RNA–Protein interactions for RNA: ENST00000531118.5

CD44-232, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 877 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-232ENST00000531118 GPR83Q9NYM4 423 aa8.16□□□□□ -1.1
CD44-232ENST00000531118 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP8.16□□□□□ -1.1
CD44-232ENST00000531118 ARMCX3Q9UH62 379 aaPredicted RBP8.16□□□□□ -1.1
CD44-232ENST00000531118 ZNF232Q9UNY5 417 aa8.16□□□□□ -1.1
CD44-232ENST00000531118 SLC17A4Q9Y2C5 497 aa8.16□□□□□ -1.1
CD44-232ENST00000531118 NTNG1Q9Y2I2 539 aa8.16□□□□□ -1.1
CD44-232ENST00000531118 ACANP16112 2415 aa8.15□□□□□ -1.1
CD44-232ENST00000531118 TRBV23OR9-2A0A075B6M9 112 aa8.15□□□□□ -1.1
CD44-232ENST00000531118 SSU72P8A0A1W2PR75 194 aa8.15□□□□□ -1.1
CD44-232ENST00000531118 LILRA5A6NI73 299 aa8.15□□□□□ -1.1
CD44-232ENST00000531118 RASA4BC9J798 803 aa8.15□□□□□ -1.1
CD44-232ENST00000531118 RASA4O43374 803 aa8.15□□□□□ -1.1
CD44-232ENST00000531118 KDELR3O43731 214 aa8.15□□□□□ -1.1
CD44-232ENST00000531118 SPAG6O75602 509 aa8.15□□□□□ -1.1
CD44-232ENST00000531118 TIAF1O95411 115 aa8.15□□□□□ -1.1
CD44-232ENST00000531118 EML2O95834 649 aa8.15□□□□□ -1.1
CD44-232ENST00000531118 F9P00740 461 aa8.15□□□□□ -1.1
CD44-232ENST00000531118 VSIG8P0DPA2 414 aa8.15□□□□□ -1.1
CD44-232ENST00000531118 FGF5P12034 268 aa8.15□□□□□ -1.1
CD44-232ENST00000531118 PTPN4P29074 926 aa8.15□□□□□ -1.1
CD44-232ENST00000531118 POLD2P49005 469 aa8.15□□□□□ -1.1
CD44-232ENST00000531118 GRM3Q14832 879 aa8.15□□□□□ -1.1
CD44-232ENST00000531118 C8orf34Q49A92 452 aa8.15□□□□□ -1.1
CD44-232ENST00000531118 LARP7Q4G0J3 582 aaKnown RBP eCLIP8.15□□□□□ -1.1
CD44-232ENST00000531118 INO80DQ53TQ3 878 aaPredicted RBP8.15□□□□□ -1.1
CD44-232ENST00000531118 RWDD4Q6NW29 188 aaKnown RBP8.15□□□□□ -1.1
CD44-232ENST00000531118 BNIPLQ7Z465 357 aa8.15□□□□□ -1.1
CD44-232ENST00000531118 CDH24Q86UP0 819 aa8.15□□□□□ -1.1
CD44-232ENST00000531118 FAM131BQ86XD5 332 aa8.15□□□□□ -1.1
CD44-232ENST00000531118 NXPE1Q8N323 547 aa8.15□□□□□ -1.1
CD44-232ENST00000531118 WDTC1Q8N5D0 677 aa8.15□□□□□ -1.1
CD44-232ENST00000531118 ADAMTS17Q8TE56 1095 aa8.15□□□□□ -1.1
CD44-232ENST00000531118 FNIP1Q8TF40 1166 aa8.15□□□□□ -1.1
CD44-232ENST00000531118 INPP5DQ92835 1189 aa8.15□□□□□ -1.1
CD44-232ENST00000531118 ZNF775Q96BV0 537 aaPredicted RBP8.15□□□□□ -1.1
CD44-232ENST00000531118 COQ10AQ96MF6 247 aa8.15□□□□□ -1.1
CD44-232ENST00000531118 SMAD5Q99717 465 aaKnown RBP8.15□□□□□ -1.1
CD44-232ENST00000531118 TSG101Q99816 390 aa8.15□□□□□ -1.1
CD44-232ENST00000531118 GTPBP4Q9BZE4 634 aaKnown RBP8.15□□□□□ -1.1
CD44-232ENST00000531118 KLC2Q9H0B6 622 aa8.15□□□□□ -1.1
CD44-232ENST00000531118 EPB41L1Q9H4G0 881 aa8.15□□□□□ -1.1
CD44-232ENST00000531118 SYNCQ9H7C4 482 aa8.15□□□□□ -1.1
CD44-232ENST00000531118 SARS2Q9NP81 518 aaKnown RBP8.15□□□□□ -1.1
CD44-232ENST00000531118 PPP4R2Q9NY27 417 aa8.15□□□□□ -1.1
CD44-232ENST00000531118 USP25Q9UHP3 1055 aa8.15□□□□□ -1.1
CD44-232ENST00000531118 PADI1Q9ULC6 663 aa8.15□□□□□ -1.1
CD44-232ENST00000531118 SPTBP11277 2137 aa8.15□□□□□ -1.11
CD44-232ENST00000531118 NIPBLQ6KC79 2804 aaeCLIP8.15□□□□□ -1.11
CD44-232ENST00000531118 C9P02748 559 aa8.14□□□□□ -1.11
CD44-232ENST00000531118 PLEKP08567 350 aaPredicted RBP8.14□□□□□ -1.11
CD44-232ENST00000531118 SNRPB2P08579 225 aaKnown RBP8.14□□□□□ -1.11
CD44-232ENST00000531118 COX6B1P14854 86 aa8.14□□□□□ -1.11
CD44-232ENST00000531118 HNRNPH3P31942 346 aaKnown RBP8.14□□□□□ -1.11
CD44-232ENST00000531118 FLT3P36888 993 aa8.14□□□□□ -1.11
CD44-232ENST00000531118 SEPHS1P49903 392 aa8.14□□□□□ -1.11
CD44-232ENST00000531118 NRG1Q02297 640 aaPredicted RBP8.14□□□□□ -1.11
CD44-232ENST00000531118 RAPSNQ13702 412 aa8.14□□□□□ -1.11
CD44-232ENST00000531118 IL11RAQ14626 422 aa8.14□□□□□ -1.11
CD44-232ENST00000531118 ACOX1Q15067 660 aa8.14□□□□□ -1.11
CD44-232ENST00000531118 CNGA3Q16281 694 aa8.14□□□□□ -1.11
CD44-232ENST00000531118 SLC25A52Q3SY17 297 aa8.14□□□□□ -1.11
CD44-232ENST00000531118 PLEKHN1Q494U1 663 aaPredicted RBP8.14□□□□□ -1.11
CD44-232ENST00000531118 MIIPQ5JXC2 388 aa8.14□□□□□ -1.11
CD44-232ENST00000531118 VWA5B1Q5TIE3 1220 aa8.14□□□□□ -1.11
CD44-232ENST00000531118 AFMIDQ63HM1 303 aa8.14□□□□□ -1.11
CD44-232ENST00000531118 RAET1GQ6H3X3 334 aa8.14□□□□□ -1.11
CD44-232ENST00000531118 TRNP1Q6NT89 227 aa8.14□□□□□ -1.11
CD44-232ENST00000531118 ZNF517Q6ZMY9 492 aaPredicted RBP8.14□□□□□ -1.11
CD44-232ENST00000531118 RIPOR1Q6ZS17 1223 aa8.14□□□□□ -1.11
CD44-232ENST00000531118 PPP1R3BQ86XI6 285 aa8.14□□□□□ -1.11
CD44-232ENST00000531118 CAMK1DQ8IU85 385 aa8.14□□□□□ -1.11
CD44-232ENST00000531118 PLXDC1Q8IUK5 500 aa8.14□□□□□ -1.11
CD44-232ENST00000531118 TBC1D31Q96DN5 1066 aa8.14□□□□□ -1.11
CD44-232ENST00000531118 C9orf72Q96LT7 481 aa8.14□□□□□ -1.11
CD44-232ENST00000531118 ZNF641Q96N77 438 aaPredicted RBP8.14□□□□□ -1.11
CD44-232ENST00000531118 TUBGCP5Q96RT8 1024 aa8.14□□□□□ -1.11
CD44-232ENST00000531118 BARD1Q99728 777 aaKnown RBP8.14□□□□□ -1.11
CD44-232ENST00000531118 TBC1D10AQ9BXI6 508 aa8.14□□□□□ -1.11
CD44-232ENST00000531118 ILKAPQ9H0C8 392 aaPredicted RBP8.14□□□□□ -1.11
CD44-232ENST00000531118 NOL6Q9H6R4 1146 aaKnown RBP8.14□□□□□ -1.11
CD44-232ENST00000531118 COPG2Q9UBF2 871 aa8.14□□□□□ -1.11
CD44-232ENST00000531118 B4GALT6Q9UBX8 382 aa8.14□□□□□ -1.11
CD44-232ENST00000531118 OSGIN2Q9Y236 505 aa8.14□□□□□ -1.11
CD44-232ENST00000531118 B3GNT3Q9Y2A9 372 aa8.14□□□□□ -1.11
CD44-232ENST00000531118 KLF2Q9Y5W3 355 aaPredicted RBP8.14□□□□□ -1.11
CD44-232ENST00000531118 SEC16AO15027 2179 aa8.14□□□□□ -1.11
CD44-232ENST00000531118 DOCK10Q96BY6 2186 aa8.13□□□□□ -1.11
CD44-232ENST00000531118 A0A1B0GVL5 298 aa8.13□□□□□ -1.11
CD44-232ENST00000531118 TRIM49BA6NDI0 452 aa8.13□□□□□ -1.11
CD44-232ENST00000531118 GOLGA6CA6NDK9 693 aa8.13□□□□□ -1.11
CD44-232ENST00000531118 GOLGA6BA6NDN3 693 aa8.13□□□□□ -1.11
CD44-232ENST00000531118 A6NL46 340 aa8.13□□□□□ -1.11
CD44-232ENST00000531118 BECN2A8MW95 431 aa8.13□□□□□ -1.11
CD44-232ENST00000531118 ZNF185O15231 689 aa8.13□□□□□ -1.11
CD44-232ENST00000531118 P4HA2O15460 535 aa8.13□□□□□ -1.11
CD44-232ENST00000531118 TMEM63AO94886 807 aa8.13□□□□□ -1.11
CD44-232ENST00000531118 LRIG2O94898 1065 aa8.13□□□□□ -1.11
CD44-232ENST00000531118 GOLGA6DP0CG33 693 aa8.13□□□□□ -1.11
CD44-232ENST00000531118 LPOP22079 712 aaPredicted RBP8.13□□□□□ -1.11
CD44-232ENST00000531118 TEAD1P28347 426 aa8.13□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms