RNA–Protein interactions for RNA: ENST00000528142.5

VPS28-209, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 1,821 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-209ENST00000528142 CA5AP35218 305 aa20.58■□□□□ 0.89
VPS28-209ENST00000528142 RASSF2P50749 326 aa20.58■□□□□ 0.89
VPS28-209ENST00000528142 ALDH18A1P54886 795 aaKnown RBP20.58■□□□□ 0.89
VPS28-209ENST00000528142 NFKB2Q00653 900 aa20.58■□□□□ 0.89
VPS28-209ENST00000528142 RAD51Q06609 339 aa20.58■□□□□ 0.89
VPS28-209ENST00000528142 OR4D1Q15615 310 aa20.58■□□□□ 0.89
VPS28-209ENST00000528142 RAB30Q15771 203 aa20.58■□□□□ 0.89
VPS28-209ENST00000528142 FAM78AQ5JUQ0 283 aa20.58■□□□□ 0.89
VPS28-209ENST00000528142 TRIM68Q6AZZ1 485 aa20.58■□□□□ 0.89
VPS28-209ENST00000528142 TDHQ8IZJ6 230 aa20.58■□□□□ 0.89
VPS28-209ENST00000528142 AGR3Q8TD06 166 aa20.58■□□□□ 0.89
VPS28-209ENST00000528142 SORCS1Q8WY21 1168 aa20.58■□□□□ 0.89
VPS28-209ENST00000528142 KCNJ9Q92806 393 aa20.58■□□□□ 0.89
VPS28-209ENST00000528142 SLC30A3Q99726 388 aa20.58■□□□□ 0.89
VPS28-209ENST00000528142 APPL1Q9UKG1 709 aa20.58■□□□□ 0.89
VPS28-209ENST00000528142 TRBV5-4A0A0C4DH59 114 aa20.57■□□□□ 0.88
VPS28-209ENST00000528142 HDAC3O15379 428 aa20.57■□□□□ 0.88
VPS28-209ENST00000528142 DIAPH2O60879 1101 aa20.57■□□□□ 0.88
VPS28-209ENST00000528142 NIPSNAP2O75323 286 aa20.57■□□□□ 0.88
VPS28-209ENST00000528142 VPS26AO75436 327 aa20.57■□□□□ 0.88
VPS28-209ENST00000528142 UGT2B4P06133 528 aa20.57■□□□□ 0.88
VPS28-209ENST00000528142 KRT16P08779 473 aa20.57■□□□□ 0.88
VPS28-209ENST00000528142 ADH5P11766 374 aa20.57■□□□□ 0.88
VPS28-209ENST00000528142 IMPDH1P20839 514 aa20.57■□□□□ 0.88
VPS28-209ENST00000528142 CALB2P22676 271 aa20.57■□□□□ 0.88
VPS28-209ENST00000528142 SP100P23497 879 aaPredicted RBP20.57■□□□□ 0.88
VPS28-209ENST00000528142 PTPN4P29074 926 aa20.57■□□□□ 0.88
VPS28-209ENST00000528142 VASPP50552 380 aaPredicted RBP20.57■□□□□ 0.88
VPS28-209ENST00000528142 SLC9B1Q4ZJI4 515 aa20.57■□□□□ 0.88
VPS28-209ENST00000528142 TCEAL5Q5H9L2 206 aa20.57■□□□□ 0.88
VPS28-209ENST00000528142 CFAP157Q5JU67 520 aa20.57■□□□□ 0.88
VPS28-209ENST00000528142 CYB5D1Q6P9G0 228 aa20.57■□□□□ 0.88
VPS28-209ENST00000528142 SNX20Q7Z614 316 aa20.57■□□□□ 0.88
VPS28-209ENST00000528142 KDM1BQ8NB78 822 aa20.57■□□□□ 0.88
VPS28-209ENST00000528142 CYB5D2Q8WUJ1 264 aa20.57■□□□□ 0.88
VPS28-209ENST00000528142 UTP4Q969X6 686 aaKnown RBP20.57■□□□□ 0.88
VPS28-209ENST00000528142 TBRG4Q969Z0 631 aaKnown RBP eCLIP20.57■□□□□ 0.88
VPS28-209ENST00000528142 KIAA1191Q96A73 305 aa20.57■□□□□ 0.88
VPS28-209ENST00000528142 L3HYPDHQ96EM0 354 aa20.57■□□□□ 0.88
VPS28-209ENST00000528142 ASIC4Q96FT7 647 aa20.57■□□□□ 0.88
VPS28-209ENST00000528142 ATOH8Q96SQ7 321 aa20.57■□□□□ 0.88
VPS28-209ENST00000528142 A8MX80 341 aa20.57■□□□□ 0.88
VPS28-209ENST00000528142 MTHFD2P13995 350 aa20.57■□□□□ 0.88
VPS28-209ENST00000528142 PTPN5P54829 565 aa20.57■□□□□ 0.88
VPS28-209ENST00000528142 NFATC2Q13469 925 aa20.57■□□□□ 0.88
VPS28-209ENST00000528142 USP45Q70EL2 814 aa20.57■□□□□ 0.88
VPS28-209ENST00000528142 SERPINA9Q86WD7 417 aa20.57■□□□□ 0.88
VPS28-209ENST00000528142 GIMAP7Q8NHV1 300 aa20.57■□□□□ 0.88
VPS28-209ENST00000528142 CD200R1Q8TD46 325 aa20.57■□□□□ 0.88
VPS28-209ENST00000528142 STON2Q8WXE9 905 aa20.57■□□□□ 0.88
VPS28-209ENST00000528142 PHF21BQ96EK2 531 aa20.57■□□□□ 0.88
VPS28-209ENST00000528142 ASB16Q96NS5 453 aa20.57■□□□□ 0.88
VPS28-209ENST00000528142 SHCBP1LQ9BZQ2 653 aa20.57■□□□□ 0.88
VPS28-209ENST00000528142 SLC28A3Q9HAS3 691 aa20.57■□□□□ 0.88
VPS28-209ENST00000528142 IKZF3Q9UKT9 509 aa20.57■□□□□ 0.88
VPS28-209ENST00000528142 A0A1W2PQ67 120 aa20.56■□□□□ 0.88
VPS28-209ENST00000528142 SLCO1B7G3V0H7 640 aa20.56■□□□□ 0.88
VPS28-209ENST00000528142 PRMT5O14744 637 aaPredicted RBP20.56■□□□□ 0.88
VPS28-209ENST00000528142 TSPAN12O95859 305 aa20.56■□□□□ 0.88
VPS28-209ENST00000528142 LHCGRP22888 699 aa20.56■□□□□ 0.88
VPS28-209ENST00000528142 SPAM1P38567 509 aa20.56■□□□□ 0.88
VPS28-209ENST00000528142 DGKGP49619 791 aa20.56■□□□□ 0.88
VPS28-209ENST00000528142 ATP6V0D1P61421 351 aa20.56■□□□□ 0.88
VPS28-209ENST00000528142 SEL1L3Q68CR1 1132 aa20.56■□□□□ 0.88
VPS28-209ENST00000528142 GRAMD4Q6IC98 578 aa20.56■□□□□ 0.88
VPS28-209ENST00000528142 GDPD4Q6W3E5 623 aa20.56■□□□□ 0.88
VPS28-209ENST00000528142 C12orf40Q86WS4 652 aa20.56■□□□□ 0.88
VPS28-209ENST00000528142 NKAPQ8N5F7 415 aaKnown RBP20.56■□□□□ 0.88
VPS28-209ENST00000528142 SIDT2Q8NBJ9 832 aaKnown RBP20.56■□□□□ 0.88
VPS28-209ENST00000528142 ASB8Q9H765 288 aa20.56■□□□□ 0.88
VPS28-209ENST00000528142 BRD9Q9H8M2 597 aa20.56■□□□□ 0.88
VPS28-209ENST00000528142 VTI1BQ9UEU0 232 aa20.56■□□□□ 0.88
VPS28-209ENST00000528142 PCDHB1Q9Y5F3 818 aa20.56■□□□□ 0.88
VPS28-209ENST00000528142 GLYATL1P3A0A0U1RQE8 302 aa20.55■□□□□ 0.88
VPS28-209ENST00000528142 TTC34A8MYJ7 566 aa20.55■□□□□ 0.88
VPS28-209ENST00000528142 MGRN1O60291 552 aa20.55■□□□□ 0.88
VPS28-209ENST00000528142 ADH1CP00326 375 aa20.55■□□□□ 0.88
VPS28-209ENST00000528142 TPBGLP0DKB5 382 aa20.55■□□□□ 0.88
VPS28-209ENST00000528142 ITGALP20701 1170 aa20.55■□□□□ 0.88
VPS28-209ENST00000528142 RPS3P23396 243 aaKnown RBP eCLIP20.55■□□□□ 0.885e-7■■□□□ 13
VPS28-209ENST00000528142 FSHRP23945 695 aa20.55■□□□□ 0.88
VPS28-209ENST00000528142 SEMG2Q02383 582 aa20.55■□□□□ 0.88
VPS28-209ENST00000528142 PTSQ03393 145 aa20.55■□□□□ 0.88
VPS28-209ENST00000528142 GALNT1Q10472 559 aaPredicted RBP20.55■□□□□ 0.88
VPS28-209ENST00000528142 UBAP2LQ14157 1087 aaKnown RBP20.55■□□□□ 0.88
VPS28-209ENST00000528142 TBCCQ15814 346 aa20.55■□□□□ 0.88
VPS28-209ENST00000528142 CHRNA6Q15825 494 aa20.55■□□□□ 0.88
VPS28-209ENST00000528142 ZNF678Q5SXM1 525 aa20.55■□□□□ 0.88
VPS28-209ENST00000528142 LRRC66Q68CR7 880 aa20.55■□□□□ 0.88
VPS28-209ENST00000528142 FRMD7Q6ZUT3 714 aa20.55■□□□□ 0.88
VPS28-209ENST00000528142 GPR26Q8NDV2 337 aa20.55■□□□□ 0.88
VPS28-209ENST00000528142 BPIFB1Q8TDL5 484 aa20.55■□□□□ 0.88
VPS28-209ENST00000528142 FGF13Q92913 245 aa20.55■□□□□ 0.88
VPS28-209ENST00000528142 SMARCD2Q92925 531 aa20.55■□□□□ 0.88
VPS28-209ENST00000528142 CCDC97Q96F63 343 aaPredicted RBP20.55■□□□□ 0.88
VPS28-209ENST00000528142 HEPHQ9BQS7 1158 aa20.55■□□□□ 0.88
VPS28-209ENST00000528142 GSTO2Q9H4Y5 243 aa20.55■□□□□ 0.88
VPS28-209ENST00000528142 SLC27A6Q9Y2P4 619 aa20.55■□□□□ 0.88
VPS28-209ENST00000528142 WASF2Q9Y6W5 498 aa20.55■□□□□ 0.88
VPS28-209ENST00000528142 PDE4DIPQ5VU43 2346 aa20.55■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms