RNA–Protein interactions for RNA: ENST00000561818.1

VPS39-204, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-204ENST00000561818 ACADVLP49748 655 aa7.47□□□□□ -1.21
VPS39-204ENST00000561818 HNMTP50135 292 aa7.47□□□□□ -1.21
VPS39-204ENST00000561818 ARSDP51689 593 aa7.47□□□□□ -1.21
VPS39-204ENST00000561818 CCNHP51946 323 aaPredicted RBP7.47□□□□□ -1.21
VPS39-204ENST00000561818 CDKL1Q00532 357 aa7.47□□□□□ -1.21
VPS39-204ENST00000561818 OVGP1Q12889 678 aa7.47□□□□□ -1.21
VPS39-204ENST00000561818 LCP2Q13094 533 aa7.47□□□□□ -1.21
VPS39-204ENST00000561818 STX5Q13190 355 aa7.47□□□□□ -1.21
VPS39-204ENST00000561818 KCNC3Q14003 757 aa7.47□□□□□ -1.21
VPS39-204ENST00000561818 DLG2Q15700 870 aa7.47□□□□□ -1.21
VPS39-204ENST00000561818 PTPRNQ16849 979 aa7.47□□□□□ -1.21
VPS39-204ENST00000561818 SMU1Q2TAY7 513 aa7.47□□□□□ -1.21
VPS39-204ENST00000561818 TRMT5Q32P41 509 aaKnown RBP7.47□□□□□ -1.21
VPS39-204ENST00000561818 FUT11Q495W5 492 aa7.47□□□□□ -1.21
VPS39-204ENST00000561818 ACCSLQ4AC99 568 aa7.47□□□□□ -1.21
VPS39-204ENST00000561818 ZNF805Q5CZA5 627 aa7.47□□□□□ -1.21
VPS39-204ENST00000561818 PPM1JQ5JR12 505 aa7.47□□□□□ -1.21
VPS39-204ENST00000561818 LY6G5CQ5SRR4 150 aa7.47□□□□□ -1.21
VPS39-204ENST00000561818 LDLRAP1Q5SW96 308 aa7.47□□□□□ -1.21
VPS39-204ENST00000561818 RARS2Q5T160 578 aaKnown RBP7.47□□□□□ -1.21
VPS39-204ENST00000561818 C10orf62Q5T681 223 aaPredicted RBP7.47□□□□□ -1.21
VPS39-204ENST00000561818 ANKS6Q68DC2 871 aa7.47□□□□□ -1.21
VPS39-204ENST00000561818 C16orf46Q6P387 395 aa7.47□□□□□ -1.21
VPS39-204ENST00000561818 C16orf89Q6UX73 402 aa7.47□□□□□ -1.21
VPS39-204ENST00000561818 MTSS1LQ765P7 747 aa7.47□□□□□ -1.21
VPS39-204ENST00000561818 ZNF765Q7L2R6 523 aa7.47□□□□□ -1.21
VPS39-204ENST00000561818 TAS2R42Q7RTR8 314 aa7.47□□□□□ -1.21
VPS39-204ENST00000561818 CYP2U1Q7Z449 544 aa7.47□□□□□ -1.21
VPS39-204ENST00000561818 ISCA2Q86U28 154 aa7.47□□□□□ -1.21
VPS39-204ENST00000561818 GALNT13Q8IUC8 556 aa7.47□□□□□ -1.21
VPS39-204ENST00000561818 YAF2Q8IY57 180 aa7.47□□□□□ -1.21
VPS39-204ENST00000561818 ADGRG2Q8IZP9 1017 aa7.47□□□□□ -1.21
VPS39-204ENST00000561818 TNS4Q8IZW8 715 aa7.47□□□□□ -1.21
VPS39-204ENST00000561818 CLYBLQ8N0X4 340 aa7.47□□□□□ -1.21
VPS39-204ENST00000561818 NXPE1Q8N323 547 aa7.47□□□□□ -1.21
VPS39-204ENST00000561818 FBXO39Q8N4B4 442 aa7.47□□□□□ -1.21
VPS39-204ENST00000561818 CPSF7Q8N684 471 aaKnown RBP7.47□□□□□ -1.21
VPS39-204ENST00000561818 TMIEQ8NEW7 156 aa7.47□□□□□ -1.21
VPS39-204ENST00000561818 OR56A4Q8NGH8 313 aa7.47□□□□□ -1.21
VPS39-204ENST00000561818 OR52K2Q8NGK3 314 aa7.47□□□□□ -1.21
VPS39-204ENST00000561818 OR13C4Q8NGS5 318 aa7.47□□□□□ -1.21
VPS39-204ENST00000561818 RP9Q8TA86 221 aaKnown RBP7.47□□□□□ -1.21
VPS39-204ENST00000561818 KCNV2Q8TDN2 545 aa7.47□□□□□ -1.21
VPS39-204ENST00000561818 OR8D1Q8WZ84 308 aa7.47□□□□□ -1.21
VPS39-204ENST00000561818 STMN2Q93045 179 aa7.47□□□□□ -1.21
VPS39-204ENST00000561818 PBXIP1Q96AQ6 731 aa7.47□□□□□ -1.21
VPS39-204ENST00000561818 NXNL1Q96CM4 212 aa7.47□□□□□ -1.21
VPS39-204ENST00000561818 MRPL38Q96DV4 380 aaKnown RBP7.47□□□□□ -1.21
VPS39-204ENST00000561818 MSANTD3Q96H12 275 aa7.47□□□□□ -1.21
VPS39-204ENST00000561818 MAELQ96JY0 434 aaKnown RBP7.47□□□□□ -1.21
VPS39-204ENST00000561818 EXOC2Q96KP1 924 aa7.47□□□□□ -1.21
VPS39-204ENST00000561818 RIPOR3Q96MK2 946 aa7.47□□□□□ -1.21
VPS39-204ENST00000561818 NECTIN4Q96NY8 510 aa7.47□□□□□ -1.21
VPS39-204ENST00000561818 GATA5Q9BWX5 397 aaPredicted RBP7.47□□□□□ -1.21
VPS39-204ENST00000561818 FAM126AQ9BYI3 521 aaPredicted RBP7.47□□□□□ -1.21
VPS39-204ENST00000561818 TM6SF2Q9BZW4 377 aa7.47□□□□□ -1.21
VPS39-204ENST00000561818 ASB8Q9H765 288 aa7.47□□□□□ -1.21
VPS39-204ENST00000561818 SLC28A3Q9HAS3 691 aa7.47□□□□□ -1.21
VPS39-204ENST00000561818 KCNK13Q9HB14 408 aa7.47□□□□□ -1.21
VPS39-204ENST00000561818 ZFP14Q9HCL3 533 aa7.47□□□□□ -1.21
VPS39-204ENST00000561818 SLC40A1Q9NP59 571 aa7.47□□□□□ -1.21
VPS39-204ENST00000561818 DYRK4Q9NR20 520 aa7.47□□□□□ -1.21
VPS39-204ENST00000561818 KLC4Q9NSK0 619 aa7.47□□□□□ -1.21
VPS39-204ENST00000561818 RIC8BQ9NVN3 520 aa7.47□□□□□ -1.21
VPS39-204ENST00000561818 ZDHHC3Q9NYG2 299 aa7.47□□□□□ -1.21
VPS39-204ENST00000561818 IL1RAPL1Q9NZN1 696 aa7.47□□□□□ -1.21
VPS39-204ENST00000561818 DEC1Q9P2X7 70 aa7.47□□□□□ -1.21
VPS39-204ENST00000561818 IL36AQ9UHA7 158 aa7.47□□□□□ -1.21
VPS39-204ENST00000561818 PRPF19Q9UMS4 504 aaKnown RBP7.47□□□□□ -1.21
VPS39-204ENST00000561818 DHRS7Q9Y394 339 aa7.47□□□□□ -1.21
VPS39-204ENST00000561818 PTPRSQ13332 1948 aa7.46□□□□□ -1.21
VPS39-204ENST00000561818 TMEM265A0A087WTH1 108 aa7.46□□□□□ -1.22
VPS39-204ENST00000561818 A8MT66 165 aa7.46□□□□□ -1.22
VPS39-204ENST00000561818 CAPN14A8MX76 684 aa7.46□□□□□ -1.22
VPS39-204ENST00000561818 UPK3BL1B0FP48 263 aa7.46□□□□□ -1.22
VPS39-204ENST00000561818 GPR89AB7ZAQ6 455 aa7.46□□□□□ -1.22
VPS39-204ENST00000561818 UPK3BL2E5RIL1 263 aa7.46□□□□□ -1.22
VPS39-204ENST00000561818 CHUKO15111 745 aa7.46□□□□□ -1.22
VPS39-204ENST00000561818 KLK8O60259 260 aa7.46□□□□□ -1.22
VPS39-204ENST00000561818 MGRN1O60291 552 aa7.46□□□□□ -1.22
VPS39-204ENST00000561818 DLX3O60479 287 aa7.46□□□□□ -1.22
VPS39-204ENST00000561818 RNASEH1O60930 286 aaKnown RBP7.46□□□□□ -1.22
VPS39-204ENST00000561818 PIGNO95427 931 aa7.46□□□□□ -1.22
VPS39-204ENST00000561818 STAMBPO95630 424 aa7.46□□□□□ -1.22
VPS39-204ENST00000561818 ENO1P06733 434 aaKnown RBP7.46□□□□□ -1.22
VPS39-204ENST00000561818 CA3P07451 260 aa7.46□□□□□ -1.22
VPS39-204ENST00000561818 KRT16P08779 473 aa7.46□□□□□ -1.22
VPS39-204ENST00000561818 SPATA31D3P0C874 917 aa7.46□□□□□ -1.22
VPS39-204ENST00000561818 GPR89BP0CG08 455 aa7.46□□□□□ -1.22
VPS39-204ENST00000561818 CHRM3P20309 590 aa7.46□□□□□ -1.22
VPS39-204ENST00000561818 GLDCP23378 1020 aa7.46□□□□□ -1.22
VPS39-204ENST00000561818 CCND1P24385 295 aa7.46□□□□□ -1.22
VPS39-204ENST00000561818 CD70P32970 193 aa7.46□□□□□ -1.22
VPS39-204ENST00000561818 ABL2P42684 1182 aa7.46□□□□□ -1.22
VPS39-204ENST00000561818 RGRP47804 291 aa7.46□□□□□ -1.22
VPS39-204ENST00000561818 MRPL19P49406 292 aaKnown RBP7.46□□□□□ -1.22
VPS39-204ENST00000561818 NUMBP49757 651 aa7.46□□□□□ -1.22
VPS39-204ENST00000561818 IDH3AP50213 366 aa7.46□□□□□ -1.22
VPS39-204ENST00000561818 AP1S2P56377 157 aa7.46□□□□□ -1.22
VPS39-204ENST00000561818 MXRA7P84157 204 aa7.46□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms