RNA–Protein interactions for RNA: ENST00000561689.6

CLN3-209, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,957 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-209ENST00000561689 ILF2Q12905 390 aaKnown RBP21.14■□□□□ 0.98
CLN3-209ENST00000561689 GKAP1Q5VSY0 366 aaPredicted RBP21.14■□□□□ 0.98
CLN3-209ENST00000561689 CGB2Q6NT52 195 aa21.14■□□□□ 0.98
CLN3-209ENST00000561689 CERS6Q6ZMG9 384 aa21.14■□□□□ 0.98
CLN3-209ENST00000561689 ZCCHC23Q6ZST2 131 aa21.14■□□□□ 0.98
CLN3-209ENST00000561689 FSTL5Q8N475 847 aaPredicted RBP21.14■□□□□ 0.98
CLN3-209ENST00000561689 TMEM151AQ8N4L1 468 aa21.14■□□□□ 0.98
CLN3-209ENST00000561689 ZNF513Q8N8E2 541 aaPredicted RBP21.14■□□□□ 0.98
CLN3-209ENST00000561689 KCNK12Q9HB15 430 aa21.14■□□□□ 0.98
CLN3-209ENST00000561689 CRLS1Q9UJA2 301 aa21.14■□□□□ 0.98
CLN3-209ENST00000561689 STARD13Q9Y3M8 1113 aa21.14■□□□□ 0.98
CLN3-209ENST00000561689 MUC22E2RYF6 1773 aaPredicted RBP21.14■□□□□ 0.97
CLN3-209ENST00000561689 MBTPS2O43462 519 aa21.14■□□□□ 0.97
CLN3-209ENST00000561689 EDF1O60869 148 aaKnown RBP21.14■□□□□ 0.97
CLN3-209ENST00000561689 ZNF30P17039 623 aa21.14■□□□□ 0.97
CLN3-209ENST00000561689 NFKBIAP25963 317 aa21.14■□□□□ 0.97
CLN3-209ENST00000561689 ITGB7P26010 798 aa21.14■□□□□ 0.97
CLN3-209ENST00000561689 TIE1P35590 1138 aa21.14■□□□□ 0.97
CLN3-209ENST00000561689 RALGDSQ12967 914 aa21.14■□□□□ 0.97
CLN3-209ENST00000561689 CTSL3PQ5NE16 218 aa21.14■□□□□ 0.97
CLN3-209ENST00000561689 LRRC8EQ6NSJ5 796 aa21.14■□□□□ 0.97
CLN3-209ENST00000561689 LCA5Q86VQ0 697 aa21.14■□□□□ 0.97
CLN3-209ENST00000561689 UBXN10Q96LJ8 280 aa21.14■□□□□ 0.97
CLN3-209ENST00000561689 BOCQ9BWV1 1114 aa21.14■□□□□ 0.97
CLN3-209ENST00000561689 SUN2Q9UH99 717 aa21.14■□□□□ 0.97
CLN3-209ENST00000561689 SPECC1L-ADORA2AF8WAN1 911 aa21.13■□□□□ 0.97
CLN3-209ENST00000561689 G3V2L1 256 aa21.13■□□□□ 0.97
CLN3-209ENST00000561689 WISP3O95389 354 aaPredicted RBP21.13■□□□□ 0.97
CLN3-209ENST00000561689 PKMP14618 531 aaKnown RBP21.13■□□□□ 0.97
CLN3-209ENST00000561689 CTHP32929 405 aa21.13■□□□□ 0.97
CLN3-209ENST00000561689 MMP12P39900 470 aa21.13■□□□□ 0.97
CLN3-209ENST00000561689 PTPN5P54829 565 aa21.13■□□□□ 0.97
CLN3-209ENST00000561689 SMAD4Q13485 552 aaKnown RBP21.13■□□□□ 0.97
CLN3-209ENST00000561689 ERAP2Q6P179 960 aa21.13■□□□□ 0.97
CLN3-209ENST00000561689 FBXL19Q6PCT2 694 aa21.13■□□□□ 0.97
CLN3-209ENST00000561689 Q6ZVL8 140 aa21.13■□□□□ 0.97
CLN3-209ENST00000561689 DPPA4Q7L190 304 aa21.13■□□□□ 0.97
CLN3-209ENST00000561689 PIGWQ7Z7B1 504 aa21.13■□□□□ 0.97
CLN3-209ENST00000561689 SLC44A3Q8N4M1 653 aa21.13■□□□□ 0.97
CLN3-209ENST00000561689 THOC1Q96FV9 657 aaKnown RBP21.13■□□□□ 0.97
CLN3-209ENST00000561689 SEC16BQ96JE7 1060 aa21.13■□□□□ 0.97
CLN3-209ENST00000561689 ABCG8Q9H221 673 aa21.13■□□□□ 0.97
CLN3-209ENST00000561689 PKD2L2Q9NZM6 624 aa21.13■□□□□ 0.97
CLN3-209ENST00000561689 GALPQ9UBC7 116 aa21.13■□□□□ 0.97
CLN3-209ENST00000561689 TRBV5-4A0A0C4DH59 114 aa21.12■□□□□ 0.97
CLN3-209ENST00000561689 NIPSNAP2O75323 286 aa21.12■□□□□ 0.97
CLN3-209ENST00000561689 LTA4HP09960 611 aaKnown RBP21.12■□□□□ 0.97
CLN3-209ENST00000561689 SBK3P0C264 359 aa21.12■□□□□ 0.97
CLN3-209ENST00000561689 HNRNPLP14866 589 aaKnown RBP eCLIP21.12■□□□□ 0.97
CLN3-209ENST00000561689 ACRV1P26436 265 aa21.12■□□□□ 0.97
CLN3-209ENST00000561689 ETV3P41162 512 aa21.12■□□□□ 0.97
CLN3-209ENST00000561689 PSMD8P48556 350 aa21.12■□□□□ 0.97
CLN3-209ENST00000561689 SUOXP51687 545 aa21.12■□□□□ 0.97
CLN3-209ENST00000561689 BST1Q10588 318 aa21.12■□□□□ 0.97
CLN3-209ENST00000561689 PDAP1Q13442 181 aaKnown RBP21.12■□□□□ 0.97
CLN3-209ENST00000561689 FAM83EQ2M2I3 478 aa21.12■□□□□ 0.97
CLN3-209ENST00000561689 ATP13A5Q4VNC0 1218 aa21.12■□□□□ 0.97
CLN3-209ENST00000561689 OTOAQ7RTW8 1153 aa21.12■□□□□ 0.97
CLN3-209ENST00000561689 TRIM42Q8IWZ5 723 aa21.12■□□□□ 0.97
CLN3-209ENST00000561689 PPP1R14CQ8TAE6 165 aa21.12■□□□□ 0.97
CLN3-209ENST00000561689 PLEKHG4BQ96PX9 1271 aa21.12■□□□□ 0.97
CLN3-209ENST00000561689 WRAP53Q9BUR4 548 aaKnown RBP21.12■□□□□ 0.97
CLN3-209ENST00000561689 P2RY12Q9H244 342 aa21.12■□□□□ 0.97
CLN3-209ENST00000561689 HEBP1Q9NRV9 189 aa21.12■□□□□ 0.97
CLN3-209ENST00000561689 TAS2R13Q9NYV9 303 aa21.12■□□□□ 0.97
CLN3-209ENST00000561689 XPR1Q9UBH6 696 aa21.12■□□□□ 0.97
CLN3-209ENST00000561689 IQCF5A8MTL0 148 aa21.12■□□□□ 0.97
CLN3-209ENST00000561689 FGF3P11487 239 aaPredicted RBP21.12■□□□□ 0.97
CLN3-209ENST00000561689 TNFRSF4P43489 277 aa21.12■□□□□ 0.97
CLN3-209ENST00000561689 KIR2DL1P43626 348 aaPredicted RBP21.12■□□□□ 0.97
CLN3-209ENST00000561689 TSNAXIP1Q2TAA8 658 aa21.12■□□□□ 0.97
CLN3-209ENST00000561689 GPR33Q49SQ1 333 aa21.12■□□□□ 0.97
CLN3-209ENST00000561689 SETMARQ53H47 684 aaPredicted RBP21.12■□□□□ 0.97
CLN3-209ENST00000561689 Q7L0L9 218 aa21.12■□□□□ 0.97
CLN3-209ENST00000561689 DSG4Q86SJ6 1040 aa21.12■□□□□ 0.97
CLN3-209ENST00000561689 CACUL1Q86Y37 369 aa21.12■□□□□ 0.97
CLN3-209ENST00000561689 SCAMP4Q969E2 229 aa21.12■□□□□ 0.97
CLN3-209ENST00000561689 GPR21Q99679 349 aa21.12■□□□□ 0.97
CLN3-209ENST00000561689 TSSK1BQ9BXA7 367 aa21.12■□□□□ 0.97
CLN3-209ENST00000561689 ZNF395Q9H8N7 513 aaPredicted RBP21.12■□□□□ 0.97
CLN3-209ENST00000561689 PIAS3Q9Y6X2 628 aa21.12■□□□□ 0.97
CLN3-209ENST00000561689 TCF20Q9UGU0 1960 aaKnown RBP21.11■□□□□ 0.97
CLN3-209ENST00000561689 PRMT5O14744 637 aaPredicted RBP21.11■□□□□ 0.97
CLN3-209ENST00000561689 KLF11O14901 512 aa21.11■□□□□ 0.97
CLN3-209ENST00000561689 SPINT1O43278 529 aa21.11■□□□□ 0.97
CLN3-209ENST00000561689 SNX3O60493 162 aa21.11■□□□□ 0.97
CLN3-209ENST00000561689 ESR1P03372 595 aa21.11■□□□□ 0.97
CLN3-209ENST00000561689 APOA4P06727 396 aa21.11■□□□□ 0.97
CLN3-209ENST00000561689 ASGR2P07307 311 aa21.11■□□□□ 0.97
CLN3-209ENST00000561689 ADARP55265 1226 aaKnown RBP21.11■□□□□ 0.97
CLN3-209ENST00000561689 OVGP1Q12889 678 aa21.11■□□□□ 0.97
CLN3-209ENST00000561689 C2orf27AQ580R0 203 aa21.11■□□□□ 0.97
CLN3-209ENST00000561689 AGAP9Q5VTM2 703 aa21.11■□□□□ 0.97
CLN3-209ENST00000561689 ZDHHC20Q5W0Z9 365 aa21.11■□□□□ 0.97
CLN3-209ENST00000561689 PAQR3Q6TCH7 311 aa21.11■□□□□ 0.97
CLN3-209ENST00000561689 NXPE1Q8N323 547 aa21.11■□□□□ 0.97
CLN3-209ENST00000561689 CLDN19Q8N6F1 224 aa21.11■□□□□ 0.97
CLN3-209ENST00000561689 SGF29Q96ES7 293 aa21.11■□□□□ 0.97
CLN3-209ENST00000561689 PPP1R16AQ96I34 528 aa21.11■□□□□ 0.97
CLN3-209ENST00000561689 TTC1Q99614 292 aa21.11■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms