RNA–Protein interactions for RNA: ENST00000493341.1

VPS13A-212, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2

Gene VPS13A, Length 2,001 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-212ENST00000493341 ARSGQ96EG1 525 aa4.67□□□□□ -1.66
VPS13A-212ENST00000493341 RITA1Q96K30 269 aa4.67□□□□□ -1.66
VPS13A-212ENST00000493341 TOX2Q96NM4 488 aa4.67□□□□□ -1.66
VPS13A-212ENST00000493341 ATP6V0BQ99437 205 aa4.67□□□□□ -1.66
VPS13A-212ENST00000493341 EGFL8Q99944 293 aa4.67□□□□□ -1.66
VPS13A-212ENST00000493341 EFHD1Q9BUP0 239 aa4.67□□□□□ -1.66
VPS13A-212ENST00000493341 ABHD6Q9BV23 337 aa4.67□□□□□ -1.66
VPS13A-212ENST00000493341 KATNB1Q9BVA0 655 aa4.67□□□□□ -1.66
VPS13A-212ENST00000493341 SIRT3Q9NTG7 399 aaPredicted RBP4.67□□□□□ -1.66
VPS13A-212ENST00000493341 ANKRD10Q9NXR5 420 aa4.67□□□□□ -1.66
VPS13A-212ENST00000493341 NFE2L3Q9Y4A8 694 aa4.67□□□□□ -1.66
VPS13A-212ENST00000493341 KRT87PA6NCN2 255 aa4.67□□□□□ -1.66
VPS13A-212ENST00000493341 CCDC69A6NI79 296 aa4.67□□□□□ -1.66
VPS13A-212ENST00000493341 ZNF202O95125 648 aa4.67□□□□□ -1.66
VPS13A-212ENST00000493341 ESRRBO95718 433 aa4.67□□□□□ -1.66
VPS13A-212ENST00000493341 WNT1P04628 370 aa4.67□□□□□ -1.66
VPS13A-212ENST00000493341 SIRPAP78324 504 aa4.67□□□□□ -1.66
VPS13A-212ENST00000493341 PPATQ06203 517 aa4.67□□□□□ -1.66
VPS13A-212ENST00000493341 ACSM1Q08AH1 577 aa4.67□□□□□ -1.66
VPS13A-212ENST00000493341 SREBF2Q12772 1141 aa4.67□□□□□ -1.66
VPS13A-212ENST00000493341 R3HDM1Q15032 1099 aaKnown RBP4.67□□□□□ -1.66
VPS13A-212ENST00000493341 CERKLQ49MI3 558 aaPredicted RBP4.67□□□□□ -1.66
VPS13A-212ENST00000493341 SLC39A12Q504Y0 691 aa4.67□□□□□ -1.66
VPS13A-212ENST00000493341 SETMARQ53H47 684 aaPredicted RBP4.67□□□□□ -1.66
VPS13A-212ENST00000493341 UBE2Q1Q7Z7E8 422 aa4.67□□□□□ -1.66
VPS13A-212ENST00000493341 CCDC190Q86UF4 302 aa4.67□□□□□ -1.66
VPS13A-212ENST00000493341 TMEM173Q86WV6 379 aaPredicted RBP4.67□□□□□ -1.66
VPS13A-212ENST00000493341 ZDHHC23Q8IYP9 409 aa4.67□□□□□ -1.66
VPS13A-212ENST00000493341 ARL6IP6Q8N6S5 226 aa4.67□□□□□ -1.66
VPS13A-212ENST00000493341 PNLDC1Q8NA58 520 aaKnown RBP4.67□□□□□ -1.66
VPS13A-212ENST00000493341 SCCPDHQ8NBX0 429 aa4.67□□□□□ -1.66
VPS13A-212ENST00000493341 GRAPLQ8TC17 118 aaPredicted RBP4.67□□□□□ -1.66
VPS13A-212ENST00000493341 ERGIC1Q969X5 290 aa4.67□□□□□ -1.66
VPS13A-212ENST00000493341 PDLIM5Q96HC4 596 aaKnown RBP4.67□□□□□ -1.66
VPS13A-212ENST00000493341 NEK1Q96PY6 1258 aa4.67□□□□□ -1.66
VPS13A-212ENST00000493341 PARK7Q99497 189 aaKnown RBP4.67□□□□□ -1.66
VPS13A-212ENST00000493341 PIMREGQ9BSJ6 248 aa4.67□□□□□ -1.66
VPS13A-212ENST00000493341 UTP14AQ9BVJ6 771 aaKnown RBP4.67□□□□□ -1.66
VPS13A-212ENST00000493341 NPFFR1Q9GZQ6 430 aa4.67□□□□□ -1.66
VPS13A-212ENST00000493341 TNMDQ9H2S6 317 aa4.67□□□□□ -1.66
VPS13A-212ENST00000493341 HINT3Q9NQE9 182 aaKnown RBP4.67□□□□□ -1.66
VPS13A-212ENST00000493341 CYSLTR2Q9NS75 346 aa4.67□□□□□ -1.66
VPS13A-212ENST00000493341 PRMT7Q9NVM4 692 aaPredicted RBP4.67□□□□□ -1.66
VPS13A-212ENST00000493341 RCOR1Q9UKL0 485 aa4.67□□□□□ -1.66
VPS13A-212ENST00000493341 AGTPBP1Q9UPW5 1226 aa4.67□□□□□ -1.66
VPS13A-212ENST00000493341 MTF2Q9Y483 593 aaPredicted RBP4.67□□□□□ -1.66
VPS13A-212ENST00000493341 RNF114Q9Y508 228 aa4.67□□□□□ -1.66
VPS13A-212ENST00000493341 A0A1W2PPM1 405 aa4.66□□□□□ -1.66
VPS13A-212ENST00000493341 SMIM30A4D0T7 59 aa4.66□□□□□ -1.66
VPS13A-212ENST00000493341 TARM1B6A8C7 271 aa4.66□□□□□ -1.66
VPS13A-212ENST00000493341 SMAD9O15198 467 aaKnown RBP4.66□□□□□ -1.66
VPS13A-212ENST00000493341 OLFM2O95897 454 aa4.66□□□□□ -1.66
VPS13A-212ENST00000493341 INHBAP08476 426 aa4.66□□□□□ -1.66
VPS13A-212ENST00000493341 CHRM5P08912 532 aaPredicted RBP4.66□□□□□ -1.66
VPS13A-212ENST00000493341 LINGO3P0C6S8 592 aa4.66□□□□□ -1.66
VPS13A-212ENST00000493341 MAPK3P27361 379 aaPredicted RBP4.66□□□□□ -1.66
VPS13A-212ENST00000493341 NMBRP28336 390 aa4.66□□□□□ -1.66
VPS13A-212ENST00000493341 KIF5BP33176 963 aa4.66□□□□□ -1.66
VPS13A-212ENST00000493341 ADRA1BP35368 520 aa4.66□□□□□ -1.66
VPS13A-212ENST00000493341 PLA2G5P39877 138 aa4.66□□□□□ -1.66
VPS13A-212ENST00000493341 AVPR1BP47901 424 aa4.66□□□□□ -1.66
VPS13A-212ENST00000493341 FOXI1Q12951 378 aa4.66□□□□□ -1.66
VPS13A-212ENST00000493341 LPIN1Q14693 890 aa4.66□□□□□ -1.66
VPS13A-212ENST00000493341 VWC2Q2TAL6 325 aa4.66□□□□□ -1.66
VPS13A-212ENST00000493341 C6orf136Q5SQH8 315 aa4.66□□□□□ -1.66
VPS13A-212ENST00000493341 TMEM270Q6UE05 265 aa4.66□□□□□ -1.66
VPS13A-212ENST00000493341 C11orf57Q6ZUT1 292 aaPredicted RBP4.66□□□□□ -1.66
VPS13A-212ENST00000493341 AMIGO2Q86SJ2 522 aa4.66□□□□□ -1.66
VPS13A-212ENST00000493341 SLC9B2Q86UD5 537 aa4.66□□□□□ -1.66
VPS13A-212ENST00000493341 CHSY1Q86X52 802 aa4.66□□□□□ -1.66
VPS13A-212ENST00000493341 GALNT16Q8N428 558 aa4.66□□□□□ -1.66
VPS13A-212ENST00000493341 HM13Q8TCT9 377 aa4.66□□□□□ -1.66
VPS13A-212ENST00000493341 EXT2Q93063 718 aa4.66□□□□□ -1.66
VPS13A-212ENST00000493341 OTULINQ96BN8 352 aa4.66□□□□□ -1.66
VPS13A-212ENST00000493341 ABCG4Q9H172 646 aa4.66□□□□□ -1.66
VPS13A-212ENST00000493341 PNRC2Q9NPJ4 139 aaKnown RBP4.66□□□□□ -1.66
VPS13A-212ENST00000493341 IL17RBQ9NRM6 502 aa4.66□□□□□ -1.66
VPS13A-212ENST00000493341 ACSS1Q9NUB1 689 aaPredicted RBP4.66□□□□□ -1.66
VPS13A-212ENST00000493341 SLC9A2Q9UBY0 812 aa4.66□□□□□ -1.66
VPS13A-212ENST00000493341 DBNLQ9UJU6 430 aaKnown RBP4.66□□□□□ -1.66
VPS13A-212ENST00000493341 CDH7Q9ULB5 785 aa4.66□□□□□ -1.66
VPS13A-212ENST00000493341 EPN1Q9Y6I3 576 aaPredicted RBP4.66□□□□□ -1.66
VPS13A-212ENST00000493341 FAM86B1E9PN63 330 aa4.65□□□□□ -1.66
VPS13A-212ENST00000493341 CCDC188H7C350 402 aa4.65□□□□□ -1.66
VPS13A-212ENST00000493341 SLC33A1O00400 549 aaPredicted RBP4.65□□□□□ -1.66
VPS13A-212ENST00000493341 IFIT3O14879 490 aaKnown RBP4.65□□□□□ -1.66
VPS13A-212ENST00000493341 KLKB1P03952 638 aa4.65□□□□□ -1.66
VPS13A-212ENST00000493341 CYC1P08574 325 aa4.65□□□□□ -1.66
VPS13A-212ENST00000493341 VIMP08670 466 aaKnown RBP4.65□□□□□ -1.66
VPS13A-212ENST00000493341 FAM86B2P0C5J1 330 aa4.65□□□□□ -1.66
VPS13A-212ENST00000493341 CYP2A6P11509 494 aaPredicted RBP4.65□□□□□ -1.66
VPS13A-212ENST00000493341 AZGP1P25311 298 aaKnown RBP4.65□□□□□ -1.66
VPS13A-212ENST00000493341 TNFRSF8P28908 595 aa4.65□□□□□ -1.66
VPS13A-212ENST00000493341 EIF2S3P41091 472 aaKnown RBP4.65□□□□□ -1.66
VPS13A-212ENST00000493341 NT5C2P49902 561 aa4.65□□□□□ -1.66
VPS13A-212ENST00000493341 EVCP57679 992 aa4.65□□□□□ -1.66
VPS13A-212ENST00000493341 POLR2FP61218 127 aaKnown RBP4.65□□□□□ -1.66
VPS13A-212ENST00000493341 SPOCK1Q08629 439 aa4.65□□□□□ -1.66
VPS13A-212ENST00000493341 PTPRCAPQ14761 206 aa4.65□□□□□ -1.66
VPS13A-212ENST00000493341 KCNT1Q5JUK3 1230 aa4.65□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 51.9 ms