RNA–Protein interactions for RNA: ENST00000514987.5

NUP54-217, Transcript of nucleoporin 54, humanhuman

TSL 2 BASIC

Gene NUP54, Length 1,563 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-217ENST00000514987 SIX3O95343 332 aaPredicted RBP14.77□□□□□ -0.05
NUP54-217ENST00000514987 C1RP00736 705 aa14.77□□□□□ -0.05
NUP54-217ENST00000514987 SOD2P04179 222 aa14.77□□□□□ -0.05
NUP54-217ENST00000514987 RPL17P18621 184 aaKnown RBP14.77□□□□□ -0.05
NUP54-217ENST00000514987 ARF5P84085 180 aa14.77□□□□□ -0.05
NUP54-217ENST00000514987 RHDQ02161 417 aa14.77□□□□□ -0.05
NUP54-217ENST00000514987 FOLH1Q04609 750 aa14.77□□□□□ -0.05
NUP54-217ENST00000514987 FOXM1Q08050 763 aa14.77□□□□□ -0.05
NUP54-217ENST00000514987 GRM2Q14416 872 aa14.77□□□□□ -0.05
NUP54-217ENST00000514987 SETMARQ53H47 684 aaPredicted RBP14.77□□□□□ -0.05
NUP54-217ENST00000514987 OGFOD2Q6N063 350 aa14.77□□□□□ -0.05
NUP54-217ENST00000514987 DDIASQ8IXT1 998 aa14.77□□□□□ -0.05
NUP54-217ENST00000514987 TTC30BQ8N4P2 665 aa14.77□□□□□ -0.05
NUP54-217ENST00000514987 CHCHD4Q8N4Q1 142 aa14.77□□□□□ -0.05
NUP54-217ENST00000514987 PCDH20Q8N6Y1 951 aaKnown RBP14.77□□□□□ -0.05
NUP54-217ENST00000514987 SH3RF2Q8TEC5 729 aa14.77□□□□□ -0.05
NUP54-217ENST00000514987 TRPC4APQ8TEL6 797 aa14.77□□□□□ -0.05
NUP54-217ENST00000514987 FUBP1Q96AE4 644 aaKnown RBP14.77□□□□□ -0.05
NUP54-217ENST00000514987 PBXIP1Q96AQ6 731 aa14.77□□□□□ -0.05
NUP54-217ENST00000514987 PDLIM5Q96HC4 596 aaKnown RBP14.77□□□□□ -0.05
NUP54-217ENST00000514987 EXOC2Q96KP1 924 aa14.77□□□□□ -0.05
NUP54-217ENST00000514987 BIRC8Q96P09 236 aa14.77□□□□□ -0.05
NUP54-217ENST00000514987 TRIM15Q9C019 465 aa14.77□□□□□ -0.05
NUP54-217ENST00000514987 GID8Q9NWU2 228 aa14.77□□□□□ -0.05
NUP54-217ENST00000514987 CD300AQ9UGN4 299 aa14.77□□□□□ -0.05
NUP54-217ENST00000514987 PACSIN3Q9UKS6 424 aa14.77□□□□□ -0.05
NUP54-217ENST00000514987 FAM50BQ9Y247 325 aa14.77□□□□□ -0.05
NUP54-217ENST00000514987 MED16Q9Y2X0 877 aa14.77□□□□□ -0.05
NUP54-217ENST00000514987 PKP3Q9Y446 797 aa14.77□□□□□ -0.05
NUP54-217ENST00000514987 PCDHGC4Q9Y5F7 938 aa14.77□□□□□ -0.05
NUP54-217ENST00000514987 ACTL7AQ9Y615 435 aa14.77□□□□□ -0.05
NUP54-217ENST00000514987 H0Y626 953 aa14.76□□□□□ -0.05
NUP54-217ENST00000514987 PIP5K1BO14986 540 aa14.76□□□□□ -0.05
NUP54-217ENST00000514987 TSPAN3O60637 253 aa14.76□□□□□ -0.05
NUP54-217ENST00000514987 RNASEH1O60930 286 aaKnown RBP14.76□□□□□ -0.05
NUP54-217ENST00000514987 ESRRBO95718 433 aa14.76□□□□□ -0.05
NUP54-217ENST00000514987 UROSP10746 265 aa14.76□□□□□ -0.05
NUP54-217ENST00000514987 TSPAN8P19075 237 aa14.76□□□□□ -0.05
NUP54-217ENST00000514987 MAPK8P45983 427 aa14.76□□□□□ -0.05
NUP54-217ENST00000514987 SGSHP51688 502 aa14.76□□□□□ -0.05
NUP54-217ENST00000514987 AP1S1P61966 158 aa14.76□□□□□ -0.05
NUP54-217ENST00000514987 CACNG1Q06432 222 aa14.76□□□□□ -0.05
NUP54-217ENST00000514987 TRAF2Q12933 501 aa14.76□□□□□ -0.05
NUP54-217ENST00000514987 PDK3Q15120 406 aa14.76□□□□□ -0.05
NUP54-217ENST00000514987 RPS6KA2Q15349 733 aa14.76□□□□□ -0.05
NUP54-217ENST00000514987 TSNQ15631 228 aaKnown RBP14.76□□□□□ -0.05
NUP54-217ENST00000514987 ZRANB3Q5FWF4 1079 aa14.76□□□□□ -0.05
NUP54-217ENST00000514987 PAOXQ6QHF9 649 aa14.76□□□□□ -0.05
NUP54-217ENST00000514987 TICAM1Q8IUC6 712 aa14.76□□□□□ -0.05
NUP54-217ENST00000514987 MARVELD2Q8N4S9 558 aa14.76□□□□□ -0.05
NUP54-217ENST00000514987 GOLM1Q8NBJ4 401 aa14.76□□□□□ -0.05
NUP54-217ENST00000514987 OR56A4Q8NGH8 313 aa14.76□□□□□ -0.05
NUP54-217ENST00000514987 ZNF483Q8TF39 744 aaPredicted RBP14.76□□□□□ -0.05
NUP54-217ENST00000514987 C3orf30Q96M34 536 aa14.76□□□□□ -0.05
NUP54-217ENST00000514987 NSMCE3Q96MG7 304 aa14.76□□□□□ -0.05
NUP54-217ENST00000514987 HERC2P3Q9BVR0 1158 aa14.76□□□□□ -0.05
NUP54-217ENST00000514987 HIPK3Q9H422 1215 aa14.76□□□□□ -0.05
NUP54-217ENST00000514987 MAGEE1Q9HCI5 957 aa14.76□□□□□ -0.05
NUP54-217ENST00000514987 SDR39U1Q9NRG7 319 aaPredicted RBP14.76□□□□□ -0.05
NUP54-217ENST00000514987 LHX3Q9UBR4 397 aa14.76□□□□□ -0.05
NUP54-217ENST00000514987 FKBPLQ9UIM3 349 aa14.76□□□□□ -0.05
NUP54-217ENST00000514987 A0A0J9YYE9 177 aa14.75□□□□□ -0.05
NUP54-217ENST00000514987 ATP6AP2A0A1C7CYW4 349 aa14.75□□□□□ -0.05
NUP54-217ENST00000514987 BTN3A1O00481 513 aa14.75□□□□□ -0.05
NUP54-217ENST00000514987 SNX2O60749 519 aa14.75□□□□□ -0.05
NUP54-217ENST00000514987 ATP6AP2O75787 350 aa14.75□□□□□ -0.05
NUP54-217ENST00000514987 ALDOCP09972 364 aaKnown RBP14.75□□□□□ -0.05
NUP54-217ENST00000514987 IRF1P10914 325 aa14.75□□□□□ -0.05
NUP54-217ENST00000514987 MBL2P11226 248 aaPredicted RBP14.75□□□□□ -0.05
NUP54-217ENST00000514987 CHN2P52757 468 aa14.75□□□□□ -0.05
NUP54-217ENST00000514987 EPHB3P54753 998 aa14.75□□□□□ -0.05
NUP54-217ENST00000514987 RHOAP61586 193 aa14.75□□□□□ -0.05
NUP54-217ENST00000514987 PLD1Q13393 1074 aa14.75□□□□□ -0.05
NUP54-217ENST00000514987 RAB33AQ14088 237 aa14.75□□□□□ -0.05
NUP54-217ENST00000514987 C16orf59Q7L2K0 433 aa14.75□□□□□ -0.05
NUP54-217ENST00000514987 METTL3Q86U44 580 aaKnown RBP14.75□□□□□ -0.05
NUP54-217ENST00000514987 GPSM1Q86YR5 675 aa14.75□□□□□ -0.05
NUP54-217ENST00000514987 MINDY1Q8N5J2 469 aa14.75□□□□□ -0.05
NUP54-217ENST00000514987 RNF148Q8N7C7 305 aa14.75□□□□□ -0.05
NUP54-217ENST00000514987 EFHBQ8N7U6 833 aa14.75□□□□□ -0.05
NUP54-217ENST00000514987 ZUFSPQ96AP4 578 aa14.75□□□□□ -0.05
NUP54-217ENST00000514987 TUBGCP3Q96CW5 907 aa14.75□□□□□ -0.05
NUP54-217ENST00000514987 TUBGCP5Q96RT8 1024 aa14.75□□□□□ -0.05
NUP54-217ENST00000514987 CENPKQ9BS16 269 aa14.75□□□□□ -0.05
NUP54-217ENST00000514987 FEM1AQ9BSK4 669 aa14.75□□□□□ -0.05
NUP54-217ENST00000514987 VN1R3Q9BXE9 311 aa14.75□□□□□ -0.05
NUP54-217ENST00000514987 RNF38Q9H0F5 515 aa14.75□□□□□ -0.05
NUP54-217ENST00000514987 COPS7BQ9H9Q2 264 aaPredicted RBP14.75□□□□□ -0.05
NUP54-217ENST00000514987 AP4S1Q9Y587 144 aa14.75□□□□□ -0.05
NUP54-217ENST00000514987 SLC30A1Q9Y6M5 507 aa14.75□□□□□ -0.05
NUP54-217ENST00000514987 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP14.74□□□□□ -0.05
NUP54-217ENST00000514987 TCRBV3S1A0A5B6 114 aa14.74□□□□□ -0.05
NUP54-217ENST00000514987 CAPN8A6NHC0 703 aa14.74□□□□□ -0.05
NUP54-217ENST00000514987 E5RI56 91 aa14.74□□□□□ -0.05
NUP54-217ENST00000514987 PRRG1O14668 218 aa14.74□□□□□ -0.05
NUP54-217ENST00000514987 ANGPT2O15123 496 aa14.74□□□□□ -0.05
NUP54-217ENST00000514987 FZD6O60353 706 aa14.74□□□□□ -0.05
NUP54-217ENST00000514987 TBL1XO60907 577 aa14.74□□□□□ -0.05
NUP54-217ENST00000514987 FKTNO75072 461 aa14.74□□□□□ -0.05
NUP54-217ENST00000514987 SLC7A1P30825 629 aa14.74□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms