RNA–Protein interactions for RNA: ENST00000527889.5

CD44-226, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 543 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-226ENST00000527889 BYSLQ13895 437 aaKnown RBP4.23□□□□□ -1.73
CD44-226ENST00000527889 DPYSQ14117 519 aa4.23□□□□□ -1.73
CD44-226ENST00000527889 TFDP2Q14188 446 aa4.23□□□□□ -1.73
CD44-226ENST00000527889 FGL2Q14314 439 aa4.23□□□□□ -1.73
CD44-226ENST00000527889 NOMO1Q15155 1222 aa4.23□□□□□ -1.73
CD44-226ENST00000527889 OASLQ15646 514 aaKnown RBP4.23□□□□□ -1.73
CD44-226ENST00000527889 TAF12Q16514 161 aa4.23□□□□□ -1.73
CD44-226ENST00000527889 CCNG2Q16589 344 aa4.23□□□□□ -1.73
CD44-226ENST00000527889 CCDC157Q569K6 752 aa4.23□□□□□ -1.73
CD44-226ENST00000527889 C10orf120Q5SQS8 335 aa4.23□□□□□ -1.73
CD44-226ENST00000527889 AGAP9Q5VTM2 703 aa4.23□□□□□ -1.73
CD44-226ENST00000527889 TPGS2Q68CL5 300 aa4.23□□□□□ -1.73
CD44-226ENST00000527889 NCBP2-AS2Q69YL0 99 aa4.23□□□□□ -1.73
CD44-226ENST00000527889 SLC9A4Q6AI14 798 aa4.23□□□□□ -1.73
CD44-226ENST00000527889 BICRALQ6AI39 1079 aa4.23□□□□□ -1.73
CD44-226ENST00000527889 HIBCHQ6NVY1 386 aaPredicted RBP4.23□□□□□ -1.73
CD44-226ENST00000527889 MSANTD2Q6P1R3 559 aa4.23□□□□□ -1.73
CD44-226ENST00000527889 DRICH1Q6PGQ1 229 aaPredicted RBP4.23□□□□□ -1.73
CD44-226ENST00000527889 ZDHHC24Q6UX98 284 aa4.23□□□□□ -1.73
CD44-226ENST00000527889 GSTA5Q7RTV2 222 aa4.23□□□□□ -1.73
CD44-226ENST00000527889 TTC7BQ86TV6 843 aa4.23□□□□□ -1.73
CD44-226ENST00000527889 MON1AQ86VX9 555 aa4.23□□□□□ -1.73
CD44-226ENST00000527889 MIB1Q86YT6 1006 aa4.23□□□□□ -1.73
CD44-226ENST00000527889 MAP7D3Q8IWC1 876 aa4.23□□□□□ -1.73
CD44-226ENST00000527889 UNC45BQ8IWX7 931 aa4.23□□□□□ -1.73
CD44-226ENST00000527889 TP53INP2Q8IXH6 220 aa4.23□□□□□ -1.73
CD44-226ENST00000527889 ALLCQ8N6M5 410 aa4.23□□□□□ -1.73
CD44-226ENST00000527889 RNF152Q8N8N0 203 aa4.23□□□□□ -1.73
CD44-226ENST00000527889 CDYL2Q8N8U2 506 aa4.23□□□□□ -1.73
CD44-226ENST00000527889 OR10H5Q8NGA6 315 aa4.23□□□□□ -1.73
CD44-226ENST00000527889 GSDMBQ8TAX9 411 aa4.23□□□□□ -1.73
CD44-226ENST00000527889 SLC35B2Q8TB61 432 aa4.23□□□□□ -1.73
CD44-226ENST00000527889 FAM71BQ8TC56 605 aa4.23□□□□□ -1.73
CD44-226ENST00000527889 GRK7Q8WTQ7 553 aa4.23□□□□□ -1.73
CD44-226ENST00000527889 RNF139Q8WU17 664 aa4.23□□□□□ -1.73
CD44-226ENST00000527889 C2orf15Q8WU43 125 aaKnown RBP4.23□□□□□ -1.73
CD44-226ENST00000527889 GIMAP1Q8WWP7 306 aa4.23□□□□□ -1.73
CD44-226ENST00000527889 NTAN1Q96AB6 310 aa4.23□□□□□ -1.73
CD44-226ENST00000527889 PGAP3Q96FM1 320 aaPredicted RBP4.23□□□□□ -1.73
CD44-226ENST00000527889 TMEM41AQ96HV5 264 aa4.23□□□□□ -1.73
CD44-226ENST00000527889 SPATA17Q96L03 361 aa4.23□□□□□ -1.73
CD44-226ENST00000527889 TBATAQ96M53 351 aa4.23□□□□□ -1.73
CD44-226ENST00000527889 RUNDC3BQ96NL0 473 aa4.23□□□□□ -1.73
CD44-226ENST00000527889 CSPG4P5Q96PW8 444 aa4.23□□□□□ -1.73
CD44-226ENST00000527889 DMRTA2Q96SC8 542 aa4.23□□□□□ -1.73
CD44-226ENST00000527889 RAD9AQ99638 391 aa4.23□□□□□ -1.73
CD44-226ENST00000527889 ZNF670Q9BS34 389 aa4.23□□□□□ -1.73
CD44-226ENST00000527889 C17orf80Q9BSJ5 609 aa4.23□□□□□ -1.73
CD44-226ENST00000527889 TTLL2Q9BWV7 592 aa4.23□□□□□ -1.73
CD44-226ENST00000527889 FUT8Q9BYC5 575 aa4.23□□□□□ -1.73
CD44-226ENST00000527889 UNKQ9C0B0 810 aaKnown RBP4.23□□□□□ -1.73
CD44-226ENST00000527889 IQCGQ9H095 443 aaKnown RBP4.23□□□□□ -1.73
CD44-226ENST00000527889 TKTL2Q9H0I9 626 aa4.23□□□□□ -1.73
CD44-226ENST00000527889 SIK2Q9H0K1 926 aa4.23□□□□□ -1.73
CD44-226ENST00000527889 RAB17Q9H0T7 212 aa4.23□□□□□ -1.73
CD44-226ENST00000527889 TTYH1Q9H313 450 aaPredicted RBP4.23□□□□□ -1.73
CD44-226ENST00000527889 SMOC2Q9H3U7 446 aa4.23□□□□□ -1.73
CD44-226ENST00000527889 WDCPQ9H6R7 721 aa4.23□□□□□ -1.73
CD44-226ENST00000527889 CYP4F11Q9HBI6 524 aa4.23□□□□□ -1.73
CD44-226ENST00000527889 ZNF334Q9HCZ1 680 aaPredicted RBP4.23□□□□□ -1.73
CD44-226ENST00000527889 ENTPD7Q9NQZ7 604 aa4.23□□□□□ -1.73
CD44-226ENST00000527889 TLR8Q9NR97 1041 aaKnown RBP4.23□□□□□ -1.73
CD44-226ENST00000527889 MRPL17Q9NRX2 175 aaKnown RBP4.23□□□□□ -1.73
CD44-226ENST00000527889 FAM114A2Q9NRY5 505 aa4.23□□□□□ -1.73
CD44-226ENST00000527889 HOMER3Q9NSC5 361 aa4.23□□□□□ -1.73
CD44-226ENST00000527889 ABCC13Q9NSE7 274 aa4.23□□□□□ -1.73
CD44-226ENST00000527889 DNAJC17Q9NVM6 304 aaKnown RBP4.23□□□□□ -1.73
CD44-226ENST00000527889 MTPAPQ9NVV4 582 aaKnown RBP eCLIP4.23□□□□□ -1.73
CD44-226ENST00000527889 RRN3Q9NYV6 651 aa4.23□□□□□ -1.73
CD44-226ENST00000527889 GRHL1Q9NZI5 618 aa4.23□□□□□ -1.73
CD44-226ENST00000527889 LMCD1Q9NZU5 365 aa4.23□□□□□ -1.73
CD44-226ENST00000527889 SLAMF8Q9P0V8 285 aa4.23□□□□□ -1.73
CD44-226ENST00000527889 THEGQ9P2T0 379 aa4.23□□□□□ -1.73
CD44-226ENST00000527889 NIPSNAP3AQ9UFN0 247 aaPredicted RBP4.23□□□□□ -1.73
CD44-226ENST00000527889 AFF4Q9UHB7 1163 aaKnown RBP4.23□□□□□ -1.73
CD44-226ENST00000527889 FBXW11Q9UKB1 542 aa4.23□□□□□ -1.73
CD44-226ENST00000527889 TTLL3Q9Y4R7 772 aa4.23□□□□□ -1.73
CD44-226ENST00000527889 YIPF1Q9Y548 306 aa4.23□□□□□ -1.73
CD44-226ENST00000527889 INSL6Q9Y581 213 aa4.23□□□□□ -1.73
CD44-226ENST00000527889 PCDHGB2Q9Y5G2 931 aa4.23□□□□□ -1.73
CD44-226ENST00000527889 HEY1Q9Y5J3 304 aa4.23□□□□□ -1.73
CD44-226ENST00000527889 PTPN13Q12923 2485 aa4.23□□□□□ -1.73
CD44-226ENST00000527889 NUP214P35658 2090 aaPredicted RBP4.23□□□□□ -1.73
CD44-226ENST00000527889 CCDC88CQ9P219 2028 aa4.22□□□□□ -1.73
CD44-226ENST00000527889 EML5Q05BV3 1969 aa4.22□□□□□ -1.73
CD44-226ENST00000527889 FAM92AA1XBS5 289 aa4.22□□□□□ -1.73
CD44-226ENST00000527889 LINC01553A4QN01 128 aa4.22□□□□□ -1.73
CD44-226ENST00000527889 C2orf78A6NCI8 922 aa4.22□□□□□ -1.73
CD44-226ENST00000527889 POM121BA6NF01 834 aa4.22□□□□□ -1.73
CD44-226ENST00000527889 HIDE1A8MVS5 230 aa4.22□□□□□ -1.73
CD44-226ENST00000527889 ZNF487B1APH4 448 aa4.22□□□□□ -1.73
CD44-226ENST00000527889 M0R3H8 397 aa4.22□□□□□ -1.73
CD44-226ENST00000527889 DCLK1O15075 740 aa4.22□□□□□ -1.73
CD44-226ENST00000527889 GRM6O15303 877 aa4.22□□□□□ -1.73
CD44-226ENST00000527889 KCNN4O15554 427 aa4.22□□□□□ -1.73
CD44-226ENST00000527889 SGTAO43765 313 aa4.22□□□□□ -1.73
CD44-226ENST00000527889 SEC24DO94855 1032 aaPredicted RBP4.22□□□□□ -1.73
CD44-226ENST00000527889 F9P00740 461 aa4.22□□□□□ -1.73
CD44-226ENST00000527889 TUBBP07437 444 aa4.22□□□□□ -1.73
CD44-226ENST00000527889 CA3P07451 260 aa4.22□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms