RNA–Protein interactions for RNA: ENST00000559192.5

USP3-210, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 5,499 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-210ENST00000559192 FAR1Q8WVX9 515 aa7.09□□□□□ -1.27
USP3-210ENST00000559192 REXO5Q96IC2 774 aaKnown RBP7.09□□□□□ -1.27
USP3-210ENST00000559192 BCO2Q9BYV7 579 aa7.09□□□□□ -1.27
USP3-210ENST00000559192 MINDY3Q9H8M7 445 aa7.09□□□□□ -1.27
USP3-210ENST00000559192 IFT80Q9P2H3 777 aaPredicted RBP7.09□□□□□ -1.27
USP3-210ENST00000559192 C3orf18Q9UK00 162 aa7.09□□□□□ -1.27
USP3-210ENST00000559192 CDH9Q9ULB4 789 aa7.09□□□□□ -1.27
USP3-210ENST00000559192 VPS9D1Q9Y2B5 631 aa7.09□□□□□ -1.27
USP3-210ENST00000559192 TBC1D30Q9Y2I9 924 aa7.09□□□□□ -1.27
USP3-210ENST00000559192 SPATA31A6Q5VVP1 1343 aa7.09□□□□□ -1.27
USP3-210ENST00000559192 TTC24A2A3L6 582 aaPredicted RBP7.09□□□□□ -1.27
USP3-210ENST00000559192 A8MX80 341 aa7.09□□□□□ -1.27
USP3-210ENST00000559192 F5H5T6 163 aa7.09□□□□□ -1.27
USP3-210ENST00000559192 CD3EAPO15446 510 aaKnown RBP7.09□□□□□ -1.27
USP3-210ENST00000559192 RAMP2O60895 175 aa7.09□□□□□ -1.27
USP3-210ENST00000559192 ZNF182P17025 639 aaPredicted RBP7.09□□□□□ -1.27
USP3-210ENST00000559192 RPS12P25398 132 aaKnown RBP7.09□□□□□ -1.27
USP3-210ENST00000559192 ADSLP30566 484 aaPredicted RBP7.09□□□□□ -1.27
USP3-210ENST00000559192 GRM5P41594 1212 aa7.09□□□□□ -1.27
USP3-210ENST00000559192 OXCT1P55809 520 aa7.09□□□□□ -1.27
USP3-210ENST00000559192 AP1S2P56377 157 aa7.09□□□□□ -1.27
USP3-210ENST00000559192 TBX4P57082 545 aa7.09□□□□□ -1.27
USP3-210ENST00000559192 SYPL2Q5VXT5 272 aa7.09□□□□□ -1.27
USP3-210ENST00000559192 RBM12BQ8IXT5 1001 aaKnown RBP7.09□□□□□ -1.27
USP3-210ENST00000559192 MAPK15Q8TD08 544 aa7.09□□□□□ -1.27
USP3-210ENST00000559192 CLPBQ9H078 707 aa7.09□□□□□ -1.27
USP3-210ENST00000559192 ACTR8Q9H981 624 aa7.09□□□□□ -1.27
USP3-210ENST00000559192 EXD2Q9NVH0 621 aa7.09□□□□□ -1.27
USP3-210ENST00000559192 MAGEL2Q9UJ55 1249 aa7.09□□□□□ -1.27
USP3-210ENST00000559192 ST14Q9Y5Y6 855 aa7.09□□□□□ -1.27
USP3-210ENST00000559192 DOCK2Q92608 1830 aa7.09□□□□□ -1.27
USP3-210ENST00000559192 DPYSL4O14531 572 aa7.09□□□□□ -1.28
USP3-210ENST00000559192 TSPAN1O60635 241 aa7.09□□□□□ -1.28
USP3-210ENST00000559192 IL7RP16871 459 aa7.09□□□□□ -1.28
USP3-210ENST00000559192 CDH5P33151 784 aaPredicted RBP7.09□□□□□ -1.28
USP3-210ENST00000559192 FBXW4P57775 412 aa7.09□□□□□ -1.28
USP3-210ENST00000559192 ECT2LQ008S8 904 aa7.09□□□□□ -1.28
USP3-210ENST00000559192 LAPTM5Q13571 262 aa7.09□□□□□ -1.28
USP3-210ENST00000559192 ZFP69Q49AA0 526 aa7.09□□□□□ -1.28
USP3-210ENST00000559192 SYTL3Q4VX76 610 aa7.09□□□□□ -1.28
USP3-210ENST00000559192 FKBP1CQ5VVH2 108 aa7.09□□□□□ -1.28
USP3-210ENST00000559192 MZT2BQ6NZ67 158 aa7.09□□□□□ -1.28
USP3-210ENST00000559192 ERICH5Q6P6B1 374 aa7.09□□□□□ -1.28
USP3-210ENST00000559192 ZNF549Q6P9A3 640 aa7.09□□□□□ -1.28
USP3-210ENST00000559192 RNASE11Q8TAA1 199 aaKnown RBP7.09□□□□□ -1.28
USP3-210ENST00000559192 FBXO32Q969P5 355 aa7.09□□□□□ -1.28
USP3-210ENST00000559192 MYLPFQ96A32 169 aa7.09□□□□□ -1.28
USP3-210ENST00000559192 ESAMQ96AP7 390 aa7.09□□□□□ -1.28
USP3-210ENST00000559192 GPBP1L1Q9HC44 474 aaPredicted RBP7.09□□□□□ -1.28
USP3-210ENST00000559192 INTS10Q9NVR2 710 aaKnown RBP7.09□□□□□ -1.28
USP3-210ENST00000559192 RCOR3Q9P2K3 495 aaPredicted RBP7.09□□□□□ -1.28
USP3-210ENST00000559192 ZNF222Q9UK12 451 aa7.09□□□□□ -1.28
USP3-210ENST00000559192 PMF1-BGLAPU3KQ54 211 aa7.09□□□□□ -1.28
USP3-210ENST00000559192 DDX60LQ5H9U9 1706 aaKnown RBP7.08□□□□□ -1.28
USP3-210ENST00000559192 ARAP2Q8WZ64 1704 aa7.08□□□□□ -1.28
USP3-210ENST00000559192 CLDN25C9JDP6 229 aa7.08□□□□□ -1.28
USP3-210ENST00000559192 H3BNH8 94 aa7.08□□□□□ -1.28
USP3-210ENST00000559192 BCKDKO14874 412 aa7.08□□□□□ -1.28
USP3-210ENST00000559192 AREL1O15033 823 aa7.08□□□□□ -1.28
USP3-210ENST00000559192 RGS14O43566 566 aa7.08□□□□□ -1.28
USP3-210ENST00000559192 LRATO95237 230 aa7.08□□□□□ -1.28
USP3-210ENST00000559192 AHSGP02765 367 aa7.08□□□□□ -1.28
USP3-210ENST00000559192 RXRBP28702 533 aa7.08□□□□□ -1.28
USP3-210ENST00000559192 IDH2P48735 452 aaKnown RBP7.08□□□□□ -1.28
USP3-210ENST00000559192 PRIM2P49643 509 aa7.08□□□□□ -1.28
USP3-210ENST00000559192 STARP49675 285 aa7.08□□□□□ -1.28
USP3-210ENST00000559192 RHDQ02161 417 aa7.08□□□□□ -1.28
USP3-210ENST00000559192 NIPAL4Q0D2K0 466 aa7.08□□□□□ -1.28
USP3-210ENST00000559192 MAPKAPK3Q16644 382 aa7.08□□□□□ -1.28
USP3-210ENST00000559192 C5orf22Q49AR2 442 aa7.08□□□□□ -1.28
USP3-210ENST00000559192 SDHAF4Q5VUM1 108 aa7.08□□□□□ -1.28
USP3-210ENST00000559192 SULT1C3Q6IMI6 304 aa7.08□□□□□ -1.28
USP3-210ENST00000559192 MCFD2Q8NI22 146 aa7.08□□□□□ -1.28
USP3-210ENST00000559192 ZNF512Q96ME7 567 aaPredicted RBP7.08□□□□□ -1.28
USP3-210ENST00000559192 SORT1Q99523 831 aa7.08□□□□□ -1.28
USP3-210ENST00000559192 TSEN34Q9BSV6 310 aaKnown RBP7.08□□□□□ -1.28
USP3-210ENST00000559192 AKTIPQ9H8T0 292 aa7.08□□□□□ -1.28
USP3-210ENST00000559192 FBRSL1Q9HCM7 1045 aaKnown RBP7.08□□□□□ -1.28
USP3-210ENST00000559192 SIX4Q9UIU6 781 aa7.08□□□□□ -1.28
USP3-210ENST00000559192 MYH11P35749 1972 aa7.08□□□□□ -1.28
USP3-210ENST00000559192 A0A1W2PQ72 361 aa7.08□□□□□ -1.28
USP3-210ENST00000559192 OR51F1A6NGY5 319 aa7.08□□□□□ -1.28
USP3-210ENST00000559192 A8MT66 165 aa7.08□□□□□ -1.28
USP3-210ENST00000559192 NOTOA8MTQ0 251 aa7.08□□□□□ -1.28
USP3-210ENST00000559192 STAU1O95793 577 aaKnown RBP7.08□□□□□ -1.28
USP3-210ENST00000559192 IL1BP01584 269 aa7.08□□□□□ -1.28
USP3-210ENST00000559192 SERPINF2P08697 491 aa7.08□□□□□ -1.28
USP3-210ENST00000559192 FMO3P31513 532 aa7.08□□□□□ -1.28
USP3-210ENST00000559192 CHI3L1P36222 383 aaPredicted RBP7.08□□□□□ -1.28
USP3-210ENST00000559192 NDST2P52849 883 aa7.08□□□□□ -1.28
USP3-210ENST00000559192 ACAP2Q15057 778 aa7.08□□□□□ -1.28
USP3-210ENST00000559192 QPRTQ15274 297 aa7.08□□□□□ -1.28
USP3-210ENST00000559192 DDI2Q5TDH0 399 aa7.08□□□□□ -1.28
USP3-210ENST00000559192 RAP1GAP2Q684P5 730 aa7.08□□□□□ -1.28
USP3-210ENST00000559192 ZNF621Q6ZSS3 439 aa7.08□□□□□ -1.28
USP3-210ENST00000559192 ZNF605Q86T29 641 aa7.08□□□□□ -1.28
USP3-210ENST00000559192 RIOX2Q8IUF8 465 aa7.08□□□□□ -1.28
USP3-210ENST00000559192 LZTR1Q8N653 840 aa7.08□□□□□ -1.28
USP3-210ENST00000559192 PDPRQ8NCN5 879 aa7.08□□□□□ -1.28
USP3-210ENST00000559192 OR2T12Q8NG77 320 aa7.08□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms