RNA–Protein interactions for RNA: ENST00000496447.5

PTPRF-215, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 5,887 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-215ENST00000496447 PMF1Q6P1K2 205 aa13.1□□□□□ -0.31
PTPRF-215ENST00000496447 UXS1Q8NBZ7 420 aa13.1□□□□□ -0.31
PTPRF-215ENST00000496447 SUN5Q8TC36 379 aa13.1□□□□□ -0.31
PTPRF-215ENST00000496447 VPS35Q96QK1 796 aa13.1□□□□□ -0.31
PTPRF-215ENST00000496447 ZNF607Q96SK3 696 aa13.1□□□□□ -0.31
PTPRF-215ENST00000496447 CHID1Q9BWS9 393 aa13.1□□□□□ -0.31
PTPRF-215ENST00000496447 FGFBP2Q9BYJ0 223 aa13.1□□□□□ -0.31
PTPRF-215ENST00000496447 RHOJQ9H4E5 214 aa13.1□□□□□ -0.31
PTPRF-215ENST00000496447 POLR3HQ9Y535 204 aaPredicted RBP13.1□□□□□ -0.31
PTPRF-215ENST00000496447 COX4I1P13073 169 aa13.1□□□□□ -0.31
PTPRF-215ENST00000496447 BMP7P18075 431 aa13.1□□□□□ -0.31
PTPRF-215ENST00000496447 GRIA3P42263 894 aa13.1□□□□□ -0.31
PTPRF-215ENST00000496447 GABRB2P47870 512 aa13.1□□□□□ -0.31
PTPRF-215ENST00000496447 SRSF11Q05519 484 aaKnown RBP13.1□□□□□ -0.31
PTPRF-215ENST00000496447 BST1Q10588 318 aa13.1□□□□□ -0.31
PTPRF-215ENST00000496447 SEMA5AQ13591 1074 aa13.1□□□□□ -0.31
PTPRF-215ENST00000496447 DENND6AQ8IWF6 608 aa13.1□□□□□ -0.31
PTPRF-215ENST00000496447 METTL21AQ8WXB1 218 aa13.1□□□□□ -0.31
PTPRF-215ENST00000496447 HEPHQ9BQS7 1158 aa13.1□□□□□ -0.31
PTPRF-215ENST00000496447 ZDHHC4Q9NPG8 344 aa13.1□□□□□ -0.31
PTPRF-215ENST00000496447 ARHGEF4Q9NR80 690 aa13.1□□□□□ -0.31
PTPRF-215ENST00000496447 RBPJLQ9UBG7 517 aa13.1□□□□□ -0.31
PTPRF-215ENST00000496447 RHPN2P1A8MT19 583 aa13.1□□□□□ -0.31
PTPRF-215ENST00000496447 HDAC3O15379 428 aa13.1□□□□□ -0.31
PTPRF-215ENST00000496447 FGFR3P22607 806 aa13.1□□□□□ -0.31
PTPRF-215ENST00000496447 WARSP23381 471 aaKnown RBP13.1□□□□□ -0.31
PTPRF-215ENST00000496447 SLC26A9Q7LBE3 791 aa13.1□□□□□ -0.31
PTPRF-215ENST00000496447 TAC4Q86UU9 113 aa13.1□□□□□ -0.31
PTPRF-215ENST00000496447 OR7D4Q8NG98 312 aa13.1□□□□□ -0.31
PTPRF-215ENST00000496447 OR52E6Q96RD3 313 aa13.1□□□□□ -0.31
PTPRF-215ENST00000496447 MAGEH1Q9H213 219 aa13.1□□□□□ -0.31
PTPRF-215ENST00000496447 SPAG4Q9NPE6 437 aa13.1□□□□□ -0.31
PTPRF-215ENST00000496447 FCF1Q9Y324 198 aaKnown RBP13.1□□□□□ -0.31
PTPRF-215ENST00000496447 MAPKAPK2P49137 400 aa13.1□□□□□ -0.31
PTPRF-215ENST00000496447 PSME3P61289 254 aa13.1□□□□□ -0.31
PTPRF-215ENST00000496447 DSC2Q02487 901 aa13.1□□□□□ -0.31
PTPRF-215ENST00000496447 GPM6BQ13491 265 aa13.1□□□□□ -0.31
PTPRF-215ENST00000496447 ZNF57Q68EA5 555 aaPredicted RBP13.1□□□□□ -0.31
PTPRF-215ENST00000496447 ULK2Q8IYT8 1036 aa13.1□□□□□ -0.31
PTPRF-215ENST00000496447 NAT14Q8WUY8 206 aa13.1□□□□□ -0.31
PTPRF-215ENST00000496447 RACGAP1Q9H0H5 632 aa13.1□□□□□ -0.31
PTPRF-215ENST00000496447 SEMA3GQ9NS98 782 aa13.1□□□□□ -0.31
PTPRF-215ENST00000496447 DNAJC11Q9NVH1 559 aa13.1□□□□□ -0.31
PTPRF-215ENST00000496447 MBD2Q9UBB5 411 aa13.1□□□□□ -0.31
PTPRF-215ENST00000496447 RCCD1A6NED2 376 aa13.09□□□□□ -0.31
PTPRF-215ENST00000496447 KCNU1A8MYU2 1149 aa13.09□□□□□ -0.31
PTPRF-215ENST00000496447 BIRC5O15392 142 aa13.09□□□□□ -0.31
PTPRF-215ENST00000496447 S100A9P06702 114 aaKnown RBP13.09□□□□□ -0.31
PTPRF-215ENST00000496447 PRG2P13727 222 aa13.09□□□□□ -0.31
PTPRF-215ENST00000496447 CCNCP24863 283 aa13.09□□□□□ -0.31
PTPRF-215ENST00000496447 SP2Q02086 613 aa13.09□□□□□ -0.31
PTPRF-215ENST00000496447 HECTD2Q5U5R9 776 aa13.09□□□□□ -0.31
PTPRF-215ENST00000496447 NEK5Q6P3R8 708 aa13.09□□□□□ -0.31
PTPRF-215ENST00000496447 A0A0U1RQJ8 604 aa13.09□□□□□ -0.31
PTPRF-215ENST00000496447 CYP4F8P98187 520 aa13.09□□□□□ -0.31
PTPRF-215ENST00000496447 ZNF846Q147U1 533 aa13.09□□□□□ -0.31
PTPRF-215ENST00000496447 VITQ6UXI7 678 aa13.09□□□□□ -0.31
PTPRF-215ENST00000496447 CMC1Q7Z7K0 106 aa13.09□□□□□ -0.31
PTPRF-215ENST00000496447 CIR1Q86X95 450 aaPredicted RBP13.09□□□□□ -0.31
PTPRF-215ENST00000496447 C10orf107Q8IVU9 208 aa13.09□□□□□ -0.31
PTPRF-215ENST00000496447 IZUMO1Q8IYV9 350 aa13.09□□□□□ -0.31
PTPRF-215ENST00000496447 C8orf59Q8N0T1 100 aaPredicted RBP13.09□□□□□ -0.31
PTPRF-215ENST00000496447 ZNF563Q8TA94 476 aa13.09□□□□□ -0.31
PTPRF-215ENST00000496447 BRI3BPQ8WY22 251 aa13.09□□□□□ -0.31
PTPRF-215ENST00000496447 DPEP2Q9H4A9 486 aa13.09□□□□□ -0.31
PTPRF-215ENST00000496447 FAM124BQ9H5Z6 455 aaPredicted RBP13.09□□□□□ -0.31
PTPRF-215ENST00000496447 ATP6AP2A0A1C7CYW4 349 aa13.09□□□□□ -0.31
PTPRF-215ENST00000496447 ATP6AP2O75787 350 aa13.09□□□□□ -0.31
PTPRF-215ENST00000496447 IDO1P14902 403 aa13.09□□□□□ -0.31
PTPRF-215ENST00000496447 ITGAXP20702 1163 aa13.09□□□□□ -0.31
PTPRF-215ENST00000496447 CDH13P55290 713 aa13.09□□□□□ -0.31
PTPRF-215ENST00000496447 TLE2Q04725 743 aa13.09□□□□□ -0.31
PTPRF-215ENST00000496447 C9orf64Q5T6V5 341 aa13.09□□□□□ -0.31
PTPRF-215ENST00000496447 DUPD1Q68J44 220 aa13.09□□□□□ -0.31
PTPRF-215ENST00000496447 PHC3Q8NDX5 983 aa13.09□□□□□ -0.31
PTPRF-215ENST00000496447 ARHGEF3Q9NR81 526 aa13.09□□□□□ -0.31
PTPRF-215ENST00000496447 DNAAF2Q9NVR5 837 aaKnown RBP13.09□□□□□ -0.31
PTPRF-215ENST00000496447 MED1Q15648 1581 aaPredicted RBP13.09□□□□□ -0.31
PTPRF-215ENST00000496447 ZMPSTE24O75844 475 aa13.09□□□□□ -0.31
PTPRF-215ENST00000496447 UGT2B15P54855 530 aa13.09□□□□□ -0.31
PTPRF-215ENST00000496447 EPS8Q12929 822 aa13.09□□□□□ -0.31
PTPRF-215ENST00000496447 ATP13A5Q4VNC0 1218 aa13.09□□□□□ -0.31
PTPRF-215ENST00000496447 FAM171BQ6P995 826 aa13.09□□□□□ -0.31
PTPRF-215ENST00000496447 DEF8Q6ZN54 512 aa13.09□□□□□ -0.31
PTPRF-215ENST00000496447 SLC4A11Q8NBS3 891 aa13.09□□□□□ -0.31
PTPRF-215ENST00000496447 STYXQ8WUJ0 223 aa13.09□□□□□ -0.31
PTPRF-215ENST00000496447 LMLNQ96KR4 655 aa13.09□□□□□ -0.31
PTPRF-215ENST00000496447 C12orf42Q96LP6 360 aa13.09□□□□□ -0.31
PTPRF-215ENST00000496447 IL12RB2Q99665 862 aa13.09□□□□□ -0.31
PTPRF-215ENST00000496447 EXD2Q9NVH0 621 aa13.09□□□□□ -0.31
PTPRF-215ENST00000496447 PCDHGC3Q9UN70 934 aa13.09□□□□□ -0.31
PTPRF-215ENST00000496447 MYBPHLA2RUH7 354 aa13.08□□□□□ -0.31
PTPRF-215ENST00000496447 OR2AG2A6NM03 316 aa13.08□□□□□ -0.31
PTPRF-215ENST00000496447 ALOX15BO15296 676 aa13.08□□□□□ -0.31
PTPRF-215ENST00000496447 USP46P62068 366 aa13.08□□□□□ -0.31
PTPRF-215ENST00000496447 TCEAL5Q5H9L2 206 aa13.08□□□□□ -0.31
PTPRF-215ENST00000496447 RNASEH2BQ5TBB1 312 aaKnown RBP13.08□□□□□ -0.31
PTPRF-215ENST00000496447 MAGEE2Q8TD90 523 aaPredicted RBP13.08□□□□□ -0.31
PTPRF-215ENST00000496447 HMCESQ96FZ2 354 aa13.08□□□□□ -0.31
PTPRF-215ENST00000496447 OLFM1Q99784 485 aa13.08□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 67.6 ms