -0.94
VPS39-205ENST00000562258 CST6Q15828 149 aa9.19□□□□□ -0.94
VPS39-205ENST00000562258 LARP7Q4G0J3 582 aaKnown RBP eCLIP9.19□□□□□ -0.94
VPS39-205ENST00000562258 ACSM2BQ68CK6 577 aa9.19□□□□□ -0.94
VPS39-205ENST00000562258 SLC9A4Q6AI14 798 aa9.19□□□□□ -0.94
VPS39-205ENST00000562258 CERS6Q6ZMG9 384 aa9.19□□□□□ -0.94
VPS39-205ENST00000562258 LRRC34Q8IZ02 419 aa9.19□□□□□ -0.94
VPS39-205ENST00000562258 FIBINQ8TAL6 211 aa9.19□□□□□ -0.94
VPS39-205ENST00000562258 LMX1AQ8TE12 382 aa9.19□□□□□ -0.94
VPS39-205ENST00000562258 RSRC1Q96IZ7 334 aaKnown RBP9.19□□□□□ -0.94
VPS39-205ENST00000562258 MYADMQ96S97 322 aa9.19□□□□□ -0.94
VPS39-205ENST00000562258 THUMPD3Q9BV44 507 aaKnown RBP9.19□□□□□ -0.94
VPS39-205ENST00000562258 CDH19Q9H159 772 aa9.19□□□□□ -0.94
VPS39-205ENST00000562258 MRPL46Q9H2W6 279 aaKnown RBP9.19□□□□□ -0.94
VPS39-205ENST00000562258 MYH15Q9Y2K3 1946 aa9.19□□□□□ -0.94
VPS39-205ENST00000562258 SNX8Q9Y5X2 465 aa9.19□□□□□ -0.94
VPS39-205ENST00000562258 LRRC37AA6NMS7 1700 aa9.19□□□□□ -0.94
VPS39-205ENST00000562258 C5orf58C9J3I9 102 aa9.19□□□□□ -0.94
VPS39-205ENST00000562258 QSOX1O00391 747 aa9.19□□□□□ -0.94
VPS39-205ENST00000562258 E2F6O75461 281 aa9.19□□□□□ -0.94
VPS39-205ENST00000562258 POP7O75817 140 aaKnown RBP9.19□□□□□ -0.94
VPS39-205ENST00000562258 MPOP05164 745 aa9.19□□□□□ -0.94
VPS39-205ENST00000562258 HMGA1P17096 107 aaKnown RBP9.19□□□□□ -0.94
VPS39-205ENST00000562258 BLKP51451 505 aa9.19□□□□□ -0.94
VPS39-205ENST00000562258 EGFLAMQ63HQ2 1017 aa9.19□□□□□ -0.94
VPS39-205ENST00000562258 SEL1L3Q68CR1 1132 aa9.19□□□□□ -0.94
VPS39-205ENST00000562258 FNDC5Q8NAU1 212 aa9.19□□□□□ -0.94
VPS39-205ENST00000562258 ADAMTS19Q8TE59 1207 aa9.19□□□□□ -0.94
VPS39-205ENST00000562258 SDCCAG3Q96C92 435 aa9.19□□□□□ -0.94
VPS39-205ENST00000562258 ERP27Q96DN0 273 aa9.19□□□□□ -0.94
VPS39-205ENST00000562258 SMIM14Q96QK8 99 aa9.19□□□□□ -0.94
VPS39-205ENST00000562258 CCT8L2Q96SF2 557 aa9.19□□□□□ -0.94
VPS39-205ENST00000562258 C8orf33Q9H7E9 229 aaPredicted RBP9.19□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms