RNA–Protein interactions for RNA: ENST00000496116.1

CMSS1-208, Transcript of cms1 ribosomal small subunit homolog (yeast), humanhuman

TSL 1 (best)

Gene CMSS1, Length 2,145 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CMSS1-208ENST00000496116 UGT3A1Q6NUS8 523 aa11.01□□□□□ -0.65
CMSS1-208ENST00000496116 NCEH1Q6PIU2 408 aa11.01□□□□□ -0.65
CMSS1-208ENST00000496116 PAOXQ6QHF9 649 aa11.01□□□□□ -0.65
CMSS1-208ENST00000496116 EFL1Q7Z2Z2 1120 aaKnown RBP11.01□□□□□ -0.65
CMSS1-208ENST00000496116 STK40Q8N2I9 435 aa11.01□□□□□ -0.65
CMSS1-208ENST00000496116 MIER2Q8N344 545 aa11.01□□□□□ -0.65
CMSS1-208ENST00000496116 CARNMT1Q8N4J0 409 aa11.01□□□□□ -0.65
CMSS1-208ENST00000496116 DCUN1D1Q96GG9 259 aa11.01□□□□□ -0.65
CMSS1-208ENST00000496116 BIRC8Q96P09 236 aa11.01□□□□□ -0.65
CMSS1-208ENST00000496116 VN1R3Q9BXE9 311 aa11.01□□□□□ -0.65
CMSS1-208ENST00000496116 COPS7BQ9H9Q2 264 aaPredicted RBP11.01□□□□□ -0.65
CMSS1-208ENST00000496116 FBRSL1Q9HCM7 1045 aaKnown RBP11.01□□□□□ -0.65
CMSS1-208ENST00000496116 PFDN4Q9NQP4 134 aa11.01□□□□□ -0.65
CMSS1-208ENST00000496116 PKP3Q9Y446 797 aa11.01□□□□□ -0.65
CMSS1-208ENST00000496116 MICAL3Q7RTP6 2002 aa11□□□□□ -0.65
CMSS1-208ENST00000496116 A0A0J9YYE9 177 aa11□□□□□ -0.65
CMSS1-208ENST00000496116 PRSS51A0A1B0GVH4 220 aa11□□□□□ -0.65
CMSS1-208ENST00000496116 BTN3A1O00481 513 aa11□□□□□ -0.65
CMSS1-208ENST00000496116 TXNDC9O14530 226 aa11□□□□□ -0.65
CMSS1-208ENST00000496116 TRIM24O15164 1050 aa11□□□□□ -0.65
CMSS1-208ENST00000496116 SNX2O60749 519 aa11□□□□□ -0.65
CMSS1-208ENST00000496116 RNASEH1O60930 286 aaKnown RBP11□□□□□ -0.65
CMSS1-208ENST00000496116 MLYCDO95822 493 aa11□□□□□ -0.65
CMSS1-208ENST00000496116 CHEK2O96017 543 aa11□□□□□ -0.65
CMSS1-208ENST00000496116 RPS17P08708 135 aaKnown RBP11□□□□□ -0.65
CMSS1-208ENST00000496116 ALDOCP09972 364 aaKnown RBP11□□□□□ -0.65
CMSS1-208ENST00000496116 LBPP18428 481 aa11□□□□□ -0.65
CMSS1-208ENST00000496116 CHRM3P20309 590 aa11□□□□□ -0.65
CMSS1-208ENST00000496116 GPX3P22352 226 aa11□□□□□ -0.65
CMSS1-208ENST00000496116 PTGER3P43115 390 aa11□□□□□ -0.65
CMSS1-208ENST00000496116 ATXN3P54252 364 aaPredicted RBP11□□□□□ -0.65
CMSS1-208ENST00000496116 ADARP55265 1226 aaKnown RBP11□□□□□ -0.65
CMSS1-208ENST00000496116 IL2P60568 153 aa11□□□□□ -0.65
CMSS1-208ENST00000496116 RHOAP61586 193 aa11□□□□□ -0.65
CMSS1-208ENST00000496116 TRAF2Q12933 501 aa11□□□□□ -0.65
CMSS1-208ENST00000496116 RPS6KA2Q15349 733 aa11□□□□□ -0.65
CMSS1-208ENST00000496116 EML3Q32P44 896 aa11□□□□□ -0.65
CMSS1-208ENST00000496116 LINGO4Q6UY18 593 aa11□□□□□ -0.65
CMSS1-208ENST00000496116 DEFB128Q7Z7B8 93 aa11□□□□□ -0.65
CMSS1-208ENST00000496116 ST13P4Q8IZP2 240 aaPredicted RBP11□□□□□ -0.65
CMSS1-208ENST00000496116 HJURPQ8NCD3 748 aaPredicted RBP11□□□□□ -0.65
CMSS1-208ENST00000496116 FAM156AQ8NDB6 213 aa11□□□□□ -0.65
CMSS1-208ENST00000496116 OR9I1Q8NGQ6 314 aa11□□□□□ -0.65
CMSS1-208ENST00000496116 KCNJ9Q92806 393 aa11□□□□□ -0.65
CMSS1-208ENST00000496116 TBRG4Q969Z0 631 aaKnown RBP eCLIP11□□□□□ -0.65
CMSS1-208ENST00000496116 FUBP1Q96AE4 644 aaKnown RBP11□□□□□ -0.65
CMSS1-208ENST00000496116 TUBGCP3Q96CW5 907 aa11□□□□□ -0.65
CMSS1-208ENST00000496116 TMEM169Q96HH4 297 aa11□□□□□ -0.65
CMSS1-208ENST00000496116 NSUN5Q96P11 429 aaKnown RBP11□□□□□ -0.65
CMSS1-208ENST00000496116 TRAPPC9Q96Q05 1148 aa11□□□□□ -0.65
CMSS1-208ENST00000496116 TUBGCP5Q96RT8 1024 aa11□□□□□ -0.65
CMSS1-208ENST00000496116 ZBED2Q9BTP6 218 aa11□□□□□ -0.65
CMSS1-208ENST00000496116 C1QTNF3Q9BXJ4 246 aa11□□□□□ -0.65
CMSS1-208ENST00000496116 FAM192AQ9GZU8 254 aa11□□□□□ -0.65
CMSS1-208ENST00000496116 SEMA4BQ9NPR2 832 aaPredicted RBP11□□□□□ -0.65
CMSS1-208ENST00000496116 RIMS3Q9UJD0 308 aa11□□□□□ -0.65
CMSS1-208ENST00000496116 NDUFAF1Q9Y375 327 aa11□□□□□ -0.65
CMSS1-208ENST00000496116 NPEPPSL1A6NEC2 478 aa11□□□□□ -0.65
CMSS1-208ENST00000496116 CAPN8A6NHC0 703 aa11□□□□□ -0.65
CMSS1-208ENST00000496116 LRRC14BA6NHZ5 514 aa11□□□□□ -0.65
CMSS1-208ENST00000496116 CDC7O00311 574 aa11□□□□□ -0.65
CMSS1-208ENST00000496116 PPP6CO00743 305 aa11□□□□□ -0.65
CMSS1-208ENST00000496116 PRRG1O14668 218 aa11□□□□□ -0.65
CMSS1-208ENST00000496116 ANGPT2O15123 496 aa11□□□□□ -0.65
CMSS1-208ENST00000496116 KLK8O60259 260 aa11□□□□□ -0.65
CMSS1-208ENST00000496116 SNAP91O60641 907 aa11□□□□□ -0.65
CMSS1-208ENST00000496116 CD160O95971 181 aa11□□□□□ -0.65
CMSS1-208ENST00000496116 ESR1P03372 595 aa11□□□□□ -0.65
CMSS1-208ENST00000496116 HSPA8P11142 646 aaKnown RBP11□□□□□ -0.65
CMSS1-208ENST00000496116 IDO1P14902 403 aa11□□□□□ -0.65
CMSS1-208ENST00000496116 HDCP19113 662 aa11□□□□□ -0.65
CMSS1-208ENST00000496116 HSPA13P48723 471 aa11□□□□□ -0.65
CMSS1-208ENST00000496116 CDKN1CP49918 316 aaPredicted RBP11□□□□□ -0.65
CMSS1-208ENST00000496116 FOXA1P55317 472 aa11□□□□□ -0.65
CMSS1-208ENST00000496116 SMAD3P84022 425 aaKnown RBP11□□□□□ -0.65
CMSS1-208ENST00000496116 FOLH1Q04609 750 aa11□□□□□ -0.65
CMSS1-208ENST00000496116 CDH18Q13634 790 aa11□□□□□ -0.65
CMSS1-208ENST00000496116 IKBKEQ14164 716 aa11□□□□□ -0.65
CMSS1-208ENST00000496116 PRMT9Q6P2P2 845 aa11□□□□□ -0.65
CMSS1-208ENST00000496116 TAS2R42Q7RTR8 314 aa11□□□□□ -0.65
CMSS1-208ENST00000496116 PIANPQ8IYJ0 282 aa11□□□□□ -0.65
CMSS1-208ENST00000496116 KLHL32Q96NJ5 620 aa11□□□□□ -0.65
CMSS1-208ENST00000496116 GBP5Q96PP8 586 aa11□□□□□ -0.65
CMSS1-208ENST00000496116 CYP2S1Q96SQ9 504 aa11□□□□□ -0.65
CMSS1-208ENST00000496116 HOPXQ9BPY8 73 aaPredicted RBP11□□□□□ -0.65
CMSS1-208ENST00000496116 NUSAP1Q9BXS6 441 aaKnown RBP11□□□□□ -0.65
CMSS1-208ENST00000496116 YIPF3Q9GZM5 350 aa11□□□□□ -0.65
CMSS1-208ENST00000496116 BPIFA1Q9NP55 256 aa11□□□□□ -0.65
CMSS1-208ENST00000496116 SMPD4Q9NXE4 827 aa11□□□□□ -0.65
CMSS1-208ENST00000496116 TMEM181Q9P2C4 612 aa11□□□□□ -0.65
CMSS1-208ENST00000496116 RAB26Q9ULW5 256 aa11□□□□□ -0.65
CMSS1-208ENST00000496116 SLC30A1Q9Y6M5 507 aa11□□□□□ -0.65
CMSS1-208ENST00000496116 ANAPC1Q9H1A4 1944 aa11□□□□□ -0.65
CMSS1-208ENST00000496116 PRORSD1PA6NEY8 169 aa10.99□□□□□ -0.65
CMSS1-208ENST00000496116 NCF1BA6NI72 391 aaPredicted RBP10.99□□□□□ -0.65
CMSS1-208ENST00000496116 NCF1CA8MVU1 366 aaPredicted RBP10.99□□□□□ -0.65
CMSS1-208ENST00000496116 FKTNO75072 461 aa10.99□□□□□ -0.65
CMSS1-208ENST00000496116 NIPSNAP2O75323 286 aa10.99□□□□□ -0.65
CMSS1-208ENST00000496116 MATN4O95460 622 aa10.99□□□□□ -0.65
CMSS1-208ENST00000496116 C8BP07358 591 aa10.99□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms