RNA–Protein interactions for RNA: ENST00000557958.1

LDLR-206, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 1,881 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-206ENST00000557958 PLPP6Q8IY26 295 aa16.76■□□□□ 0.27
LDLR-206ENST00000557958 OSCP1Q8WVF1 389 aa16.76■□□□□ 0.27
LDLR-206ENST00000557958 SGF29Q96ES7 293 aa16.76■□□□□ 0.27
LDLR-206ENST00000557958 FAR2Q96K12 515 aa16.76■□□□□ 0.27
LDLR-206ENST00000557958 KXD1Q9BQD3 176 aa16.76■□□□□ 0.27
LDLR-206ENST00000557958 EBF4Q9BQW3 602 aa16.76■□□□□ 0.27
LDLR-206ENST00000557958 UNKQ9C0B0 810 aaKnown RBP16.76■□□□□ 0.27
LDLR-206ENST00000557958 TFB2MQ9H5Q4 396 aaKnown RBP16.76■□□□□ 0.27
LDLR-206ENST00000557958 ALG9Q9H6U8 611 aa16.76■□□□□ 0.27
LDLR-206ENST00000557958 COG4Q9H9E3 785 aa16.76■□□□□ 0.27
LDLR-206ENST00000557958 SDAD1Q9NVU7 687 aaKnown RBP eCLIP16.76■□□□□ 0.271e-6■■■□□ 18
LDLR-206ENST00000557958 TRIM33Q9UPN9 1127 aa16.76■□□□□ 0.27
LDLR-206ENST00000557958 FNDC3AQ9Y2H6 1198 aaKnown RBP16.76■□□□□ 0.27
LDLR-206ENST00000557958 PCDHB1Q9Y5F3 818 aa16.76■□□□□ 0.27
LDLR-206ENST00000557958 ANKRD36A6QL64 1941 aa16.75■□□□□ 0.27
LDLR-206ENST00000557958 TMEM265A0A087WTH1 108 aa16.75■□□□□ 0.27
LDLR-206ENST00000557958 A8MT66 165 aa16.75■□□□□ 0.27
LDLR-206ENST00000557958 ALPIP09923 528 aa16.75■□□□□ 0.27
LDLR-206ENST00000557958 ARSAP15289 507 aa16.75■□□□□ 0.27
LDLR-206ENST00000557958 CD1DP15813 335 aa16.75■□□□□ 0.27
LDLR-206ENST00000557958 NFKBIAP25963 317 aa16.75■□□□□ 0.27
LDLR-206ENST00000557958 CTSOP43234 321 aaPredicted RBP16.75■□□□□ 0.27
LDLR-206ENST00000557958 PTPN5P54829 565 aa16.75■□□□□ 0.27
LDLR-206ENST00000557958 KCNJ2P63252 427 aa16.75■□□□□ 0.27
LDLR-206ENST00000557958 NFKB2Q00653 900 aa16.75■□□□□ 0.27
LDLR-206ENST00000557958 DHCR24Q15392 516 aa16.75■□□□□ 0.27
LDLR-206ENST00000557958 PSAPL1Q6NUJ1 521 aa16.75■□□□□ 0.27
LDLR-206ENST00000557958 KIF2BQ8N4N8 673 aa16.75■□□□□ 0.27
LDLR-206ENST00000557958 KCNJ9Q92806 393 aa16.75■□□□□ 0.27
LDLR-206ENST00000557958 PTCD3Q96EY7 689 aaKnown RBP16.75■□□□□ 0.27
LDLR-206ENST00000557958 ASIC4Q96FT7 647 aa16.75■□□□□ 0.27
LDLR-206ENST00000557958 SMIM14Q96QK8 99 aa16.75■□□□□ 0.27
LDLR-206ENST00000557958 LYSMD1Q96S90 227 aa16.75■□□□□ 0.27
LDLR-206ENST00000557958 DERL2Q9GZP9 239 aa16.75■□□□□ 0.27
LDLR-206ENST00000557958 THG1LQ9NWX6 298 aaKnown RBP16.75■□□□□ 0.27
LDLR-206ENST00000557958 TRMT6Q9UJA5 497 aaKnown RBP16.75■□□□□ 0.27
LDLR-206ENST00000557958 XIRP2A4UGR9 3374 aa16.75■□□□□ 0.27
LDLR-206ENST00000557958 E5RI56 91 aa16.74■□□□□ 0.27
LDLR-206ENST00000557958 MATN2O00339 956 aa16.74■□□□□ 0.27
LDLR-206ENST00000557958 CHRNGP07510 517 aa16.74■□□□□ 0.27
LDLR-206ENST00000557958 MTHFRP42898 656 aa16.74■□□□□ 0.27
LDLR-206ENST00000557958 CCNHP51946 323 aaPredicted RBP16.74■□□□□ 0.27
LDLR-206ENST00000557958 POLR2LP62875 67 aaKnown RBP16.74■□□□□ 0.27
LDLR-206ENST00000557958 ELF3P78545 371 aaPredicted RBP16.74■□□□□ 0.27
LDLR-206ENST00000557958 XIAPP98170 497 aa16.74■□□□□ 0.27
LDLR-206ENST00000557958 GALNT1Q10472 559 aaPredicted RBP16.74■□□□□ 0.27
LDLR-206ENST00000557958 ZDHHC20Q5W0Z9 365 aa16.74■□□□□ 0.27
LDLR-206ENST00000557958 GRAMD4Q6IC98 578 aa16.74■□□□□ 0.27
LDLR-206ENST00000557958 EPGNQ6UW88 154 aa16.74■□□□□ 0.27
LDLR-206ENST00000557958 TMEM207Q6UWW9 146 aa16.74■□□□□ 0.27
LDLR-206ENST00000557958 ACAD11Q709F0 780 aa16.74■□□□□ 0.27
LDLR-206ENST00000557958 Q7L0L9 218 aa16.74■□□□□ 0.27
LDLR-206ENST00000557958 TTC7BQ86TV6 843 aa16.74■□□□□ 0.27
LDLR-206ENST00000557958 ISCA2Q86U28 154 aa16.74■□□□□ 0.27
LDLR-206ENST00000557958 YAF2Q8IY57 180 aa16.74■□□□□ 0.27
LDLR-206ENST00000557958 PIANPQ8IYJ0 282 aa16.74■□□□□ 0.27
LDLR-206ENST00000557958 PNPLA1Q8N8W4 532 aa16.74■□□□□ 0.27
LDLR-206ENST00000557958 SUV39H2Q9H5I1 410 aa16.74■□□□□ 0.27
LDLR-206ENST00000557958 ARL8BQ9NVJ2 186 aa16.74■□□□□ 0.27
LDLR-206ENST00000557958 OAS3Q9Y6K5 1087 aaKnown RBP16.74■□□□□ 0.27
LDLR-206ENST00000557958 NUMBLQ9Y6R0 609 aa16.74■□□□□ 0.27
LDLR-206ENST00000557958 TRPC5OSA6NMA1 111 aa16.73■□□□□ 0.27
LDLR-206ENST00000557958 SYCE1LA8MT33 242 aa16.73■□□□□ 0.27
LDLR-206ENST00000557958 ZNF195O14628 629 aa16.73■□□□□ 0.27
LDLR-206ENST00000557958 TRIM24O15164 1050 aa16.73■□□□□ 0.27
LDLR-206ENST00000557958 PRAMEF1O95521 474 aa16.73■□□□□ 0.27
LDLR-206ENST00000557958 ADH1CP00326 375 aa16.73■□□□□ 0.27
LDLR-206ENST00000557958 PRSS56P0CW18 603 aa16.73■□□□□ 0.27
LDLR-206ENST00000557958 ZNF7P17097 686 aaPredicted RBP16.73■□□□□ 0.27
LDLR-206ENST00000557958 MPSTP25325 297 aa16.73■□□□□ 0.27
LDLR-206ENST00000557958 HNF1BP35680 557 aa16.73■□□□□ 0.27
LDLR-206ENST00000557958 PARM1Q6UWI2 310 aa16.73■□□□□ 0.27
LDLR-206ENST00000557958 TPRG1Q6ZUI0 275 aa16.73■□□□□ 0.27
LDLR-206ENST00000557958 SNX20Q7Z614 316 aa16.73■□□□□ 0.27
LDLR-206ENST00000557958 CBARPQ8N350 705 aaPredicted RBP16.73■□□□□ 0.27
LDLR-206ENST00000557958 STAG3L4Q8TBR4 150 aa16.73■□□□□ 0.27
LDLR-206ENST00000557958 SLC7A6OSQ96CW6 309 aaPredicted RBP16.73■□□□□ 0.27
LDLR-206ENST00000557958 ECHDC3Q96DC8 303 aa16.73■□□□□ 0.27
LDLR-206ENST00000557958 BIRC8Q96P09 236 aa16.73■□□□□ 0.27
LDLR-206ENST00000557958 PLA2G2FQ9BZM2 168 aa16.73■□□□□ 0.27
LDLR-206ENST00000557958 ZDHHC6Q9H6R6 413 aa16.73■□□□□ 0.27
LDLR-206ENST00000557958 ARMCX1Q9P291 453 aa16.73■□□□□ 0.27
LDLR-206ENST00000557958 TAGLN3Q9UI15 199 aa16.73■□□□□ 0.27
LDLR-206ENST00000557958 FAM50BQ9Y247 325 aa16.73■□□□□ 0.27
LDLR-206ENST00000557958 CAPN14A8MX76 684 aa16.73■□□□□ 0.27
LDLR-206ENST00000557958 H3BMM5 538 aa16.73■□□□□ 0.27
LDLR-206ENST00000557958 PRMT5O14744 637 aaPredicted RBP16.73■□□□□ 0.27
LDLR-206ENST00000557958 ZBTB14O43829 449 aa16.73■□□□□ 0.27
LDLR-206ENST00000557958 BNIP3LO60238 219 aa16.73■□□□□ 0.27
LDLR-206ENST00000557958 LAMP2P13473 410 aa16.73■□□□□ 0.27
LDLR-206ENST00000557958 AOC1P19801 751 aa16.73■□□□□ 0.27
LDLR-206ENST00000557958 IMPDH1P20839 514 aa16.73■□□□□ 0.27
LDLR-206ENST00000557958 SPAM1P38567 509 aa16.73■□□□□ 0.27
LDLR-206ENST00000557958 NAA20P61599 178 aa16.73■□□□□ 0.27
LDLR-206ENST00000557958 TIAL1Q01085 375 aaKnown RBP eCLIP16.73■□□□□ 0.27
LDLR-206ENST00000557958 SNCBQ16143 134 aa16.73■□□□□ 0.27
LDLR-206ENST00000557958 EML3Q32P44 896 aa16.73■□□□□ 0.27
LDLR-206ENST00000557958 GPR33Q49SQ1 333 aa16.73■□□□□ 0.27
LDLR-206ENST00000557958 ASTLQ6HA08 431 aaPredicted RBP16.73■□□□□ 0.27
LDLR-206ENST00000557958 VITQ6UXI7 678 aa16.73■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms