RNA–Protein interactions for RNA: ENST00000557302.1

SHMT2-228, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 457 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-228ENST00000557302 RNF14Q9UBS8 474 aa13.49□□□□□ -0.25
SHMT2-228ENST00000557302 CNOT6Q9ULM6 557 aaKnown RBP13.49□□□□□ -0.25
SHMT2-228ENST00000557302 SLC17A4Q9Y2C5 497 aa13.49□□□□□ -0.25
SHMT2-228ENST00000557302 TMEM98Q9Y2Y6 226 aa13.49□□□□□ -0.25
SHMT2-228ENST00000557302 KCTD3Q9Y597 815 aa13.49□□□□□ -0.25
SHMT2-228ENST00000557302 PCNX2A6NKB5 2137 aa13.48□□□□□ -0.25
SHMT2-228ENST00000557302 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP13.48□□□□□ -0.25
SHMT2-228ENST00000557302 SPAARA0A1B0GVQ0 90 aa13.48□□□□□ -0.25
SHMT2-228ENST00000557302 LMO7DNF2Z398 122 aa13.48□□□□□ -0.25
SHMT2-228ENST00000557302 SIGLEC6O43699 453 aa13.48□□□□□ -0.25
SHMT2-228ENST00000557302 SLC25A14O95258 325 aaPredicted RBP13.48□□□□□ -0.25
SHMT2-228ENST00000557302 ECEL1O95672 775 aa13.48□□□□□ -0.25
SHMT2-228ENST00000557302 LDOC1O95751 146 aaPredicted RBP13.48□□□□□ -0.25
SHMT2-228ENST00000557302 IVLP07476 585 aa13.48□□□□□ -0.25
SHMT2-228ENST00000557302 ANXA6P08133 673 aa13.48□□□□□ -0.25
SHMT2-228ENST00000557302 POLD2P49005 469 aa13.48□□□□□ -0.25
SHMT2-228ENST00000557302 ZNF140P52738 457 aaPredicted RBP13.48□□□□□ -0.25
SHMT2-228ENST00000557302 SIM1P81133 766 aaPredicted RBP13.48□□□□□ -0.25
SHMT2-228ENST00000557302 GPS1Q13098 491 aa13.48□□□□□ -0.25
SHMT2-228ENST00000557302 PTPRCAPQ14761 206 aa13.48□□□□□ -0.25
SHMT2-228ENST00000557302 POU6F1Q14863 301 aa13.48□□□□□ -0.25
SHMT2-228ENST00000557302 FAM151BQ6UXP7 276 aa13.48□□□□□ -0.25
SHMT2-228ENST00000557302 SYT10Q6XYQ8 523 aa13.48□□□□□ -0.25
SHMT2-228ENST00000557302 GLRX5Q86SX6 157 aa13.48□□□□□ -0.25
SHMT2-228ENST00000557302 PHYKPLQ8IUZ5 450 aa13.48□□□□□ -0.25
SHMT2-228ENST00000557302 GLYATL1Q969I3 302 aa13.48□□□□□ -0.25
SHMT2-228ENST00000557302 CNDP2Q96KP4 475 aaKnown RBP13.48□□□□□ -0.25
SHMT2-228ENST00000557302 VPS35Q96QK1 796 aa13.48□□□□□ -0.25
SHMT2-228ENST00000557302 C19orf43Q9BQ61 176 aa13.48□□□□□ -0.25
SHMT2-228ENST00000557302 CLPBQ9H078 707 aa13.48□□□□□ -0.25
SHMT2-228ENST00000557302 DDX47Q9H0S4 455 aaKnown RBP13.48□□□□□ -0.25
SHMT2-228ENST00000557302 CASS4Q9NQ75 786 aa13.48□□□□□ -0.25
SHMT2-228ENST00000557302 VPS18Q9P253 973 aa13.48□□□□□ -0.25
SHMT2-228ENST00000557302 FKBPLQ9UIM3 349 aa13.48□□□□□ -0.25
SHMT2-228ENST00000557302 APPL1Q9UKG1 709 aa13.48□□□□□ -0.25
SHMT2-228ENST00000557302 SUFUQ9UMX1 484 aa13.48□□□□□ -0.25
SHMT2-228ENST00000557302 DOLKQ9UPQ8 538 aa13.48□□□□□ -0.25
SHMT2-228ENST00000557302 OAS3Q9Y6K5 1087 aaKnown RBP13.48□□□□□ -0.25
SHMT2-228ENST00000557302 TRIM38O00635 465 aa13.47□□□□□ -0.25
SHMT2-228ENST00000557302 TPP1O14773 563 aa13.47□□□□□ -0.25
SHMT2-228ENST00000557302 TNFSF14O43557 240 aa13.47□□□□□ -0.25
SHMT2-228ENST00000557302 LDB2O43679 373 aa13.47□□□□□ -0.25
SHMT2-228ENST00000557302 PRAMEF1O95521 474 aa13.47□□□□□ -0.25
SHMT2-228ENST00000557302 CELA2BP08218 269 aaPredicted RBP13.47□□□□□ -0.25
SHMT2-228ENST00000557302 GIMD1P0DJR0 217 aa13.47□□□□□ -0.25
SHMT2-228ENST00000557302 TPSB2P20231 275 aa13.47□□□□□ -0.25
SHMT2-228ENST00000557302 HADHAP40939 763 aa13.47□□□□□ -0.25
SHMT2-228ENST00000557302 GRIA1P42261 906 aa13.47□□□□□ -0.25
SHMT2-228ENST00000557302 GNPDA1P46926 289 aa13.47□□□□□ -0.25
SHMT2-228ENST00000557302 CDK16Q00536 496 aa13.47□□□□□ -0.25
SHMT2-228ENST00000557302 ITGA9Q13797 1035 aa13.47□□□□□ -0.25
SHMT2-228ENST00000557302 PPP1R7Q15435 360 aa13.47□□□□□ -0.25
SHMT2-228ENST00000557302 TCEA2Q15560 299 aa13.47□□□□□ -0.25
SHMT2-228ENST00000557302 TPSAB1Q15661 275 aa13.47□□□□□ -0.25
SHMT2-228ENST00000557302 CHRNA6Q15825 494 aa13.47□□□□□ -0.25
SHMT2-228ENST00000557302 KCTD19Q17RG1 926 aaPredicted RBP13.47□□□□□ -0.25
SHMT2-228ENST00000557302 DEFB133Q30KQ1 61 aa13.47□□□□□ -0.25
SHMT2-228ENST00000557302 ATP13A5Q4VNC0 1218 aa13.47□□□□□ -0.25
SHMT2-228ENST00000557302 MARK2Q7KZI7 788 aaKnown RBP13.47□□□□□ -0.25
SHMT2-228ENST00000557302 GKN2Q86XP6 184 aa13.47□□□□□ -0.25
SHMT2-228ENST00000557302 GALNT13Q8IUC8 556 aa13.47□□□□□ -0.25
SHMT2-228ENST00000557302 SDR16C5Q8N3Y7 309 aa13.47□□□□□ -0.25
SHMT2-228ENST00000557302 OR13C4Q8NGS5 318 aa13.47□□□□□ -0.25
SHMT2-228ENST00000557302 PTCD2Q8WV60 388 aaKnown RBP13.47□□□□□ -0.25
SHMT2-228ENST00000557302 SCG3Q8WXD2 468 aaKnown RBP13.47□□□□□ -0.25
SHMT2-228ENST00000557302 SCARF2Q96GP6 870 aaPredicted RBP13.47□□□□□ -0.25
SHMT2-228ENST00000557302 C16orf45Q96MC5 204 aaPredicted RBP13.47□□□□□ -0.25
SHMT2-228ENST00000557302 RUNDC3BQ96NL0 473 aa13.47□□□□□ -0.25
SHMT2-228ENST00000557302 TMEM168Q9H0V1 697 aa13.47□□□□□ -0.25
SHMT2-228ENST00000557302 ARFGAP3Q9NP61 516 aa13.47□□□□□ -0.25
SHMT2-228ENST00000557302 TRNAU1APQ9NX07 287 aaKnown RBP13.47□□□□□ -0.25
SHMT2-228ENST00000557302 TDRD6O60522 2096 aaKnown RBP13.47□□□□□ -0.25
SHMT2-228ENST00000557302 ARID1BQ8NFD5 2236 aaPredicted RBP13.46□□□□□ -0.25
SHMT2-228ENST00000557302 HEATR9A2RTY3 570 aa13.46□□□□□ -0.25
SHMT2-228ENST00000557302 GPR89AB7ZAQ6 455 aa13.46□□□□□ -0.25
SHMT2-228ENST00000557302 CCDC188H7C350 402 aa13.46□□□□□ -0.25
SHMT2-228ENST00000557302 AP3B1O00203 1094 aa13.46□□□□□ -0.25
SHMT2-228ENST00000557302 GAPDHSO14556 408 aaPredicted RBP13.46□□□□□ -0.25
SHMT2-228ENST00000557302 YY2O15391 372 aa13.46□□□□□ -0.25
SHMT2-228ENST00000557302 FUCA1P04066 466 aa13.46□□□□□ -0.25
SHMT2-228ENST00000557302 GPR89BP0CG08 455 aa13.46□□□□□ -0.25
SHMT2-228ENST00000557302 TERF1P54274 439 aa13.46□□□□□ -0.25
SHMT2-228ENST00000557302 SARNPP82979 210 aaKnown RBP13.46□□□□□ -0.25
SHMT2-228ENST00000557302 TMPRSS15P98073 1019 aa13.46□□□□□ -0.25
SHMT2-228ENST00000557302 ILF3Q12906 894 aaKnown RBP eCLIP13.46□□□□□ -0.25
SHMT2-228ENST00000557302 LAMB3Q13751 1172 aa13.46□□□□□ -0.25
SHMT2-228ENST00000557302 PROX2Q3B8N5 592 aa13.46□□□□□ -0.25
SHMT2-228ENST00000557302 CERCAMQ5T4B2 595 aa13.46□□□□□ -0.25
SHMT2-228ENST00000557302 ZCCHC8Q6NZY4 707 aaKnown RBP13.46□□□□□ -0.25
SHMT2-228ENST00000557302 LVRNQ6Q4G3 990 aa13.46□□□□□ -0.25
SHMT2-228ENST00000557302 TAF8Q7Z7C8 310 aa13.46□□□□□ -0.25
SHMT2-228ENST00000557302 KLHL7Q8IXQ5 586 aa13.46□□□□□ -0.25
SHMT2-228ENST00000557302 FAM181AQ8N9Y4 354 aa13.46□□□□□ -0.25
SHMT2-228ENST00000557302 GDAP1Q8TB36 358 aa13.46□□□□□ -0.25
SHMT2-228ENST00000557302 ZNF398Q8TD17 642 aa13.46□□□□□ -0.25
SHMT2-228ENST00000557302 STYXQ8WUJ0 223 aa13.46□□□□□ -0.25
SHMT2-228ENST00000557302 DNAJC1Q96KC8 554 aaKnown RBP13.46□□□□□ -0.25
SHMT2-228ENST00000557302 OR2M4Q96R27 311 aa13.46□□□□□ -0.25
SHMT2-228ENST00000557302 GSDMCQ9BYG8 508 aa13.46□□□□□ -0.25
SHMT2-228ENST00000557302 OR2AG1Q9H205 316 aa13.46□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms