RNA–Protein interactions for RNA: ENST00000509769.5

USP53-205, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-205ENST00000509769 ITGAVP06756 1048 aa3.56□□□□□ -1.84
USP53-205ENST00000509769 GZMAP12544 262 aa3.56□□□□□ -1.84
USP53-205ENST00000509769 GYS1P13807 737 aa3.56□□□□□ -1.84
USP53-205ENST00000509769 NAT1P18440 290 aa3.56□□□□□ -1.84
USP53-205ENST00000509769 EPHB2P29323 1055 aa3.56□□□□□ -1.84
USP53-205ENST00000509769 HPCAL1P37235 193 aa3.56□□□□□ -1.84
USP53-205ENST00000509769 RFC3P40938 356 aa3.56□□□□□ -1.84
USP53-205ENST00000509769 MAGEB1P43366 347 aa3.56□□□□□ -1.84
USP53-205ENST00000509769 SLC1A6P48664 564 aa3.56□□□□□ -1.84
USP53-205ENST00000509769 CENPAP49450 140 aa3.56□□□□□ -1.84
USP53-205ENST00000509769 HSD17B4P51659 736 aa3.56□□□□□ -1.84
USP53-205ENST00000509769 DCDC1P59894 354 aa3.56□□□□□ -1.84
USP53-205ENST00000509769 PPP3R1P63098 170 aa3.56□□□□□ -1.84
USP53-205ENST00000509769 FOXM1Q08050 763 aa3.56□□□□□ -1.84
USP53-205ENST00000509769 IL18Q14116 193 aa3.56□□□□□ -1.84
USP53-205ENST00000509769 FASTKQ14296 549 aaKnown RBP3.56□□□□□ -1.84
USP53-205ENST00000509769 ZNF267Q14586 743 aaPredicted RBP3.56□□□□□ -1.84
USP53-205ENST00000509769 PEA15Q15121 130 aa3.56□□□□□ -1.84
USP53-205ENST00000509769 MTHFSDQ2M296 383 aaKnown RBP3.56□□□□□ -1.84
USP53-205ENST00000509769 AFMIDQ63HM1 303 aa3.56□□□□□ -1.84
USP53-205ENST00000509769 PPP2R2DQ66LE6 453 aa3.56□□□□□ -1.84
USP53-205ENST00000509769 MRNIPQ6NTE8 343 aa3.56□□□□□ -1.84
USP53-205ENST00000509769 XRRA1Q6P2D8 792 aa3.56□□□□□ -1.84
USP53-205ENST00000509769 FOXR2Q6PJQ5 311 aa3.56□□□□□ -1.84
USP53-205ENST00000509769 PLEKHG7Q6ZR37 379 aa3.56□□□□□ -1.84
USP53-205ENST00000509769 DCDC5Q6ZRR9 648 aa3.56□□□□□ -1.84
USP53-205ENST00000509769 MOB2Q70IA6 237 aa3.56□□□□□ -1.84
USP53-205ENST00000509769 FAM160B2Q86V87 743 aa3.56□□□□□ -1.84
USP53-205ENST00000509769 LIX1LQ8IVB5 337 aa3.56□□□□□ -1.84
USP53-205ENST00000509769 GLYCTKQ8IVS8 523 aa3.56□□□□□ -1.84
USP53-205ENST00000509769 ZNF561Q8N587 486 aa3.56□□□□□ -1.84
USP53-205ENST00000509769 NATD1Q8N6N6 113 aa3.56□□□□□ -1.84
USP53-205ENST00000509769 KLHDC1Q8N7A1 406 aa3.56□□□□□ -1.84
USP53-205ENST00000509769 PCSK9Q8NBP7 692 aaKnown RBP3.56□□□□□ -1.84
USP53-205ENST00000509769 OR2AP1Q8NGE2 309 aa3.56□□□□□ -1.84
USP53-205ENST00000509769 PIWIL2Q8TC59 973 aaKnown RBP3.56□□□□□ -1.84
USP53-205ENST00000509769 RIT1Q92963 219 aa3.56□□□□□ -1.84
USP53-205ENST00000509769 UBE2E3Q969T4 207 aa3.56□□□□□ -1.84
USP53-205ENST00000509769 ZNF578Q96N58 590 aaPredicted RBP3.56□□□□□ -1.84
USP53-205ENST00000509769 CDK15Q96Q40 435 aa3.56□□□□□ -1.84
USP53-205ENST00000509769 GCNAQ96QF7 691 aa3.56□□□□□ -1.84
USP53-205ENST00000509769 EYA3Q99504 573 aa3.56□□□□□ -1.84
USP53-205ENST00000509769 SPATA9Q9BWV2 254 aa3.56□□□□□ -1.84
USP53-205ENST00000509769 ADGRE3Q9BY15 652 aa3.56□□□□□ -1.84
USP53-205ENST00000509769 ULBP1Q9BZM6 244 aa3.56□□□□□ -1.84
USP53-205ENST00000509769 C1orf21Q9H246 121 aa3.56□□□□□ -1.84
USP53-205ENST00000509769 TNKS2Q9H2K2 1166 aa3.56□□□□□ -1.84
USP53-205ENST00000509769 NMRAL1Q9HBL8 299 aa3.56□□□□□ -1.84
USP53-205ENST00000509769 NUDT15Q9NV35 164 aa3.56□□□□□ -1.84
USP53-205ENST00000509769 B3GNT2Q9NY97 397 aa3.56□□□□□ -1.84
USP53-205ENST00000509769 UXTQ9UBK9 157 aaPredicted RBP3.56□□□□□ -1.84
USP53-205ENST00000509769 ACAD8Q9UKU7 415 aa3.56□□□□□ -1.84
USP53-205ENST00000509769 TLR6Q9Y2C9 796 aa3.56□□□□□ -1.84
USP53-205ENST00000509769 PCDHGB5Q9Y5G0 923 aa3.56□□□□□ -1.84
USP53-205ENST00000509769 V9GY48 417 aaPredicted RBP3.56□□□□□ -1.84
USP53-205ENST00000509769 CPSF1Q10570 1443 aaKnown RBP3.56□□□□□ -1.84
USP53-205ENST00000509769 KAT6BQ8WYB5 2073 aa3.56□□□□□ -1.84
USP53-205ENST00000509769 E9PCH4 1651 aa3.56□□□□□ -1.84
USP53-205ENST00000509769 GNG14A0A1W2PPG7 69 aa3.56□□□□□ -1.84
USP53-205ENST00000509769 DHRS12A0PJE2 317 aa3.56□□□□□ -1.84
USP53-205ENST00000509769 CASKO14936 926 aa3.56□□□□□ -1.84
USP53-205ENST00000509769 PRPF4O43172 522 aaKnown RBP eCLIP3.56□□□□□ -1.84
USP53-205ENST00000509769 NPM3O75607 178 aaKnown RBP3.56□□□□□ -1.84
USP53-205ENST00000509769 TGFB3P10600 412 aa3.56□□□□□ -1.84
USP53-205ENST00000509769 HSD3B1P14060 373 aa3.56□□□□□ -1.84
USP53-205ENST00000509769 GNAZP19086 355 aa3.56□□□□□ -1.84
USP53-205ENST00000509769 FGFR4P22455 802 aa3.56□□□□□ -1.84
USP53-205ENST00000509769 CLK3P49761 638 aaKnown RBP3.56□□□□□ -1.84
USP53-205ENST00000509769 SLC7A2P52569 658 aa3.56□□□□□ -1.84
USP53-205ENST00000509769 NAGLUP54802 743 aa3.56□□□□□ -1.84
USP53-205ENST00000509769 FKBP1BP68106 108 aa3.56□□□□□ -1.84
USP53-205ENST00000509769 RNF4P78317 190 aa3.56□□□□□ -1.84
USP53-205ENST00000509769 CDC42EP1Q00587 391 aa3.56□□□□□ -1.84
USP53-205ENST00000509769 POU4F1Q01851 419 aa3.56□□□□□ -1.84
USP53-205ENST00000509769 HSPA14Q0VDF9 509 aa3.56□□□□□ -1.84
USP53-205ENST00000509769 IL23RQ5VWK5 629 aa3.56□□□□□ -1.84
USP53-205ENST00000509769 DENND1BQ6P3S1 775 aa3.56□□□□□ -1.84
USP53-205ENST00000509769 RIPOR1Q6ZS17 1223 aa3.56□□□□□ -1.84
USP53-205ENST00000509769 RBM43Q6ZSC3 357 aaKnown RBP3.56□□□□□ -1.84
USP53-205ENST00000509769 UBE2R2Q712K3 238 aaPredicted RBP3.56□□□□□ -1.84
USP53-205ENST00000509769 CEP68Q76N32 757 aa3.56□□□□□ -1.84
USP53-205ENST00000509769 DPH6Q7L8W6 267 aa3.56□□□□□ -1.84
USP53-205ENST00000509769 SNX20Q7Z614 316 aa3.56□□□□□ -1.84
USP53-205ENST00000509769 ZBTB33Q86T24 672 aa3.56□□□□□ -1.84
USP53-205ENST00000509769 ITIH5Q86UX2 942 aa3.56□□□□□ -1.84
USP53-205ENST00000509769 COMMD7Q86VX2 200 aa3.56□□□□□ -1.84
USP53-205ENST00000509769 TMEM192Q8IY95 271 aa3.56□□□□□ -1.84
USP53-205ENST00000509769 CLYBLQ8N0X4 340 aa3.56□□□□□ -1.84
USP53-205ENST00000509769 PGAM4Q8N0Y7 254 aa3.56□□□□□ -1.84
USP53-205ENST00000509769 GPD1LQ8N335 351 aa3.56□□□□□ -1.84
USP53-205ENST00000509769 ELMOD1Q8N336 334 aa3.56□□□□□ -1.84
USP53-205ENST00000509769 SLC7A13Q8TCU3 470 aa3.56□□□□□ -1.84
USP53-205ENST00000509769 CASKIN2Q8WXE0 1202 aa3.56□□□□□ -1.84
USP53-205ENST00000509769 TESCQ96BS2 214 aa3.56□□□□□ -1.84
USP53-205ENST00000509769 LRRC58Q96CX6 371 aa3.56□□□□□ -1.84
USP53-205ENST00000509769 RAB39BQ96DA2 213 aa3.56□□□□□ -1.84
USP53-205ENST00000509769 FAM167AQ96KS9 214 aa3.56□□□□□ -1.84
USP53-205ENST00000509769 CCNL2Q96S94 520 aaPredicted RBP3.56□□□□□ -1.84
USP53-205ENST00000509769 SLC13A1Q9BZW2 595 aa3.56□□□□□ -1.84
USP53-205ENST00000509769 ZDHHC5Q9C0B5 715 aa3.56□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms