RNA–Protein interactions for RNA: ENST00000535236.5

SFSWAP-203, Transcript of splicing factor SWAP, humanhuman

TSL 1 (best)

Gene SFSWAP, Length 5,593 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-203ENST00000535236 DNASE1L2Q92874 299 aa18.1■□□□□ 0.49
SFSWAP-203ENST00000535236 RNPEPL1Q9HAU8 725 aa18.1■□□□□ 0.49
SFSWAP-203ENST00000535236 NEUROD4Q9HD90 331 aa18.1■□□□□ 0.49
SFSWAP-203ENST00000535236 RASSF1Q9NS23 344 aa18.1■□□□□ 0.49
SFSWAP-203ENST00000535236 LRRC72A6NJI9 287 aa18.09■□□□□ 0.49
SFSWAP-203ENST00000535236 EPHB6O15197 1021 aa18.09■□□□□ 0.49
SFSWAP-203ENST00000535236 GMFGO60234 142 aa18.09■□□□□ 0.49
SFSWAP-203ENST00000535236 CDH3P22223 829 aa18.09■□□□□ 0.49
SFSWAP-203ENST00000535236 MED22Q15528 200 aa18.09■□□□□ 0.49
SFSWAP-203ENST00000535236 TTC29Q8NA56 475 aaPredicted RBP18.09■□□□□ 0.49
SFSWAP-203ENST00000535236 SLC43A3Q8NBI5 491 aa18.09■□□□□ 0.49
SFSWAP-203ENST00000535236 CD99L2Q8TCZ2 262 aa18.09■□□□□ 0.49
SFSWAP-203ENST00000535236 SEC14L3Q9UDX4 400 aa18.09■□□□□ 0.49
SFSWAP-203ENST00000535236 NDRG2Q9UN36 371 aaKnown RBP18.09■□□□□ 0.49
SFSWAP-203ENST00000535236 PRKAB1Q9Y478 270 aa18.09■□□□□ 0.49
SFSWAP-203ENST00000535236 BBIP1A8MTZ0 92 aa18.09■□□□□ 0.49
SFSWAP-203ENST00000535236 CLDN4O14493 209 aa18.09■□□□□ 0.49
SFSWAP-203ENST00000535236 PGRMC2O15173 223 aa18.09■□□□□ 0.49
SFSWAP-203ENST00000535236 TCEA3O75764 348 aa18.09■□□□□ 0.49
SFSWAP-203ENST00000535236 CAPGP40121 348 aa18.09■□□□□ 0.49
SFSWAP-203ENST00000535236 ILF3Q12906 894 aaKnown RBP eCLIP18.09■□□□□ 0.492e-6■■■■□ 24
SFSWAP-203ENST00000535236 OTOP3Q7RTS5 596 aa18.09■□□□□ 0.49
SFSWAP-203ENST00000535236 OR2T12Q8NG77 320 aa18.09■□□□□ 0.49
SFSWAP-203ENST00000535236 PTCD2Q8WV60 388 aaKnown RBP18.09■□□□□ 0.49
SFSWAP-203ENST00000535236 KCNS3Q9BQ31 491 aa18.09■□□□□ 0.49
SFSWAP-203ENST00000535236 CCNB1IP1Q9NPC3 277 aa18.09■□□□□ 0.49
SFSWAP-203ENST00000535236 MCUBQ9NWR8 336 aa18.09■□□□□ 0.49
SFSWAP-203ENST00000535236 RHPN2P1A8MT19 583 aa18.09■□□□□ 0.49
SFSWAP-203ENST00000535236 ALOX15BO15296 676 aa18.09■□□□□ 0.49
SFSWAP-203ENST00000535236 LRIG2O94898 1065 aa18.09■□□□□ 0.49
SFSWAP-203ENST00000535236 LYPLA2O95372 231 aa18.09■□□□□ 0.49
SFSWAP-203ENST00000535236 GNPDA1P46926 289 aa18.09■□□□□ 0.49
SFSWAP-203ENST00000535236 LARS2Q15031 903 aaKnown RBP18.09■□□□□ 0.49
SFSWAP-203ENST00000535236 FAM91A1Q658Y4 838 aa18.09■□□□□ 0.49
SFSWAP-203ENST00000535236 UBR7Q8N806 425 aa18.09■□□□□ 0.49
SFSWAP-203ENST00000535236 IRGQQ8WZA9 623 aa18.09■□□□□ 0.49
SFSWAP-203ENST00000535236 CSPG4P5Q96PW8 444 aa18.09■□□□□ 0.49
SFSWAP-203ENST00000535236 LRTM1Q9HBL6 345 aa18.09■□□□□ 0.49
SFSWAP-203ENST00000535236 RCOR3Q9P2K3 495 aaPredicted RBP18.09■□□□□ 0.49
SFSWAP-203ENST00000535236 EGFL7Q9UHF1 273 aa18.09■□□□□ 0.49
SFSWAP-203ENST00000535236 MRPS17Q9Y2R5 130 aaKnown RBP18.09■□□□□ 0.49
SFSWAP-203ENST00000535236 NDST3O95803 873 aa18.09■□□□□ 0.49
SFSWAP-203ENST00000535236 CYP4B1P13584 511 aa18.09■□□□□ 0.49
SFSWAP-203ENST00000535236 CCR3P51677 355 aa18.09■□□□□ 0.49
SFSWAP-203ENST00000535236 DUPD1Q68J44 220 aa18.09■□□□□ 0.49
SFSWAP-203ENST00000535236 RFWD3Q6PCD5 774 aa18.09■□□□□ 0.49
SFSWAP-203ENST00000535236 AMIGO2Q86SJ2 522 aa18.09■□□□□ 0.49
SFSWAP-203ENST00000535236 MCRS1Q96EZ8 462 aa18.09■□□□□ 0.49
SFSWAP-203ENST00000535236 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP18.09■□□□□ 0.49
SFSWAP-203ENST00000535236 WTIPA6NIX2 430 aaPredicted RBP18.09■□□□□ 0.49
SFSWAP-203ENST00000535236 ARHGDIBP52566 201 aa18.09■□□□□ 0.49
SFSWAP-203ENST00000535236 DRG2P55039 364 aaKnown RBP18.09■□□□□ 0.49
SFSWAP-203ENST00000535236 PDK3Q15120 406 aa18.09■□□□□ 0.49
SFSWAP-203ENST00000535236 TEAD4Q15561 434 aa18.09■□□□□ 0.49
SFSWAP-203ENST00000535236 HSDL1Q3SXM5 330 aa18.09■□□□□ 0.49
SFSWAP-203ENST00000535236 ZNF730Q6ZMV8 503 aa18.09■□□□□ 0.49
SFSWAP-203ENST00000535236 SLAIN1Q8ND83 568 aa18.09■□□□□ 0.49
SFSWAP-203ENST00000535236 GPER1Q99527 375 aa18.09■□□□□ 0.49
SFSWAP-203ENST00000535236 CERS4Q9HA82 394 aa18.09■□□□□ 0.49
SFSWAP-203ENST00000535236 NMUR1Q9HB89 426 aa18.09■□□□□ 0.49
SFSWAP-203ENST00000535236 PNPOQ9NVS9 261 aa18.09■□□□□ 0.49
SFSWAP-203ENST00000535236 TREHO43280 583 aa18.08■□□□□ 0.49
SFSWAP-203ENST00000535236 CDK9P50750 372 aaKnown RBP18.08■□□□□ 0.49
SFSWAP-203ENST00000535236 SEC13P55735 322 aa18.08■□□□□ 0.49
SFSWAP-203ENST00000535236 NRG1Q02297 640 aaPredicted RBP18.08■□□□□ 0.49
SFSWAP-203ENST00000535236 LAPTM5Q13571 262 aa18.08■□□□□ 0.49
SFSWAP-203ENST00000535236 SLC9A6Q92581 669 aa18.08■□□□□ 0.49
SFSWAP-203ENST00000535236 DSN1Q9H410 356 aa18.08■□□□□ 0.49
SFSWAP-203ENST00000535236 ADGRE2Q9UHX3 823 aa18.08■□□□□ 0.49
SFSWAP-203ENST00000535236 ZNF222Q9UK12 451 aa18.08■□□□□ 0.49
SFSWAP-203ENST00000535236 BTBD19C9JJ37 291 aa18.08■□□□□ 0.49
SFSWAP-203ENST00000535236 SAGP10523 405 aaPredicted RBP18.08■□□□□ 0.49
SFSWAP-203ENST00000535236 HOXB6P17509 224 aaKnown RBP18.08■□□□□ 0.49
SFSWAP-203ENST00000535236 ASMTP46597 345 aa18.08■□□□□ 0.49
SFSWAP-203ENST00000535236 NOMO1Q15155 1222 aa18.08■□□□□ 0.49
SFSWAP-203ENST00000535236 C7orf61Q8IZ16 206 aa18.08■□□□□ 0.49
SFSWAP-203ENST00000535236 KCTD15Q96SI1 283 aaPredicted RBP18.08■□□□□ 0.49
SFSWAP-203ENST00000535236 TNKS2Q9H2K2 1166 aa18.08■□□□□ 0.49
SFSWAP-203ENST00000535236 CKLFQ9UBR5 152 aa18.08■□□□□ 0.49
SFSWAP-203ENST00000535236 G3V2T6 193 aa18.08■□□□□ 0.48
SFSWAP-203ENST00000535236 SLC7A2P52569 658 aa18.08■□□□□ 0.48
SFSWAP-203ENST00000535236 ADARP55265 1226 aaKnown RBP18.08■□□□□ 0.48
SFSWAP-203ENST00000535236 XYLT1Q86Y38 959 aa18.08■□□□□ 0.48
SFSWAP-203ENST00000535236 UNC5BQ8IZJ1 945 aa18.08■□□□□ 0.48
SFSWAP-203ENST00000535236 ADCY4Q8NFM4 1077 aa18.08■□□□□ 0.48
SFSWAP-203ENST00000535236 WRAP53Q9BUR4 548 aaKnown RBP18.08■□□□□ 0.48
SFSWAP-203ENST00000535236 IKZF2Q9UKS7 526 aa18.08■□□□□ 0.48
SFSWAP-203ENST00000535236 PRODHO43272 600 aa18.08■□□□□ 0.48
SFSWAP-203ENST00000535236 ARF5P84085 180 aa18.08■□□□□ 0.48
SFSWAP-203ENST00000535236 TRAP1Q12931 704 aaKnown RBP18.08■□□□□ 0.48
SFSWAP-203ENST00000535236 SNX20Q7Z614 316 aa18.08■□□□□ 0.48
SFSWAP-203ENST00000535236 ALYREFQ86V81 257 aaKnown RBP18.08■□□□□ 0.48
SFSWAP-203ENST00000535236 XAGE5Q8WWM1 108 aa18.08■□□□□ 0.48
SFSWAP-203ENST00000535236 HERVK_113Q902F9 699 aa18.08■□□□□ 0.48
SFSWAP-203ENST00000535236 COX4I2Q96KJ9 171 aa18.08■□□□□ 0.48
SFSWAP-203ENST00000535236 FAM83DQ9H4H8 585 aa18.08■□□□□ 0.48
SFSWAP-203ENST00000535236 A0A0J9YYE9 177 aa18.07■□□□□ 0.48
SFSWAP-203ENST00000535236 ANPEPP15144 967 aa18.07■□□□□ 0.48
SFSWAP-203ENST00000535236 C2orf80Q0P641 193 aa18.07■□□□□ 0.48
SFSWAP-203ENST00000535236 IL17AQ16552 155 aa18.07■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 66.7 ms