RNA–Protein interactions for RNA: ENST00000556486.5

SCFD1-220, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 974 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-220ENST00000556486 SQSTM1Q13501 440 aa10.02□□□□□ -0.81
SCFD1-220ENST00000556486 ARHGEF7Q14155 803 aa10.02□□□□□ -0.81
SCFD1-220ENST00000556486 ZNF800Q2TB10 664 aaPredicted RBP eCLIP10.02□□□□□ -0.81
SCFD1-220ENST00000556486 DEFB109BQ30KR1 87 aa10.02□□□□□ -0.81
SCFD1-220ENST00000556486 CERCAMQ5T4B2 595 aa10.02□□□□□ -0.81
SCFD1-220ENST00000556486 AFMIDQ63HM1 303 aa10.02□□□□□ -0.81
SCFD1-220ENST00000556486 PPP1R2P3Q6NXS1 205 aa10.02□□□□□ -0.81
SCFD1-220ENST00000556486 TAF8Q7Z7C8 310 aa10.02□□□□□ -0.81
SCFD1-220ENST00000556486 FAM46DQ8NEK8 389 aa10.02□□□□□ -0.81
SCFD1-220ENST00000556486 GPR156Q8NFN8 814 aa10.02□□□□□ -0.81
SCFD1-220ENST00000556486 ATL2Q8NHH9 583 aa10.02□□□□□ -0.81
SCFD1-220ENST00000556486 CCL4L1Q8NHW4 92 aa10.02□□□□□ -0.81
SCFD1-220ENST00000556486 FUBP1Q96AE4 644 aaKnown RBP10.02□□□□□ -0.81
SCFD1-220ENST00000556486 MIB2Q96AX9 1013 aa10.02□□□□□ -0.81
SCFD1-220ENST00000556486 ABHD17AQ96GS6 310 aa10.02□□□□□ -0.81
SCFD1-220ENST00000556486 ERGIC2Q96RQ1 377 aa10.02□□□□□ -0.81
SCFD1-220ENST00000556486 NUDT22Q9BRQ3 303 aa10.02□□□□□ -0.81
SCFD1-220ENST00000556486 SYT11Q9BT88 431 aa10.02□□□□□ -0.81
SCFD1-220ENST00000556486 UBA2Q9UBT2 640 aaPredicted RBP10.02□□□□□ -0.81
SCFD1-220ENST00000556486 KLQ9UEF7 1012 aa10.02□□□□□ -0.81
SCFD1-220ENST00000556486 LIMA1Q9UHB6 759 aaKnown RBP10.02□□□□□ -0.81
SCFD1-220ENST00000556486 APPL1Q9UKG1 709 aa10.02□□□□□ -0.81
SCFD1-220ENST00000556486 ATP8A1Q9Y2Q0 1164 aa10.02□□□□□ -0.81
SCFD1-220ENST00000556486 PRR19A6NJB7 356 aa10.01□□□□□ -0.81
SCFD1-220ENST00000556486 J3QW42 95 aa10.01□□□□□ -0.81
SCFD1-220ENST00000556486 TNFRSF10CO14798 259 aa10.01□□□□□ -0.81
SCFD1-220ENST00000556486 INSIG1O15503 277 aa10.01□□□□□ -0.81
SCFD1-220ENST00000556486 B4GAT1O43505 415 aa10.01□□□□□ -0.81
SCFD1-220ENST00000556486 BUB1BO60566 1050 aaPredicted RBP10.01□□□□□ -0.81
SCFD1-220ENST00000556486 PIGNO95427 931 aa10.01□□□□□ -0.81
SCFD1-220ENST00000556486 BPNT1O95861 308 aa10.01□□□□□ -0.81
SCFD1-220ENST00000556486 PCCBP05166 539 aa10.01□□□□□ -0.81
SCFD1-220ENST00000556486 FGF3P11487 239 aaPredicted RBP10.01□□□□□ -0.81
SCFD1-220ENST00000556486 GNLYP22749 145 aa10.01□□□□□ -0.81
SCFD1-220ENST00000556486 ALDH4A1P30038 563 aa10.01□□□□□ -0.81
SCFD1-220ENST00000556486 TRIM23P36406 574 aa10.01□□□□□ -0.81
SCFD1-220ENST00000556486 ZNF135P52742 658 aaPredicted RBP10.01□□□□□ -0.81
SCFD1-220ENST00000556486 MAZP56270 477 aaKnown RBP10.01□□□□□ -0.81
SCFD1-220ENST00000556486 KIAA1024LP59773 190 aa10.01□□□□□ -0.81
SCFD1-220ENST00000556486 GPLD1P80108 840 aa10.01□□□□□ -0.81
SCFD1-220ENST00000556486 INPP5AQ14642 412 aa10.01□□□□□ -0.81
SCFD1-220ENST00000556486 RFTN1Q14699 578 aaPredicted RBP10.01□□□□□ -0.81
SCFD1-220ENST00000556486 SYCP1Q15431 976 aa10.01□□□□□ -0.81
SCFD1-220ENST00000556486 NKAIN2Q5VXU1 208 aa10.01□□□□□ -0.81
SCFD1-220ENST00000556486 ERAP2Q6P179 960 aa10.01□□□□□ -0.81
SCFD1-220ENST00000556486 DNAJC24Q6P3W2 148 aa10.01□□□□□ -0.81
SCFD1-220ENST00000556486 OGFOD3Q6PK18 319 aa10.01□□□□□ -0.81
SCFD1-220ENST00000556486 APTXQ7Z2E3 356 aaKnown RBP10.01□□□□□ -0.81
SCFD1-220ENST00000556486 PHLDB2Q86SQ0 1253 aa10.01□□□□□ -0.81
SCFD1-220ENST00000556486 LSRQ86X29 649 aaPredicted RBP10.01□□□□□ -0.81
SCFD1-220ENST00000556486 ZSWIM9Q86XI8 627 aa10.01□□□□□ -0.81
SCFD1-220ENST00000556486 PSTKQ8IV42 348 aaKnown RBP10.01□□□□□ -0.81
SCFD1-220ENST00000556486 CACNA2D3Q8IZS8 1091 aa10.01□□□□□ -0.81
SCFD1-220ENST00000556486 ART4Q93070 314 aa10.01□□□□□ -0.81
SCFD1-220ENST00000556486 TMEM159Q96B96 161 aa10.01□□□□□ -0.81
SCFD1-220ENST00000556486 CCDC74BQ96LY2 380 aa10.01□□□□□ -0.81
SCFD1-220ENST00000556486 WDR92Q96MX6 357 aa10.01□□□□□ -0.81
SCFD1-220ENST00000556486 MCEEQ96PE7 176 aa10.01□□□□□ -0.81
SCFD1-220ENST00000556486 AGPAT1Q99943 283 aa10.01□□□□□ -0.81
SCFD1-220ENST00000556486 APOOQ9BUR5 198 aa10.01□□□□□ -0.81
SCFD1-220ENST00000556486 B3GNT4Q9C0J1 378 aa10.01□□□□□ -0.81
SCFD1-220ENST00000556486 CLEC4MQ9H2X3 399 aaPredicted RBP10.01□□□□□ -0.81
SCFD1-220ENST00000556486 ATP13A3Q9H7F0 1226 aa10.01□□□□□ -0.81
SCFD1-220ENST00000556486 MOSPD1Q9UJG1 213 aa10.01□□□□□ -0.81
SCFD1-220ENST00000556486 MYO6Q9UM54 1294 aa10.01□□□□□ -0.81
SCFD1-220ENST00000556486 TP53TG5Q9Y2B4 290 aa10.01□□□□□ -0.81
SCFD1-220ENST00000556486 B3GALT1Q9Y5Z6 326 aa10.01□□□□□ -0.81
SCFD1-220ENST00000556486 J3KR12 359 aa10□□□□□ -0.81
SCFD1-220ENST00000556486 CREB3O43889 395 aa10□□□□□ -0.81
SCFD1-220ENST00000556486 PRKCGP05129 697 aa10□□□□□ -0.81
SCFD1-220ENST00000556486 CCDC172P0C7W6 258 aa10□□□□□ -0.81
SCFD1-220ENST00000556486 GLB1P16278 677 aa10□□□□□ -0.81
SCFD1-220ENST00000556486 DESP17661 470 aa10□□□□□ -0.81
SCFD1-220ENST00000556486 XPAP23025 273 aaPredicted RBP10□□□□□ -0.81
SCFD1-220ENST00000556486 KELP23276 732 aa10□□□□□ -0.81
SCFD1-220ENST00000556486 OAS2P29728 719 aaKnown RBP10□□□□□ -0.81
SCFD1-220ENST00000556486 COPB1P53618 953 aaKnown RBP10□□□□□ -0.81
SCFD1-220ENST00000556486 TPI1P60174 286 aa10□□□□□ -0.81
SCFD1-220ENST00000556486 OGDHQ02218 1023 aa10□□□□□ -0.81
SCFD1-220ENST00000556486 RALGDSQ12967 914 aa10□□□□□ -0.81
SCFD1-220ENST00000556486 C14orf28Q4W4Y0 310 aa10□□□□□ -0.81
SCFD1-220ENST00000556486 LACTB2Q53H82 288 aaPredicted RBP10□□□□□ -0.81
SCFD1-220ENST00000556486 ACAD10Q6JQN1 1059 aa10□□□□□ -0.81
SCFD1-220ENST00000556486 SCYL2Q6P3W7 929 aa10□□□□□ -0.81
SCFD1-220ENST00000556486 PIM3Q86V86 326 aa10□□□□□ -0.81
SCFD1-220ENST00000556486 FAM129CQ86XR2 697 aa10□□□□□ -0.81
SCFD1-220ENST00000556486 ZNF354CQ86Y25 554 aa10□□□□□ -0.81
SCFD1-220ENST00000556486 CAMK1DQ8IU85 385 aa10□□□□□ -0.81
SCFD1-220ENST00000556486 NRSN1Q8IZ57 195 aa10□□□□□ -0.81
SCFD1-220ENST00000556486 MCOLN2Q8IZK6 566 aa10□□□□□ -0.81
SCFD1-220ENST00000556486 PLA2G15Q8NCC3 412 aa10□□□□□ -0.81
SCFD1-220ENST00000556486 NEK11Q8NG66 645 aa10□□□□□ -0.81
SCFD1-220ENST00000556486 FNIP1Q8TF40 1166 aa10□□□□□ -0.81
SCFD1-220ENST00000556486 OR1E3Q8WZA6 343 aa10□□□□□ -0.81
SCFD1-220ENST00000556486 EXOC2Q96KP1 924 aa10□□□□□ -0.81
SCFD1-220ENST00000556486 PSKH2Q96QS6 385 aa10□□□□□ -0.81
SCFD1-220ENST00000556486 CTRCQ99895 268 aa10□□□□□ -0.81
SCFD1-220ENST00000556486 NCAPGQ9BPX3 1015 aa10□□□□□ -0.81
SCFD1-220ENST00000556486 TMEM168Q9H0V1 697 aa10□□□□□ -0.81
SCFD1-220ENST00000556486 DPEP2Q9H4A9 486 aa10□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms