RNA–Protein interactions for RNA: ENST00000558925.1

USP3-209, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 3

Gene USP3, Length 501 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-209ENST00000558925 GFM1Q96RP9 751 aaKnown RBP1.65□□□□□ -2.15
USP3-209ENST00000558925 SEPT5Q99719 369 aaPredicted RBP1.65□□□□□ -2.15
USP3-209ENST00000558925 OLFM1Q99784 485 aa1.65□□□□□ -2.15
USP3-209ENST00000558925 CCDC106Q9BWC9 280 aa1.65□□□□□ -2.15
USP3-209ENST00000558925 PRSS22Q9GZN4 317 aa1.65□□□□□ -2.15
USP3-209ENST00000558925 SPRTNQ9H040 489 aaPredicted RBP1.65□□□□□ -2.15
USP3-209ENST00000558925 PPIL3Q9H2H8 161 aaKnown RBP1.65□□□□□ -2.15
USP3-209ENST00000558925 RABEP2Q9H5N1 569 aa1.65□□□□□ -2.15
USP3-209ENST00000558925 EPB41L5Q9HCM4 733 aa1.65□□□□□ -2.15
USP3-209ENST00000558925 MMP25Q9NPA2 562 aa1.65□□□□□ -2.15
USP3-209ENST00000558925 SLC35C2Q9NQQ7 365 aa1.65□□□□□ -2.15
USP3-209ENST00000558925 SIRT3Q9NTG7 399 aaPredicted RBP1.65□□□□□ -2.15
USP3-209ENST00000558925 ZBTB40Q9NUA8 1239 aa1.65□□□□□ -2.15
USP3-209ENST00000558925 TRNAU1APQ9NX07 287 aaKnown RBP1.65□□□□□ -2.15
USP3-209ENST00000558925 CHCHD3Q9NX63 227 aaKnown RBP1.65□□□□□ -2.15
USP3-209ENST00000558925 TAS2R14Q9NYV8 317 aa1.65□□□□□ -2.15
USP3-209ENST00000558925 OR6C3Q9NZP0 311 aa1.65□□□□□ -2.15
USP3-209ENST00000558925 FLRT1Q9NZU1 646 aa1.65□□□□□ -2.15
USP3-209ENST00000558925 CWC15Q9P013 229 aaKnown RBP1.65□□□□□ -2.15
USP3-209ENST00000558925 BCCIPQ9P287 314 aaKnown RBP eCLIP1.65□□□□□ -2.15
USP3-209ENST00000558925 MARCH4Q9P2E8 410 aaPredicted RBP1.65□□□□□ -2.15
USP3-209ENST00000558925 CRNNQ9UBG3 495 aaPredicted RBP1.65□□□□□ -2.15
USP3-209ENST00000558925 OR14J1Q9UGF5 321 aa1.65□□□□□ -2.15
USP3-209ENST00000558925 ZNF112Q9UJU3 913 aa1.65□□□□□ -2.15
USP3-209ENST00000558925 NOL7Q9UMY1 257 aaKnown RBP1.65□□□□□ -2.15
USP3-209ENST00000558925 CDC14AQ9UNH5 594 aa1.65□□□□□ -2.15
USP3-209ENST00000558925 PCDHGA5Q9Y5G8 931 aa1.65□□□□□ -2.15
USP3-209ENST00000558925 TTC3P53804 2025 aa1.65□□□□□ -2.15
USP3-209ENST00000558925 TAF1P21675 1872 aa1.65□□□□□ -2.15
USP3-209ENST00000558925 CACNA1IQ9P0X4 2223 aa1.64□□□□□ -2.15
USP3-209ENST00000558925 EVPLQ92817 2033 aa1.64□□□□□ -2.15
USP3-209ENST00000558925 A0A0U1RQG5 324 aaPredicted RBP1.64□□□□□ -2.15
USP3-209ENST00000558925 A0A1B0GVT2 93 aa1.64□□□□□ -2.15
USP3-209ENST00000558925 A0A1W2PPM1 405 aa1.64□□□□□ -2.15
USP3-209ENST00000558925 CPED1A4D0V7 1026 aa1.64□□□□□ -2.15
USP3-209ENST00000558925 TMEM8BA6NDV4 472 aa1.64□□□□□ -2.15
USP3-209ENST00000558925 LRRC72A6NJI9 287 aa1.64□□□□□ -2.15
USP3-209ENST00000558925 ERVV-2B6SEH9 535 aa1.64□□□□□ -2.15
USP3-209ENST00000558925 PRR23D1E9PI22 279 aaPredicted RBP1.64□□□□□ -2.15
USP3-209ENST00000558925 M0QZ24 198 aa1.64□□□□□ -2.15
USP3-209ENST00000558925 SMAD9O15198 467 aaKnown RBP1.64□□□□□ -2.15
USP3-209ENST00000558925 HSPA12AO43301 675 aa1.64□□□□□ -2.15
USP3-209ENST00000558925 ITM2AO43736 263 aa1.64□□□□□ -2.15
USP3-209ENST00000558925 NDUFS7O75251 213 aa1.64□□□□□ -2.15
USP3-209ENST00000558925 GPC4O75487 556 aa1.64□□□□□ -2.15
USP3-209ENST00000558925 CREG1O75629 220 aa1.64□□□□□ -2.15
USP3-209ENST00000558925 TOMM70O94826 608 aa1.64□□□□□ -2.15
USP3-209ENST00000558925 NDUFB4O95168 129 aa1.64□□□□□ -2.15
USP3-209ENST00000558925 LCATP04180 440 aa1.64□□□□□ -2.15
USP3-209ENST00000558925 PRR23D2P0DMB1 279 aaPredicted RBP1.64□□□□□ -2.15
USP3-209ENST00000558925 MYBL1P10243 752 aa1.64□□□□□ -2.15
USP3-209ENST00000558925 ARSBP15848 533 aa1.64□□□□□ -2.15
USP3-209ENST00000558925 CYP11B2P19099 503 aa1.64□□□□□ -2.15
USP3-209ENST00000558925 GNLYP22749 145 aa1.64□□□□□ -2.15
USP3-209ENST00000558925 KELP23276 732 aa1.64□□□□□ -2.15
USP3-209ENST00000558925 MYF6P23409 242 aa1.64□□□□□ -2.15
USP3-209ENST00000558925 TBXAS1P24557 533 aaPredicted RBP1.64□□□□□ -2.15
USP3-209ENST00000558925 AZGP1P25311 298 aaKnown RBP1.64□□□□□ -2.15
USP3-209ENST00000558925 ITGB8P26012 769 aa1.64□□□□□ -2.15
USP3-209ENST00000558925 CHATP28329 748 aa1.64□□□□□ -2.15
USP3-209ENST00000558925 NMBRP28336 390 aa1.64□□□□□ -2.15
USP3-209ENST00000558925 CCR10P46092 362 aa1.64□□□□□ -2.15
USP3-209ENST00000558925 MMP14P50281 582 aa1.64□□□□□ -2.15
USP3-209ENST00000558925 CCR3P51677 355 aa1.64□□□□□ -2.15
USP3-209ENST00000558925 ZNF41P51814 821 aaPredicted RBP1.64□□□□□ -2.15
USP3-209ENST00000558925 HNRNPKP61978 463 aaKnown RBP eCLIP1.64□□□□□ -2.15
USP3-209ENST00000558925 MRPS34P82930 218 aaKnown RBP1.64□□□□□ -2.15
USP3-209ENST00000558925 TFAP4Q01664 338 aa1.64□□□□□ -2.15
USP3-209ENST00000558925 PPATQ06203 517 aa1.64□□□□□ -2.15
USP3-209ENST00000558925 BAATQ14032 418 aaPredicted RBP1.64□□□□□ -2.15
USP3-209ENST00000558925 PTGR1Q14914 329 aa1.64□□□□□ -2.15
USP3-209ENST00000558925 PSMD6Q15008 389 aa1.64□□□□□ -2.15
USP3-209ENST00000558925 KRT24Q2M2I5 525 aa1.64□□□□□ -2.15
USP3-209ENST00000558925 PRTGQ2VWP7 1150 aa1.64□□□□□ -2.15
USP3-209ENST00000558925 MYLK3Q32MK0 819 aa1.64□□□□□ -2.15
USP3-209ENST00000558925 KRTAP27-1Q3LI81 207 aa1.64□□□□□ -2.15
USP3-209ENST00000558925 ATP13A5Q4VNC0 1218 aa1.64□□□□□ -2.15
USP3-209ENST00000558925 FAM98BQ52LJ0 330 aaKnown RBP1.64□□□□□ -2.15
USP3-209ENST00000558925 MTX3Q5HYI7 312 aa1.64□□□□□ -2.15
USP3-209ENST00000558925 C9orf152Q5JTZ5 239 aa1.64□□□□□ -2.15
USP3-209ENST00000558925 Q5PR19 223 aa1.64□□□□□ -2.15
USP3-209ENST00000558925 DCAF12L2Q5VW00 463 aa1.64□□□□□ -2.15
USP3-209ENST00000558925 KRT79Q5XKE5 535 aa1.64□□□□□ -2.15
USP3-209ENST00000558925 SIGIRRQ6IA17 410 aa1.64□□□□□ -2.15
USP3-209ENST00000558925 PLEKHA7Q6IQ23 1121 aa1.64□□□□□ -2.15
USP3-209ENST00000558925 DUS1LQ6P1R4 473 aaKnown RBP1.64□□□□□ -2.15
USP3-209ENST00000558925 TRAT1Q6PIZ9 186 aa1.64□□□□□ -2.15
USP3-209ENST00000558925 DCLRE1AQ6PJP8 1040 aa1.64□□□□□ -2.15
USP3-209ENST00000558925 PARM1Q6UWI2 310 aa1.64□□□□□ -2.15
USP3-209ENST00000558925 DLK2Q6UY11 383 aa1.64□□□□□ -2.15
USP3-209ENST00000558925 SLC36A4Q6YBV0 504 aa1.64□□□□□ -2.15
USP3-209ENST00000558925 Q6ZTK2 550 aa1.64□□□□□ -2.15
USP3-209ENST00000558925 KRTAP5-2Q701N4 177 aa1.64□□□□□ -2.15
USP3-209ENST00000558925 MON1BQ7L1V2 547 aa1.64□□□□□ -2.15
USP3-209ENST00000558925 TAOK1Q7L7X3 1001 aa1.64□□□□□ -2.15
USP3-209ENST00000558925 HAUS6Q7Z4H7 955 aa1.64□□□□□ -2.15
USP3-209ENST00000558925 CAMKMTQ7Z624 323 aa1.64□□□□□ -2.15
USP3-209ENST00000558925 ANKRD23Q86SG2 305 aa1.64□□□□□ -2.15
USP3-209ENST00000558925 LDB1Q86U70 411 aaPredicted RBP1.64□□□□□ -2.15
USP3-209ENST00000558925 CCDC190Q86UF4 302 aa1.64□□□□□ -2.15
Retrieved 100 of 20,778 RNA–protein pairs in 41.6 ms