RNA–Protein interactions for RNA: ENST00000554656.5

SHMT2-215, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 817 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-215ENST00000554656 RARAP10276 462 aa10.54□□□□□ -0.72
SHMT2-215ENST00000554656 LIPCP11150 499 aa10.54□□□□□ -0.72
SHMT2-215ENST00000554656 KELP23276 732 aa10.54□□□□□ -0.72
SHMT2-215ENST00000554656 CXCR5P32302 372 aa10.54□□□□□ -0.72
SHMT2-215ENST00000554656 PTPN7P35236 360 aa10.54□□□□□ -0.72
SHMT2-215ENST00000554656 POLD2P49005 469 aa10.54□□□□□ -0.72
SHMT2-215ENST00000554656 RENBPP51606 427 aa10.54□□□□□ -0.72
SHMT2-215ENST00000554656 ARSDP51689 593 aa10.54□□□□□ -0.72
SHMT2-215ENST00000554656 ZNF135P52742 658 aaPredicted RBP10.54□□□□□ -0.72
SHMT2-215ENST00000554656 OR1D5P58170 312 aa10.54□□□□□ -0.72
SHMT2-215ENST00000554656 COPS2P61201 443 aa10.54□□□□□ -0.72
SHMT2-215ENST00000554656 POLR2LP62875 67 aaKnown RBP10.54□□□□□ -0.72
SHMT2-215ENST00000554656 CDK3Q00526 305 aa10.54□□□□□ -0.72
SHMT2-215ENST00000554656 SLC25A11Q02978 314 aaKnown RBP10.54□□□□□ -0.72
SHMT2-215ENST00000554656 NR1D2Q14995 579 aa10.54□□□□□ -0.72
SHMT2-215ENST00000554656 HADHQ16836 314 aaKnown RBP10.54□□□□□ -0.72
SHMT2-215ENST00000554656 ERCC6LQ2NKX8 1250 aa10.54□□□□□ -0.72
SHMT2-215ENST00000554656 TEX35Q5T0J7 233 aa10.54□□□□□ -0.72
SHMT2-215ENST00000554656 DENND2CQ68D51 928 aa10.54□□□□□ -0.72
SHMT2-215ENST00000554656 TMCO3Q6UWJ1 677 aa10.54□□□□□ -0.72
SHMT2-215ENST00000554656 ZNF574Q6ZN55 896 aaPredicted RBP10.54□□□□□ -0.72
SHMT2-215ENST00000554656 Q6ZVL8 140 aa10.54□□□□□ -0.72
SHMT2-215ENST00000554656 CPNE8Q86YQ8 564 aa10.54□□□□□ -0.72
SHMT2-215ENST00000554656 LZTR1Q8N653 840 aa10.54□□□□□ -0.72
SHMT2-215ENST00000554656 PAF1Q8N7H5 531 aa10.54□□□□□ -0.72
SHMT2-215ENST00000554656 EXD1Q8NHP7 514 aa10.54□□□□□ -0.72
SHMT2-215ENST00000554656 PDCD6IPQ8WUM4 868 aaKnown RBP10.54□□□□□ -0.72
SHMT2-215ENST00000554656 HSPH1Q92598 858 aa10.54□□□□□ -0.72
SHMT2-215ENST00000554656 ALG3Q92685 438 aa10.54□□□□□ -0.72
SHMT2-215ENST00000554656 KRT35Q92764 455 aa10.54□□□□□ -0.72
SHMT2-215ENST00000554656 PMEPA1Q969W9 287 aa10.54□□□□□ -0.72
SHMT2-215ENST00000554656 MED8Q96G25 268 aa10.54□□□□□ -0.72
SHMT2-215ENST00000554656 RBM41Q96IZ5 413 aaKnown RBP10.54□□□□□ -0.72
SHMT2-215ENST00000554656 MCCC1Q96RQ3 725 aaPredicted RBP10.54□□□□□ -0.72
SHMT2-215ENST00000554656 NUDT22Q9BRQ3 303 aa10.54□□□□□ -0.72
SHMT2-215ENST00000554656 ZWILCHQ9H900 591 aa10.54□□□□□ -0.72
SHMT2-215ENST00000554656 PCDH18Q9HCL0 1135 aa10.54□□□□□ -0.72
SHMT2-215ENST00000554656 PHPT1Q9NRX4 125 aaPredicted RBP10.54□□□□□ -0.72
SHMT2-215ENST00000554656 TAAR2Q9P1P5 351 aa10.54□□□□□ -0.72
SHMT2-215ENST00000554656 SUFUQ9UMX1 484 aa10.54□□□□□ -0.72
SHMT2-215ENST00000554656 PLEKHM1Q9Y4G2 1056 aa10.54□□□□□ -0.72
SHMT2-215ENST00000554656 BSNQ9UPA5 3926 aa10.54□□□□□ -0.72
SHMT2-215ENST00000554656 MFSD11O43934 449 aa10.53□□□□□ -0.72
SHMT2-215ENST00000554656 PGLSO95336 258 aa10.53□□□□□ -0.72
SHMT2-215ENST00000554656 ECEL1O95672 775 aa10.53□□□□□ -0.72
SHMT2-215ENST00000554656 PDHA1P08559 390 aa10.53□□□□□ -0.72
SHMT2-215ENST00000554656 CD48P09326 243 aa10.53□□□□□ -0.72
SHMT2-215ENST00000554656 CCL4P13236 92 aa10.53□□□□□ -0.72
SHMT2-215ENST00000554656 CTPS1P17812 591 aa10.53□□□□□ -0.72
SHMT2-215ENST00000554656 MCM3P25205 808 aa10.53□□□□□ -0.72
SHMT2-215ENST00000554656 CSF2RBP32927 897 aa10.53□□□□□ -0.72
SHMT2-215ENST00000554656 HSPA9P38646 679 aaKnown RBP10.53□□□□□ -0.72
SHMT2-215ENST00000554656 ADCY8P40145 1251 aa10.53□□□□□ -0.72
SHMT2-215ENST00000554656 ARL4AP40617 200 aa10.53□□□□□ -0.72
SHMT2-215ENST00000554656 GNPDA1P46926 289 aa10.53□□□□□ -0.72
SHMT2-215ENST00000554656 MMRN1Q13201 1228 aa10.53□□□□□ -0.72
SHMT2-215ENST00000554656 ARHGEF7Q14155 803 aa10.53□□□□□ -0.72
SHMT2-215ENST00000554656 MAP9Q49MG5 647 aa10.53□□□□□ -0.72
SHMT2-215ENST00000554656 PHF19Q5T6S3 580 aa10.53□□□□□ -0.72
SHMT2-215ENST00000554656 SLC30A9Q6PML9 568 aa10.53□□□□□ -0.72
SHMT2-215ENST00000554656 TECPR1Q7Z6L1 1165 aa10.53□□□□□ -0.72
SHMT2-215ENST00000554656 TRIM74Q86UV6 250 aa10.53□□□□□ -0.72
SHMT2-215ENST00000554656 DTX1Q86Y01 620 aa10.53□□□□□ -0.72
SHMT2-215ENST00000554656 NAGSQ8N159 534 aa10.53□□□□□ -0.72
SHMT2-215ENST00000554656 ATPAF2Q8N5M1 289 aa10.53□□□□□ -0.72
SHMT2-215ENST00000554656 LRRN4CLQ8ND94 238 aa10.53□□□□□ -0.72
SHMT2-215ENST00000554656 ZDHHC1Q8WTX9 485 aa10.53□□□□□ -0.72
SHMT2-215ENST00000554656 PIH1D2Q8WWB5 315 aa10.53□□□□□ -0.72
SHMT2-215ENST00000554656 HTR3CQ8WXA8 447 aa10.53□□□□□ -0.72
SHMT2-215ENST00000554656 ANKRD7Q92527 254 aa10.53□□□□□ -0.72
SHMT2-215ENST00000554656 USP7Q93009 1102 aa10.53□□□□□ -0.72
SHMT2-215ENST00000554656 SCARF2Q96GP6 870 aaPredicted RBP10.53□□□□□ -0.72
SHMT2-215ENST00000554656 RUNDC3BQ96NL0 473 aa10.53□□□□□ -0.72
SHMT2-215ENST00000554656 WDR70Q9NW82 654 aa10.53□□□□□ -0.72
SHMT2-215ENST00000554656 PHTF1Q9UMS5 762 aa10.53□□□□□ -0.72
SHMT2-215ENST00000554656 SLC17A4Q9Y2C5 497 aa10.53□□□□□ -0.72
SHMT2-215ENST00000554656 EFR3BQ9Y2G0 817 aa10.53□□□□□ -0.72
SHMT2-215ENST00000554656 PPIL1Q9Y3C6 166 aa10.53□□□□□ -0.72
SHMT2-215ENST00000554656 PCDHGA4Q9Y5G9 962 aa10.53□□□□□ -0.72
SHMT2-215ENST00000554656 PCYT1BQ9Y5K3 369 aaPredicted RBP10.53□□□□□ -0.72
SHMT2-215ENST00000554656 IGHV5-10-1A0A0J9YXX1 117 aa10.52□□□□□ -0.73
SHMT2-215ENST00000554656 GOLGA6L10A0A0M3HER8 536 aa10.52□□□□□ -0.73
SHMT2-215ENST00000554656 CAPN8A6NHC0 703 aa10.52□□□□□ -0.73
SHMT2-215ENST00000554656 PSMD11O00231 422 aa10.52□□□□□ -0.73
SHMT2-215ENST00000554656 FZD6O60353 706 aa10.52□□□□□ -0.73
SHMT2-215ENST00000554656 ZRANB2O95218 330 aaKnown RBP eCLIP10.52□□□□□ -0.73
SHMT2-215ENST00000554656 CPNE6O95741 557 aa10.52□□□□□ -0.73
SHMT2-215ENST00000554656 FGGP02679 453 aa10.52□□□□□ -0.73
SHMT2-215ENST00000554656 IVLP07476 585 aa10.52□□□□□ -0.73
SHMT2-215ENST00000554656 IL4RP24394 825 aa10.52□□□□□ -0.73
SHMT2-215ENST00000554656 TEAD1P28347 426 aa10.52□□□□□ -0.73
SHMT2-215ENST00000554656 CD1CP29017 333 aa10.52□□□□□ -0.73
SHMT2-215ENST00000554656 MMP13P45452 471 aa10.52□□□□□ -0.73
SHMT2-215ENST00000554656 MARCKSL1P49006 195 aa10.52□□□□□ -0.73
SHMT2-215ENST00000554656 ARSEP51690 589 aa10.52□□□□□ -0.73
SHMT2-215ENST00000554656 MAPK10P53779 464 aa10.52□□□□□ -0.73
SHMT2-215ENST00000554656 CTBSQ01459 385 aa10.52□□□□□ -0.73
SHMT2-215ENST00000554656 ILF3Q12906 894 aaKnown RBP eCLIP10.52□□□□□ -0.73
SHMT2-215ENST00000554656 AMZ1Q400G9 498 aa10.52□□□□□ -0.73
SHMT2-215ENST00000554656 RAET1GQ6H3X3 334 aa10.52□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms