RNA–Protein interactions for RNA: ENST00000540447.5

YBX3-208, Transcript of Y-box binding protein 3, humanhuman

TSL 2

Gene YBX3, Length 6,393 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-208ENST00000540447 SWSAP1Q6NVH7 229 aa8.73□□□□□ -1.01
YBX3-208ENST00000540447 TDRPQ86YL5 185 aa8.73□□□□□ -1.01
YBX3-208ENST00000540447 SAMD14Q8IZD0 417 aaPredicted RBP8.73□□□□□ -1.01
YBX3-208ENST00000540447 THAP6Q8TBB0 222 aa8.73□□□□□ -1.01
YBX3-208ENST00000540447 PTCD2Q8WV60 388 aaKnown RBP8.73□□□□□ -1.01
YBX3-208ENST00000540447 GTF2H4Q92759 462 aa8.73□□□□□ -1.01
YBX3-208ENST00000540447 ROPN1LQ96C74 230 aa8.73□□□□□ -1.01
YBX3-208ENST00000540447 PRICKLE1Q96MT3 831 aaPredicted RBP8.73□□□□□ -1.01
YBX3-208ENST00000540447 TJP2Q9UDY2 1190 aa8.73□□□□□ -1.01
YBX3-208ENST00000540447 CRLS1Q9UJA2 301 aa8.73□□□□□ -1.01
YBX3-208ENST00000540447 RHPN2P1A8MT19 583 aa8.72□□□□□ -1.01
YBX3-208ENST00000540447 NEDD8-MDP1E9PL57 170 aa8.72□□□□□ -1.01
YBX3-208ENST00000540447 CYP11A1P05108 521 aa8.72□□□□□ -1.01
YBX3-208ENST00000540447 PTPN1P18031 435 aaKnown RBP8.72□□□□□ -1.01
YBX3-208ENST00000540447 HPCAL1P37235 193 aa8.72□□□□□ -1.01
YBX3-208ENST00000540447 AKR1C8PQ5T2L2 129 aa8.72□□□□□ -1.01
YBX3-208ENST00000540447 IGFN1Q86VF2 1251 aa8.72□□□□□ -1.01
YBX3-208ENST00000540447 NAT16Q8N8M0 369 aa8.72□□□□□ -1.01
YBX3-208ENST00000540447 ANKRD53Q8N9V6 530 aa8.72□□□□□ -1.01
YBX3-208ENST00000540447 CCDC107Q8WV48 283 aa8.72□□□□□ -1.01
YBX3-208ENST00000540447 HEXDCQ8WVB3 486 aa8.72□□□□□ -1.01
YBX3-208ENST00000540447 GAB3Q8WWW8 586 aa8.72□□□□□ -1.01
YBX3-208ENST00000540447 ASB9Q96DX5 294 aa8.72□□□□□ -1.01
YBX3-208ENST00000540447 CERS2Q96G23 380 aa8.72□□□□□ -1.01
YBX3-208ENST00000540447 KCTD7Q96MP8 289 aa8.72□□□□□ -1.01
YBX3-208ENST00000540447 ZNF471Q9BX82 626 aaPredicted RBP8.72□□□□□ -1.01
YBX3-208ENST00000540447 SEZ6LQ9BYH1 1024 aa8.72□□□□□ -1.01
YBX3-208ENST00000540447 PCDHAC1Q9H158 963 aa8.72□□□□□ -1.01
YBX3-208ENST00000540447 KCNIP3Q9Y2W7 256 aa8.72□□□□□ -1.01
YBX3-208ENST00000540447 FAM205AQ6ZU69 1335 aa8.72□□□□□ -1.01
YBX3-208ENST00000540447 KDM6AO15550 1401 aaPredicted RBP8.72□□□□□ -1.01
YBX3-208ENST00000540447 PRDM15P57071 1507 aaPredicted RBP8.72□□□□□ -1.01
YBX3-208ENST00000540447 TRAV6A0A075B6T7 132 aa8.72□□□□□ -1.01
YBX3-208ENST00000540447 C5orf51A6NDU8 294 aa8.72□□□□□ -1.01
YBX3-208ENST00000540447 OR6C65A6NJZ3 312 aa8.72□□□□□ -1.01
YBX3-208ENST00000540447 NPIPA7E9PJI5 369 aa8.72□□□□□ -1.01
YBX3-208ENST00000540447 DYNC1LI2O43237 492 aaPredicted RBP8.72□□□□□ -1.01
YBX3-208ENST00000540447 RSL1D1O76021 490 aaKnown RBP8.72□□□□□ -1.01
YBX3-208ENST00000540447 LINC00032P0C843 101 aa8.72□□□□□ -1.01
YBX3-208ENST00000540447 NPIPA8P0DM63 369 aa8.72□□□□□ -1.01
YBX3-208ENST00000540447 HERVK_113P63132 956 aa8.72□□□□□ -1.01
YBX3-208ENST00000540447 FGL1Q08830 312 aa8.72□□□□□ -1.01
YBX3-208ENST00000540447 GRB14Q14449 540 aa8.72□□□□□ -1.01
YBX3-208ENST00000540447 QRICH1Q2TAL8 776 aa8.72□□□□□ -1.01
YBX3-208ENST00000540447 ANKRD54Q6NXT1 300 aa8.72□□□□□ -1.01
YBX3-208ENST00000540447 DAW1Q8N136 415 aa8.72□□□□□ -1.01
YBX3-208ENST00000540447 UFD1Q92890 307 aa8.72□□□□□ -1.01
YBX3-208ENST00000540447 TUBG2Q9NRH3 451 aa8.72□□□□□ -1.01
YBX3-208ENST00000540447 ANKEF1Q9NU02 776 aa8.72□□□□□ -1.01
YBX3-208ENST00000540447 CORO2BQ9UQ03 480 aa8.72□□□□□ -1.01
YBX3-208ENST00000540447 E9PI62 339 aa8.72□□□□□ -1.01
YBX3-208ENST00000540447 DENRO43583 198 aaKnown RBP8.72□□□□□ -1.01
YBX3-208ENST00000540447 IFNA10P01566 189 aa8.72□□□□□ -1.01
YBX3-208ENST00000540447 IFNA4P05014 189 aa8.72□□□□□ -1.01
YBX3-208ENST00000540447 TSPAN8P19075 237 aa8.72□□□□□ -1.01
YBX3-208ENST00000540447 GADD45AP24522 165 aa8.72□□□□□ -1.01
YBX3-208ENST00000540447 FGFBP1Q14512 234 aa8.72□□□□□ -1.01
YBX3-208ENST00000540447 ZMYND11Q15326 602 aa8.72□□□□□ -1.01
YBX3-208ENST00000540447 TRIM40Q6P9F5 258 aa8.72□□□□□ -1.01
YBX3-208ENST00000540447 UNC5AQ6ZN44 842 aa8.72□□□□□ -1.01
YBX3-208ENST00000540447 DSG4Q86SJ6 1040 aa8.72□□□□□ -1.01
YBX3-208ENST00000540447 SNIP1Q8TAD8 396 aaKnown RBP8.72□□□□□ -1.01
YBX3-208ENST00000540447 C9orf43Q8TAL5 461 aaPredicted RBP8.72□□□□□ -1.01
YBX3-208ENST00000540447 FAM167AQ96KS9 214 aa8.72□□□□□ -1.01
YBX3-208ENST00000540447 ZNF649Q9BS31 505 aa8.72□□□□□ -1.01
YBX3-208ENST00000540447 CEP41Q9BYV8 373 aa8.72□□□□□ -1.01
YBX3-208ENST00000540447 IL1RAPQ9NPH3 570 aa8.72□□□□□ -1.01
YBX3-208ENST00000540447 GNG8Q9UK08 70 aa8.72□□□□□ -1.01
YBX3-208ENST00000540447 RNF6Q9Y252 685 aa8.72□□□□□ -1.01
YBX3-208ENST00000540447 TADA2AO75478 443 aa8.72□□□□□ -1.01
YBX3-208ENST00000540447 FABP3P05413 133 aa8.72□□□□□ -1.01
YBX3-208ENST00000540447 ALDH7A1P49419 539 aaKnown RBP8.72□□□□□ -1.01
YBX3-208ENST00000540447 WDR4P57081 412 aaKnown RBP8.72□□□□□ -1.01
YBX3-208ENST00000540447 RBP5P82980 135 aa8.72□□□□□ -1.01
YBX3-208ENST00000540447 NFATC3Q12968 1075 aa8.72□□□□□ -1.01
YBX3-208ENST00000540447 DSG2Q14126 1118 aa8.72□□□□□ -1.01
YBX3-208ENST00000540447 ARHGEF7Q14155 803 aa8.72□□□□□ -1.01
YBX3-208ENST00000540447 GNA13Q14344 377 aa8.72□□□□□ -1.01
YBX3-208ENST00000540447 LSM12Q3MHD2 195 aaKnown RBP8.72□□□□□ -1.01
YBX3-208ENST00000540447 MIIPQ5JXC2 388 aa8.72□□□□□ -1.01
YBX3-208ENST00000540447 ADNP2Q6IQ32 1131 aa8.72□□□□□ -1.01
YBX3-208ENST00000540447 DNAJB7Q7Z6W7 309 aaPredicted RBP8.72□□□□□ -1.01
YBX3-208ENST00000540447 ITIH5Q86UX2 942 aa8.72□□□□□ -1.01
YBX3-208ENST00000540447 COMMD2Q86X83 199 aa8.72□□□□□ -1.01
YBX3-208ENST00000540447 FAM20CQ8IXL6 584 aa8.72□□□□□ -1.01
YBX3-208ENST00000540447 PTGR2Q8N8N7 351 aaPredicted RBP8.72□□□□□ -1.01
YBX3-208ENST00000540447 MFSD2AQ8NA29 543 aa8.72□□□□□ -1.01
YBX3-208ENST00000540447 WDR48Q8TAF3 677 aa8.72□□□□□ -1.01
YBX3-208ENST00000540447 BSNDQ8WZ55 320 aa8.72□□□□□ -1.01
YBX3-208ENST00000540447 NELL1Q92832 810 aa8.72□□□□□ -1.01
YBX3-208ENST00000540447 MAGEB10Q96LZ2 347 aaPredicted RBP8.72□□□□□ -1.01
YBX3-208ENST00000540447 SLITRK1Q96PX8 696 aa8.72□□□□□ -1.01
YBX3-208ENST00000540447 GON7Q9BXV9 100 aa8.72□□□□□ -1.01
YBX3-208ENST00000540447 NMRK2Q9NPI5 230 aa8.72□□□□□ -1.01
YBX3-208ENST00000540447 TAS2R14Q9NYV8 317 aa8.72□□□□□ -1.01
YBX3-208ENST00000540447 FAM50BQ9Y247 325 aa8.72□□□□□ -1.01
YBX3-208ENST00000540447 AQP12BA6NM10 295 aa8.72□□□□□ -1.01
YBX3-208ENST00000540447 FAM86B1E9PN63 330 aa8.72□□□□□ -1.01
YBX3-208ENST00000540447 HTRA2O43464 458 aaPredicted RBP8.72□□□□□ -1.01
YBX3-208ENST00000540447 TGM6O95932 706 aa8.72□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms