RNA–Protein interactions for RNA: ENST00000526044.5

USP48-211, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 3

Gene USP48, Length 549 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-211ENST00000526044 ALFQ53S48 1182 aa4.67□□□□□ -1.66
USP48-211ENST00000526044 RNASE12Q5GAN4 147 aaKnown RBP4.67□□□□□ -1.66
USP48-211ENST00000526044 ZNF667Q5HYK9 610 aa4.67□□□□□ -1.66
USP48-211ENST00000526044 PRAMEF17Q5VTA0 474 aa4.67□□□□□ -1.66
USP48-211ENST00000526044 KIAA1614Q5VZ46 1190 aa4.67□□□□□ -1.66
USP48-211ENST00000526044 KIRREL2Q6UWL6 708 aa4.67□□□□□ -1.66
USP48-211ENST00000526044 CLEC9AQ6UXN8 241 aa4.67□□□□□ -1.66
USP48-211ENST00000526044 DSTYKQ6XUX3 929 aa4.67□□□□□ -1.66
USP48-211ENST00000526044 LRRC43Q8N309 656 aa4.67□□□□□ -1.66
USP48-211ENST00000526044 LRRC52Q8N7C0 313 aa4.67□□□□□ -1.66
USP48-211ENST00000526044 NEK11Q8NG66 645 aa4.67□□□□□ -1.66
USP48-211ENST00000526044 LMO3Q8TAP4 145 aa4.67□□□□□ -1.66
USP48-211ENST00000526044 TAF4BQ92750 862 aa4.67□□□□□ -1.66
USP48-211ENST00000526044 SEMA4DQ92854 862 aa4.67□□□□□ -1.66
USP48-211ENST00000526044 LRRC46Q96FV0 321 aa4.67□□□□□ -1.66
USP48-211ENST00000526044 FAM81BQ96LP2 452 aa4.67□□□□□ -1.66
USP48-211ENST00000526044 ZNF560Q96MR9 790 aa4.67□□□□□ -1.66
USP48-211ENST00000526044 ERGIC2Q96RQ1 377 aa4.67□□□□□ -1.66
USP48-211ENST00000526044 MMS19Q96T76 1030 aa4.67□□□□□ -1.66
USP48-211ENST00000526044 PAAF1Q9BRP4 392 aa4.67□□□□□ -1.66
USP48-211ENST00000526044 PI4K2AQ9BTU6 479 aa4.67□□□□□ -1.66
USP48-211ENST00000526044 MAGEB5Q9BZ81 275 aa4.67□□□□□ -1.66
USP48-211ENST00000526044 INTS2Q9H0H0 1204 aaKnown RBP4.67□□□□□ -1.66
USP48-211ENST00000526044 RSPH9Q9H1X1 276 aaPredicted RBP4.67□□□□□ -1.66
USP48-211ENST00000526044 CWH43Q9H720 699 aa4.67□□□□□ -1.66
USP48-211ENST00000526044 UBE2TQ9NPD8 197 aaPredicted RBP4.67□□□□□ -1.66
USP48-211ENST00000526044 PLCB1Q9NQ66 1216 aa4.67□□□□□ -1.66
USP48-211ENST00000526044 SNX15Q9NRS6 342 aa4.67□□□□□ -1.66
USP48-211ENST00000526044 GCNT4Q9P109 453 aa4.67□□□□□ -1.66
USP48-211ENST00000526044 MYO1AQ9UBC5 1043 aa4.67□□□□□ -1.66
USP48-211ENST00000526044 MGAT4CQ9UBM8 478 aa4.67□□□□□ -1.66
USP48-211ENST00000526044 DNAJB4Q9UDY4 337 aa4.67□□□□□ -1.66
USP48-211ENST00000526044 TUBGCP4Q9UGJ1 667 aa4.67□□□□□ -1.66
USP48-211ENST00000526044 STEAP1Q9UHE8 339 aa4.67□□□□□ -1.66
USP48-211ENST00000526044 SIX4Q9UIU6 781 aa4.67□□□□□ -1.66
USP48-211ENST00000526044 DNAJC12Q9UKB3 198 aa4.67□□□□□ -1.66
USP48-211ENST00000526044 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP4.67□□□□□ -1.663e-19■□□□□ 9.5
USP48-211ENST00000526044 PTPRSQ13332 1948 aa4.67□□□□□ -1.66
USP48-211ENST00000526044 A0A1W2PPC4 97 aa4.66□□□□□ -1.66
USP48-211ENST00000526044 ARHGEF37A1IGU5 675 aa4.66□□□□□ -1.66
USP48-211ENST00000526044 CYB561D2O14569 222 aa4.66□□□□□ -1.66
USP48-211ENST00000526044 SPRY2O43597 315 aa4.66□□□□□ -1.66
USP48-211ENST00000526044 TMPRSS11DO60235 418 aa4.66□□□□□ -1.66
USP48-211ENST00000526044 HUS1O60921 280 aa4.66□□□□□ -1.66
USP48-211ENST00000526044 ASS1P00966 412 aaKnown RBP4.66□□□□□ -1.66
USP48-211ENST00000526044 TPM1P09493 284 aa4.66□□□□□ -1.66
USP48-211ENST00000526044 MYL4P12829 197 aa4.66□□□□□ -1.66
USP48-211ENST00000526044 TRIM21P19474 475 aaKnown RBP4.66□□□□□ -1.66
USP48-211ENST00000526044 TBXAS1P24557 533 aaPredicted RBP4.66□□□□□ -1.66
USP48-211ENST00000526044 NTSR1P30989 418 aa4.66□□□□□ -1.66
USP48-211ENST00000526044 GNL1P36915 607 aaPredicted RBP4.66□□□□□ -1.66
USP48-211ENST00000526044 PBX1P40424 430 aa4.66□□□□□ -1.66
USP48-211ENST00000526044 HTR3AP46098 478 aa4.66□□□□□ -1.66
USP48-211ENST00000526044 SLC11A1P49279 550 aa4.66□□□□□ -1.66
USP48-211ENST00000526044 KLK7P49862 253 aa4.66□□□□□ -1.66
USP48-211ENST00000526044 COPAP53621 1224 aa4.66□□□□□ -1.66
USP48-211ENST00000526044 MFAP3P55082 362 aa4.66□□□□□ -1.66
USP48-211ENST00000526044 TNNC1P63316 161 aa4.66□□□□□ -1.66
USP48-211ENST00000526044 TUBA4AP68366 448 aa4.66□□□□□ -1.66
USP48-211ENST00000526044 PSG6Q00889 435 aa4.66□□□□□ -1.66
USP48-211ENST00000526044 DSC1Q08554 894 aa4.66□□□□□ -1.66
USP48-211ENST00000526044 ZNF699Q32M78 642 aa4.66□□□□□ -1.66
USP48-211ENST00000526044 ARL13BQ3SXY8 428 aa4.66□□□□□ -1.66
USP48-211ENST00000526044 COLEC12Q5KU26 742 aa4.66□□□□□ -1.66
USP48-211ENST00000526044 SPECC1LQ69YQ0 1117 aa4.66□□□□□ -1.66
USP48-211ENST00000526044 SPOPLQ6IQ16 392 aa4.66□□□□□ -1.66
USP48-211ENST00000526044 TRIM65Q6PJ69 517 aa4.66□□□□□ -1.66
USP48-211ENST00000526044 CD300LGQ6UXG3 332 aa4.66□□□□□ -1.66
USP48-211ENST00000526044 RRAGAQ7L523 313 aa4.66□□□□□ -1.66
USP48-211ENST00000526044 ENOSF1Q7L5Y1 443 aa4.66□□□□□ -1.66
USP48-211ENST00000526044 CACNA2D4Q7Z3S7 1137 aa4.66□□□□□ -1.66
USP48-211ENST00000526044 ARHGAP30Q7Z6I6 1101 aaPredicted RBP4.66□□□□□ -1.66
USP48-211ENST00000526044 METTL23Q86XA0 190 aa4.66□□□□□ -1.66
USP48-211ENST00000526044 TDHQ8IZJ6 230 aa4.66□□□□□ -1.66
USP48-211ENST00000526044 METTL25Q8N6Q8 603 aa4.66□□□□□ -1.66
USP48-211ENST00000526044 C11orf44Q8N8P7 122 aa4.66□□□□□ -1.66
USP48-211ENST00000526044 APPL2Q8NEU8 664 aa4.66□□□□□ -1.66
USP48-211ENST00000526044 ZNF397Q8NF99 534 aaPredicted RBP4.66□□□□□ -1.66
USP48-211ENST00000526044 DPF1Q92782 380 aa4.66□□□□□ -1.66
USP48-211ENST00000526044 JAKMIP2Q96AA8 810 aa4.66□□□□□ -1.66
USP48-211ENST00000526044 ERP27Q96DN0 273 aa4.66□□□□□ -1.66
USP48-211ENST00000526044 VPS50Q96JG6 964 aa4.66□□□□□ -1.66
USP48-211ENST00000526044 ZNF558Q96NG5 402 aa4.66□□□□□ -1.66
USP48-211ENST00000526044 SELENOOQ9BVL4 669 aa4.66□□□□□ -1.66
USP48-211ENST00000526044 EDEM3Q9BZQ6 932 aa4.66□□□□□ -1.66
USP48-211ENST00000526044 DNAI2Q9GZS0 605 aa4.66□□□□□ -1.66
USP48-211ENST00000526044 SLC25A32Q9H2D1 315 aa4.66□□□□□ -1.66
USP48-211ENST00000526044 CYP3A43Q9HB55 503 aa4.66□□□□□ -1.66
USP48-211ENST00000526044 ZBTB26Q9HCK0 441 aa4.66□□□□□ -1.66
USP48-211ENST00000526044 FAM207AQ9NSI2 230 aaPredicted RBP4.66□□□□□ -1.66
USP48-211ENST00000526044 GDAP2Q9NXN4 497 aa4.66□□□□□ -1.66
USP48-211ENST00000526044 CLIC5Q9NZA1 410 aa4.66□□□□□ -1.66
USP48-211ENST00000526044 SPG21Q9NZD8 308 aa4.66□□□□□ -1.66
USP48-211ENST00000526044 CACNG4Q9UBN1 327 aa4.66□□□□□ -1.66
USP48-211ENST00000526044 LPAR3Q9UBY5 353 aa4.66□□□□□ -1.66
USP48-211ENST00000526044 ZNF69Q9UC07 566 aa4.66□□□□□ -1.66
USP48-211ENST00000526044 VPS51Q9UID3 782 aa4.66□□□□□ -1.66
USP48-211ENST00000526044 RIMKLBQ9ULI2 386 aa4.66□□□□□ -1.66
USP48-211ENST00000526044 SLC27A6Q9Y2P4 619 aa4.66□□□□□ -1.66
USP48-211ENST00000526044 PRG3Q9Y2Y8 225 aaPredicted RBP4.66□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 80.4 ms