RNA–Protein interactions for RNA: ENST00000512820.5

LIMCH1-216, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,071 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-216ENST00000512820 SLC44A2Q8IWA5 706 aaPredicted RBP8.37□□□□□ -1.07
LIMCH1-216ENST00000512820 SYTL1Q8IYJ3 562 aa8.37□□□□□ -1.07
LIMCH1-216ENST00000512820 KLHL23Q8NBE8 558 aa8.37□□□□□ -1.07
LIMCH1-216ENST00000512820 S100ZQ8WXG8 99 aa8.37□□□□□ -1.07
LIMCH1-216ENST00000512820 HSPBAP1Q96EW2 488 aa8.37□□□□□ -1.07
LIMCH1-216ENST00000512820 BTN2A3PQ96KV6 586 aa8.37□□□□□ -1.07
LIMCH1-216ENST00000512820 REXO4Q9GZR2 422 aaKnown RBP8.37□□□□□ -1.07
LIMCH1-216ENST00000512820 OSBPL2Q9H1P3 480 aa8.37□□□□□ -1.07
LIMCH1-216ENST00000512820 SLC27A5Q9Y2P5 690 aa8.37□□□□□ -1.07
LIMCH1-216ENST00000512820 ECM29Q5VYK3 1845 aa8.37□□□□□ -1.07
LIMCH1-216ENST00000512820 G3V2L1 256 aa8.37□□□□□ -1.07
LIMCH1-216ENST00000512820 NFKBIEO00221 500 aa8.37□□□□□ -1.07
LIMCH1-216ENST00000512820 IRAK2O43187 625 aa8.37□□□□□ -1.07
LIMCH1-216ENST00000512820 OR4F21O95013 312 aa8.37□□□□□ -1.07
LIMCH1-216ENST00000512820 SLC35E2BP0CK96 405 aa8.37□□□□□ -1.07
LIMCH1-216ENST00000512820 CHI3L1P36222 383 aaPredicted RBP8.37□□□□□ -1.07
LIMCH1-216ENST00000512820 YAP1P46937 504 aaKnown RBP8.37□□□□□ -1.07
LIMCH1-216ENST00000512820 ALDH7A1P49419 539 aaKnown RBP8.37□□□□□ -1.07
LIMCH1-216ENST00000512820 TUBA4AP68366 448 aa8.37□□□□□ -1.07
LIMCH1-216ENST00000512820 TUSC3Q13454 348 aa8.37□□□□□ -1.07
LIMCH1-216ENST00000512820 HEATR4Q86WZ0 1026 aa8.37□□□□□ -1.07
LIMCH1-216ENST00000512820 DRAXINQ8NBI3 349 aaPredicted RBP8.37□□□□□ -1.07
LIMCH1-216ENST00000512820 PSMA8Q8TAA3 256 aa8.37□□□□□ -1.07
LIMCH1-216ENST00000512820 SPPL2BQ8TCT7 592 aa8.37□□□□□ -1.07
LIMCH1-216ENST00000512820 HAPLN3Q96S86 360 aa8.37□□□□□ -1.07
LIMCH1-216ENST00000512820 CEP44Q9C0F1 390 aa8.37□□□□□ -1.07
LIMCH1-216ENST00000512820 ZNF696Q9H7X3 374 aa8.37□□□□□ -1.07
LIMCH1-216ENST00000512820 PRDM5Q9NQX1 630 aaPredicted RBP8.37□□□□□ -1.07
LIMCH1-216ENST00000512820 ABCB10Q9NRK6 738 aa8.37□□□□□ -1.07
LIMCH1-216ENST00000512820 ADPRHL2Q9NX46 363 aa8.37□□□□□ -1.07
LIMCH1-216ENST00000512820 AGO1Q9UL18 857 aaKnown RBP8.37□□□□□ -1.07
LIMCH1-216ENST00000512820 PDZK1P1A8MUH7 402 aa8.37□□□□□ -1.07
LIMCH1-216ENST00000512820 F8W810 466 aa8.37□□□□□ -1.07
LIMCH1-216ENST00000512820 GABRDO14764 452 aa8.37□□□□□ -1.07
LIMCH1-216ENST00000512820 DCLK1O15075 740 aa8.37□□□□□ -1.07
LIMCH1-216ENST00000512820 ANXA5P08758 320 aa8.37□□□□□ -1.07
LIMCH1-216ENST00000512820 EDNRBP24530 442 aa8.37□□□□□ -1.07
LIMCH1-216ENST00000512820 BOP1Q14137 746 aaKnown RBP8.37□□□□□ -1.07
LIMCH1-216ENST00000512820 CPSF6Q16630 551 aaKnown RBP eCLIP8.37□□□□□ -1.07
LIMCH1-216ENST00000512820 PARP15Q460N3 678 aa8.37□□□□□ -1.07
LIMCH1-216ENST00000512820 PIGGQ5H8A4 983 aa8.37□□□□□ -1.07
LIMCH1-216ENST00000512820 CLHC1Q8NHS4 586 aa8.37□□□□□ -1.07
LIMCH1-216ENST00000512820 PNPT1Q8TCS8 783 aaKnown RBP8.37□□□□□ -1.07
LIMCH1-216ENST00000512820 WDR83Q9BRX9 315 aaKnown RBP8.37□□□□□ -1.07
LIMCH1-216ENST00000512820 RERGLQ9H628 205 aa8.37□□□□□ -1.07
LIMCH1-216ENST00000512820 ZDHHC7Q9NXF8 308 aa8.37□□□□□ -1.07
LIMCH1-216ENST00000512820 GMIPQ9P107 970 aa8.37□□□□□ -1.07
LIMCH1-216ENST00000512820 LOC100506127A0A0U1RQW1 187 aa8.36□□□□□ -1.07
LIMCH1-216ENST00000512820 SH3BGRLO75368 114 aa8.36□□□□□ -1.07
LIMCH1-216ENST00000512820 IQCF3P0C7M6 154 aa8.36□□□□□ -1.07
LIMCH1-216ENST00000512820 PBX3P40426 434 aa8.36□□□□□ -1.07
LIMCH1-216ENST00000512820 NDST2P52849 883 aa8.36□□□□□ -1.07
LIMCH1-216ENST00000512820 DNAJB13P59910 316 aa8.36□□□□□ -1.07
LIMCH1-216ENST00000512820 UBE3AQ05086 875 aa8.36□□□□□ -1.07
LIMCH1-216ENST00000512820 HIST2H2ACQ16777 129 aaPredicted RBP8.36□□□□□ -1.07
LIMCH1-216ENST00000512820 INTS11Q5TA45 600 aaKnown RBP8.36□□□□□ -1.07
LIMCH1-216ENST00000512820 RSBN1Q5VWQ0 802 aaPredicted RBP8.36□□□□□ -1.07
LIMCH1-216ENST00000512820 HIST2H2AA3Q6FI13 130 aa8.36□□□□□ -1.07
LIMCH1-216ENST00000512820 PIM3Q86V86 326 aa8.36□□□□□ -1.07
LIMCH1-216ENST00000512820 ARRDC4Q8NCT1 418 aa8.36□□□□□ -1.07
LIMCH1-216ENST00000512820 OTULINQ96BN8 352 aa8.36□□□□□ -1.07
LIMCH1-216ENST00000512820 ZHX1-C8orf76Q96EF9 292 aa8.36□□□□□ -1.07
LIMCH1-216ENST00000512820 ZNF778Q96MU6 729 aa8.36□□□□□ -1.07
LIMCH1-216ENST00000512820 SMOQ99835 787 aa8.36□□□□□ -1.07
LIMCH1-216ENST00000512820 WDR12Q9GZL7 423 aaKnown RBP8.36□□□□□ -1.07
LIMCH1-216ENST00000512820 KIAA1551Q9HCM1 1747 aa8.36□□□□□ -1.07
LIMCH1-216ENST00000512820 PIRO00625 290 aa8.36□□□□□ -1.07
LIMCH1-216ENST00000512820 TRIM24O15164 1050 aa8.36□□□□□ -1.07
LIMCH1-216ENST00000512820 TULP3O75386 442 aa8.36□□□□□ -1.07
LIMCH1-216ENST00000512820 COX7A2P14406 83 aa8.36□□□□□ -1.07
LIMCH1-216ENST00000512820 ZNF12P17014 697 aa8.36□□□□□ -1.07
LIMCH1-216ENST00000512820 ZNF37AP17032 561 aaPredicted RBP8.36□□□□□ -1.07
LIMCH1-216ENST00000512820 DDX5P17844 614 aaKnown RBP8.36□□□□□ -1.07
LIMCH1-216ENST00000512820 RRM2P31350 389 aa8.36□□□□□ -1.07
LIMCH1-216ENST00000512820 IDH2P48735 452 aaKnown RBP8.36□□□□□ -1.07
LIMCH1-216ENST00000512820 CXCR3P49682 368 aa8.36□□□□□ -1.07
LIMCH1-216ENST00000512820 SULT2A1Q06520 285 aa8.36□□□□□ -1.07
LIMCH1-216ENST00000512820 BCL2L1Q07817 233 aa8.36□□□□□ -1.07
LIMCH1-216ENST00000512820 CBX3Q13185 183 aa8.36□□□□□ -1.07
LIMCH1-216ENST00000512820 INO80DQ53TQ3 878 aaPredicted RBP8.36□□□□□ -1.07
LIMCH1-216ENST00000512820 CHSY3Q70JA7 882 aa8.36□□□□□ -1.07
LIMCH1-216ENST00000512820 BBS7Q8IWZ6 715 aa8.36□□□□□ -1.07
LIMCH1-216ENST00000512820 PDPRQ8NCN5 879 aa8.36□□□□□ -1.07
LIMCH1-216ENST00000512820 TRPV3Q8NET8 790 aa8.36□□□□□ -1.07
LIMCH1-216ENST00000512820 ARNTL2Q8WYA1 636 aa8.36□□□□□ -1.07
LIMCH1-216ENST00000512820 RBM4BQ9BQ04 359 aaKnown RBP8.36□□□□□ -1.07
LIMCH1-216ENST00000512820 RBM4Q9BWF3 364 aaKnown RBP8.36□□□□□ -1.07
LIMCH1-216ENST00000512820 SPON1Q9HCB6 807 aa8.36□□□□□ -1.07
LIMCH1-216ENST00000512820 GIMAP2Q9UG22 337 aa8.36□□□□□ -1.07
LIMCH1-216ENST00000512820 GNPTGQ9UJJ9 305 aa8.36□□□□□ -1.07
LIMCH1-216ENST00000512820 TMCC3Q9ULS5 477 aa8.36□□□□□ -1.07
LIMCH1-216ENST00000512820 COQ6Q9Y2Z9 468 aa8.36□□□□□ -1.07
LIMCH1-216ENST00000512820 GLI3P10071 1580 aa8.36□□□□□ -1.07
LIMCH1-216ENST00000512820 CCDC162PA2VCL2 907 aa8.36□□□□□ -1.07
LIMCH1-216ENST00000512820 ARL5CA6NH57 179 aa8.36□□□□□ -1.07
LIMCH1-216ENST00000512820 TLR5O60602 858 aa8.36□□□□□ -1.07
LIMCH1-216ENST00000512820 PFKMP08237 780 aa8.36□□□□□ -1.07
LIMCH1-216ENST00000512820 CNPP09543 421 aaKnown RBP8.36□□□□□ -1.07
LIMCH1-216ENST00000512820 CYP2A7P20853 494 aa8.36□□□□□ -1.07
LIMCH1-216ENST00000512820 KRT20P35900 424 aa8.36□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms