RNA–Protein interactions for RNA: ENST00000540469.5

SFSWAP-209, Transcript of splicing factor SWAP, humanhuman

TSL 3

Gene SFSWAP, Length 3,536 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-209ENST00000540469 PPP6CO00743 305 aa12.79□□□□□ -0.36
SFSWAP-209ENST00000540469 MFN2O95140 757 aa12.79□□□□□ -0.36
SFSWAP-209ENST00000540469 TRIM16O95361 564 aa12.79□□□□□ -0.36
SFSWAP-209ENST00000540469 PARNO95453 639 aaKnown RBP12.79□□□□□ -0.36
SFSWAP-209ENST00000540469 BMP4P12644 408 aa12.79□□□□□ -0.36
SFSWAP-209ENST00000540469 ICAM3P32942 547 aa12.79□□□□□ -0.36
SFSWAP-209ENST00000540469 ATP4BP51164 291 aa12.79□□□□□ -0.36
SFSWAP-209ENST00000540469 FPGSQ05932 587 aa12.79□□□□□ -0.36
SFSWAP-209ENST00000540469 USP51Q70EK9 711 aa12.79□□□□□ -0.36
SFSWAP-209ENST00000540469 FIG4Q92562 907 aa12.79□□□□□ -0.36
SFSWAP-209ENST00000540469 C11orf84Q9BUA3 381 aaPredicted RBP12.79□□□□□ -0.36
SFSWAP-209ENST00000540469 PCDHGA11Q9Y5H2 935 aa12.79□□□□□ -0.36
SFSWAP-209ENST00000540469 DNAJC15Q9Y5T4 150 aa12.79□□□□□ -0.36
SFSWAP-209ENST00000540469 ZNF99A8MXY4 864 aaPredicted RBP12.79□□□□□ -0.36
SFSWAP-209ENST00000540469 PSMD3O43242 534 aa12.79□□□□□ -0.36
SFSWAP-209ENST00000540469 TBX1O43435 398 aa12.79□□□□□ -0.36
SFSWAP-209ENST00000540469 LRIG2O94898 1065 aa12.79□□□□□ -0.36
SFSWAP-209ENST00000540469 IMPDH1P20839 514 aa12.79□□□□□ -0.36
SFSWAP-209ENST00000540469 HNRNPFP52597 415 aaKnown RBP12.79□□□□□ -0.36
SFSWAP-209ENST00000540469 ITKQ08881 620 aa12.79□□□□□ -0.36
SFSWAP-209ENST00000540469 FSCN1Q16658 493 aaKnown RBP12.79□□□□□ -0.36
SFSWAP-209ENST00000540469 ZNF789Q5FWF6 425 aa12.79□□□□□ -0.36
SFSWAP-209ENST00000540469 FKBP1CQ5VVH2 108 aa12.79□□□□□ -0.36
SFSWAP-209ENST00000540469 GTF2IRD2BQ6EKJ0 949 aa12.79□□□□□ -0.36
SFSWAP-209ENST00000540469 GTF2IRD2Q86UP8 949 aa12.79□□□□□ -0.36
SFSWAP-209ENST00000540469 SLC22A17Q8WUG5 538 aa12.79□□□□□ -0.36
SFSWAP-209ENST00000540469 HDAC2Q92769 488 aaKnown RBP12.79□□□□□ -0.36
SFSWAP-209ENST00000540469 TMEM125Q96AQ2 219 aa12.79□□□□□ -0.36
SFSWAP-209ENST00000540469 VAT1Q99536 393 aa12.79□□□□□ -0.36
SFSWAP-209ENST00000540469 MARCH7Q9H992 704 aa12.79□□□□□ -0.36
SFSWAP-209ENST00000540469 SHROOM3Q8TF72 1996 aa12.79□□□□□ -0.36
SFSWAP-209ENST00000540469 RAD51BO15315 384 aa12.79□□□□□ -0.36
SFSWAP-209ENST00000540469 SOAT2O75908 522 aa12.79□□□□□ -0.36
SFSWAP-209ENST00000540469 DNAJB1P25685 340 aa12.79□□□□□ -0.36
SFSWAP-209ENST00000540469 CHRNA4P43681 627 aa12.79□□□□□ -0.36
SFSWAP-209ENST00000540469 PYCR3Q53H96 274 aa12.79□□□□□ -0.36
SFSWAP-209ENST00000540469 C8orf82Q6P1X6 216 aaPredicted RBP12.79□□□□□ -0.36
SFSWAP-209ENST00000540469 HSFY1Q96LI6 401 aa12.79□□□□□ -0.36
SFSWAP-209ENST00000540469 PPM1MQ96MI6 270 aa12.79□□□□□ -0.36
SFSWAP-209ENST00000540469 ZNF641Q96N77 438 aaPredicted RBP12.79□□□□□ -0.36
SFSWAP-209ENST00000540469 MIR1-1HGQ9H1L0 117 aa12.79□□□□□ -0.36
SFSWAP-209ENST00000540469 AKIP1Q9NQ31 210 aa12.79□□□□□ -0.36
SFSWAP-209ENST00000540469 CRYL1Q9Y2S2 319 aa12.79□□□□□ -0.36
SFSWAP-209ENST00000540469 IFT52Q9Y366 437 aa12.79□□□□□ -0.36
SFSWAP-209ENST00000540469 TIMM22Q9Y584 194 aa12.79□□□□□ -0.36
SFSWAP-209ENST00000540469 LRRC14BA6NHZ5 514 aa12.78□□□□□ -0.36
SFSWAP-209ENST00000540469 TRIM64BA6NI03 449 aa12.78□□□□□ -0.36
SFSWAP-209ENST00000540469 CLDN5O00501 218 aa12.78□□□□□ -0.36
SFSWAP-209ENST00000540469 XPNPEP2O43895 674 aa12.78□□□□□ -0.36
SFSWAP-209ENST00000540469 UGT2B11O75310 529 aa12.78□□□□□ -0.36
SFSWAP-209ENST00000540469 ANXA9O76027 345 aa12.78□□□□□ -0.36
SFSWAP-209ENST00000540469 TGM1P22735 817 aa12.78□□□□□ -0.36
SFSWAP-209ENST00000540469 POLD2P49005 469 aa12.78□□□□□ -0.36
SFSWAP-209ENST00000540469 CLK1P49759 484 aaKnown RBP12.78□□□□□ -0.36
SFSWAP-209ENST00000540469 GADL1Q6ZQY3 521 aa12.78□□□□□ -0.36
SFSWAP-209ENST00000540469 MICU2Q8IYU8 434 aa12.78□□□□□ -0.36
SFSWAP-209ENST00000540469 ATPAF2Q8N5M1 289 aa12.78□□□□□ -0.36
SFSWAP-209ENST00000540469 BEST2Q8NFU1 509 aa12.78□□□□□ -0.36
SFSWAP-209ENST00000540469 ANKRD49Q8WVL7 239 aa12.78□□□□□ -0.36
SFSWAP-209ENST00000540469 OSBPL10Q9BXB5 764 aa12.78□□□□□ -0.36
SFSWAP-209ENST00000540469 C6orf62Q9GZU0 229 aaPredicted RBP12.78□□□□□ -0.36
SFSWAP-209ENST00000540469 SEMA4BQ9NPR2 832 aaPredicted RBP12.78□□□□□ -0.36
SFSWAP-209ENST00000540469 WDR70Q9NW82 654 aa12.78□□□□□ -0.36
SFSWAP-209ENST00000540469 PCDHGA3Q9Y5H0 932 aa12.78□□□□□ -0.36
SFSWAP-209ENST00000540469 TAF4O00268 1085 aa12.78□□□□□ -0.36
SFSWAP-209ENST00000540469 CCL22O00626 93 aa12.78□□□□□ -0.36
SFSWAP-209ENST00000540469 IDH3BO43837 385 aa12.78□□□□□ -0.36
SFSWAP-209ENST00000540469 CST1P01037 141 aa12.78□□□□□ -0.36
SFSWAP-209ENST00000540469 MYL3P08590 195 aa12.78□□□□□ -0.36
SFSWAP-209ENST00000540469 RABGGTBP53611 331 aa12.78□□□□□ -0.36
SFSWAP-209ENST00000540469 FOXA1P55317 472 aa12.78□□□□□ -0.36
SFSWAP-209ENST00000540469 OR4D2P58180 307 aa12.78□□□□□ -0.36
SFSWAP-209ENST00000540469 SH3BP2P78314 561 aa12.78□□□□□ -0.36
SFSWAP-209ENST00000540469 LAPTM5Q13571 262 aa12.78□□□□□ -0.36
SFSWAP-209ENST00000540469 TNFAIP1Q13829 316 aa12.78□□□□□ -0.36
SFSWAP-209ENST00000540469 ACAP2Q15057 778 aa12.78□□□□□ -0.36
SFSWAP-209ENST00000540469 ZNF678Q5SXM1 525 aa12.78□□□□□ -0.36
SFSWAP-209ENST00000540469 HECTD2Q5U5R9 776 aa12.78□□□□□ -0.36
SFSWAP-209ENST00000540469 HFE2Q6ZVN8 426 aa12.78□□□□□ -0.36
SFSWAP-209ENST00000540469 TFAP2DQ7Z6R9 452 aa12.78□□□□□ -0.36
SFSWAP-209ENST00000540469 P2RY8Q86VZ1 359 aa12.78□□□□□ -0.36
SFSWAP-209ENST00000540469 C18orf25Q96B23 403 aaPredicted RBP12.78□□□□□ -0.36
SFSWAP-209ENST00000540469 PABPC5Q96DU9 382 aaKnown RBP12.78□□□□□ -0.36
SFSWAP-209ENST00000540469 TP63Q9H3D4 680 aaPredicted RBP12.78□□□□□ -0.36
SFSWAP-209ENST00000540469 MUC13Q9H3R2 512 aa12.78□□□□□ -0.36
SFSWAP-209ENST00000540469 INTS7Q9NVH2 962 aaKnown RBP12.78□□□□□ -0.36
SFSWAP-209ENST00000540469 MTPAPQ9NVV4 582 aaKnown RBP eCLIP12.78□□□□□ -0.36
SFSWAP-209ENST00000540469 UBXN8O00124 270 aa12.78□□□□□ -0.36
SFSWAP-209ENST00000540469 SLC22A1O15245 554 aa12.78□□□□□ -0.36
SFSWAP-209ENST00000540469 DNAJB2P25686 324 aa12.78□□□□□ -0.36
SFSWAP-209ENST00000540469 OAZ1P54368 228 aa12.78□□□□□ -0.36
SFSWAP-209ENST00000540469 CD47Q08722 323 aa12.78□□□□□ -0.36
SFSWAP-209ENST00000540469 UGT3A2Q3SY77 523 aa12.78□□□□□ -0.36
SFSWAP-209ENST00000540469 HS3ST5Q8IZT8 346 aa12.78□□□□□ -0.36
SFSWAP-209ENST00000540469 DNERQ8NFT8 737 aa12.78□□□□□ -0.36
SFSWAP-209ENST00000540469 MCFD2Q8NI22 146 aa12.78□□□□□ -0.36
SFSWAP-209ENST00000540469 NCLNQ969V3 563 aa12.78□□□□□ -0.36
SFSWAP-209ENST00000540469 SLAMF8Q9P0V8 285 aa12.78□□□□□ -0.36
SFSWAP-209ENST00000540469 LIMD1Q9UGP4 676 aa12.78□□□□□ -0.36
SFSWAP-209ENST00000540469 LEF1Q9UJU2 399 aaPredicted RBP12.78□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 91.6 ms