RNA–Protein interactions for RNA: ENST00000492506.1

HDAC3-213, Transcript of histone deacetylase 3, humanhuman

TSL 2

Gene HDAC3, Length 830 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-213ENST00000492506 NUDT22Q9BRQ3 303 aa13.14□□□□□ -0.31
HDAC3-213ENST00000492506 CDH19Q9H159 772 aa13.14□□□□□ -0.31
HDAC3-213ENST00000492506 LHX3Q9UBR4 397 aa13.14□□□□□ -0.31
HDAC3-213ENST00000492506 ANAPC2Q9UJX6 822 aa13.14□□□□□ -0.31
HDAC3-213ENST00000492506 SNX12Q9UMY4 172 aa13.14□□□□□ -0.31
HDAC3-213ENST00000492506 CENPEQ02224 2701 aa13.13□□□□□ -0.31
HDAC3-213ENST00000492506 IGHV5-10-1A0A0J9YXX1 117 aa13.13□□□□□ -0.31
HDAC3-213ENST00000492506 GRID2IPA4D2P6 1211 aa13.13□□□□□ -0.31
HDAC3-213ENST00000492506 CCT8L1PA6NM43 557 aa13.13□□□□□ -0.31
HDAC3-213ENST00000492506 B4DGG1 531 aa13.13□□□□□ -0.31
HDAC3-213ENST00000492506 HGSO14964 777 aaPredicted RBP13.13□□□□□ -0.31
HDAC3-213ENST00000492506 CYP11B1P15538 503 aa13.13□□□□□ -0.31
HDAC3-213ENST00000492506 GM2AP17900 193 aa13.13□□□□□ -0.31
HDAC3-213ENST00000492506 UGT1A3P35503 534 aa13.13□□□□□ -0.31
HDAC3-213ENST00000492506 OR1D5P58170 312 aa13.13□□□□□ -0.31
HDAC3-213ENST00000492506 RHOAP61586 193 aa13.13□□□□□ -0.31
HDAC3-213ENST00000492506 TMED1Q13445 227 aa13.13□□□□□ -0.31
HDAC3-213ENST00000492506 SERINC3Q13530 473 aa13.13□□□□□ -0.31
HDAC3-213ENST00000492506 NR1D2Q14995 579 aa13.13□□□□□ -0.31
HDAC3-213ENST00000492506 CYTH1Q15438 398 aa13.13□□□□□ -0.31
HDAC3-213ENST00000492506 C15orf59Q2T9L4 293 aaPredicted RBP13.13□□□□□ -0.31
HDAC3-213ENST00000492506 C8orf74Q6P047 294 aa13.13□□□□□ -0.31
HDAC3-213ENST00000492506 PIM3Q86V86 326 aa13.13□□□□□ -0.31
HDAC3-213ENST00000492506 CASKIN2Q8WXE0 1202 aa13.13□□□□□ -0.31
HDAC3-213ENST00000492506 EXOC2Q96KP1 924 aa13.13□□□□□ -0.31
HDAC3-213ENST00000492506 TAAR9Q96RI9 348 aa13.13□□□□□ -0.31
HDAC3-213ENST00000492506 CCDC28BQ9BUN5 200 aa13.13□□□□□ -0.31
HDAC3-213ENST00000492506 VCXQ9H320 206 aa13.13□□□□□ -0.31
HDAC3-213ENST00000492506 DPEP2Q9H4A9 486 aa13.13□□□□□ -0.31
HDAC3-213ENST00000492506 SUV39H2Q9H5I1 410 aa13.13□□□□□ -0.31
HDAC3-213ENST00000492506 TMBIM4Q9HC24 238 aa13.13□□□□□ -0.31
HDAC3-213ENST00000492506 BAIAP2L1Q9UHR4 511 aa13.13□□□□□ -0.31
HDAC3-213ENST00000492506 GUCA1BQ9UMX6 200 aa13.13□□□□□ -0.31
HDAC3-213ENST00000492506 DAAM1Q9Y4D1 1078 aa13.13□□□□□ -0.31
HDAC3-213ENST00000492506 ENO4A6NNW6 628 aa13.12□□□□□ -0.31
HDAC3-213ENST00000492506 TNFRSF10CO14798 259 aa13.12□□□□□ -0.31
HDAC3-213ENST00000492506 ANP32DO95626 131 aa13.12□□□□□ -0.31
HDAC3-213ENST00000492506 ATP1A1P05023 1023 aaKnown RBP13.12□□□□□ -0.31
HDAC3-213ENST00000492506 PRKCGP05129 697 aa13.12□□□□□ -0.31
HDAC3-213ENST00000492506 PLEKP08567 350 aaPredicted RBP13.12□□□□□ -0.31
HDAC3-213ENST00000492506 RPSAP08865 295 aaKnown RBP13.12□□□□□ -0.31
HDAC3-213ENST00000492506 HOXC4P09017 264 aaPredicted RBP13.12□□□□□ -0.31
HDAC3-213ENST00000492506 GSTA2P09210 222 aa13.12□□□□□ -0.31
HDAC3-213ENST00000492506 MYZAPP0CAP1 466 aa13.12□□□□□ -0.31
HDAC3-213ENST00000492506 CD1CP29017 333 aa13.12□□□□□ -0.31
HDAC3-213ENST00000492506 TRIM23P36406 574 aa13.12□□□□□ -0.31
HDAC3-213ENST00000492506 HSPA9P38646 679 aaKnown RBP13.12□□□□□ -0.31
HDAC3-213ENST00000492506 PEX19P40855 299 aa13.12□□□□□ -0.31
HDAC3-213ENST00000492506 CCR10P46092 362 aa13.12□□□□□ -0.31
HDAC3-213ENST00000492506 ATP1A2P50993 1020 aa13.12□□□□□ -0.31
HDAC3-213ENST00000492506 MAZP56270 477 aaKnown RBP13.12□□□□□ -0.31
HDAC3-213ENST00000492506 BPIFB4P59827 614 aa13.12□□□□□ -0.31
HDAC3-213ENST00000492506 RALGDSQ12967 914 aa13.12□□□□□ -0.31
HDAC3-213ENST00000492506 CLPPQ16740 277 aaPredicted RBP13.12□□□□□ -0.31
HDAC3-213ENST00000492506 CCDC14Q49A88 953 aa13.12□□□□□ -0.31
HDAC3-213ENST00000492506 TRIM74Q86UV6 250 aa13.12□□□□□ -0.31
HDAC3-213ENST00000492506 TRIM73Q86UV7 250 aa13.12□□□□□ -0.31
HDAC3-213ENST00000492506 NRROSQ86YC3 692 aa13.12□□□□□ -0.31
HDAC3-213ENST00000492506 PELI3Q8N2H9 469 aa13.12□□□□□ -0.31
HDAC3-213ENST00000492506 CCDC185Q8N715 623 aa13.12□□□□□ -0.31
HDAC3-213ENST00000492506 B4GALNT2Q8NHY0 566 aa13.12□□□□□ -0.31
HDAC3-213ENST00000492506 GPBAR1Q8TDU6 330 aa13.12□□□□□ -0.31
HDAC3-213ENST00000492506 CENPIQ92674 756 aaPredicted RBP13.12□□□□□ -0.31
HDAC3-213ENST00000492506 PPP1R14BQ96C90 147 aa13.12□□□□□ -0.31
HDAC3-213ENST00000492506 DNAJC7Q99615 494 aa13.12□□□□□ -0.31
HDAC3-213ENST00000492506 LGR4Q9BXB1 951 aa13.12□□□□□ -0.31
HDAC3-213ENST00000492506 METTL5Q9NRN9 209 aaKnown RBP13.12□□□□□ -0.31
HDAC3-213ENST00000492506 SLC12A4Q9UP95 1085 aa13.12□□□□□ -0.31
HDAC3-213ENST00000492506 B3GALT1Q9Y5Z6 326 aa13.12□□□□□ -0.31
HDAC3-213ENST00000492506 RPS6KL1Q9Y6S9 549 aa13.12□□□□□ -0.31
HDAC3-213ENST00000492506 CFAP69A5D8W1 941 aa13.11□□□□□ -0.31
HDAC3-213ENST00000492506 FGFR1OPO95684 399 aaKnown RBP13.11□□□□□ -0.31
HDAC3-213ENST00000492506 LSM8O95777 96 aaKnown RBP13.11□□□□□ -0.31
HDAC3-213ENST00000492506 FUCA1P04066 466 aa13.11□□□□□ -0.31
HDAC3-213ENST00000492506 FGF1P05230 155 aa13.11□□□□□ -0.31
HDAC3-213ENST00000492506 XPAP23025 273 aaPredicted RBP13.11□□□□□ -0.31
HDAC3-213ENST00000492506 ALDH3A1P30838 453 aa13.11□□□□□ -0.31
HDAC3-213ENST00000492506 LIMK2P53671 638 aa13.11□□□□□ -0.31
HDAC3-213ENST00000492506 HDAC4P56524 1084 aa13.11□□□□□ -0.31
HDAC3-213ENST00000492506 NOMO3P69849 1222 aa13.11□□□□□ -0.31
HDAC3-213ENST00000492506 KIF5AQ12840 1032 aa13.11□□□□□ -0.31
HDAC3-213ENST00000492506 CDO1Q16878 200 aa13.11□□□□□ -0.31
HDAC3-213ENST00000492506 AMZ1Q400G9 498 aa13.11□□□□□ -0.31
HDAC3-213ENST00000492506 MAATS1Q7Z4T9 603 aa13.11□□□□□ -0.31
HDAC3-213ENST00000492506 NOP9Q86U38 636 aaKnown RBP13.11□□□□□ -0.31
HDAC3-213ENST00000492506 FAM26EQ8N5C1 309 aa13.11□□□□□ -0.31
HDAC3-213ENST00000492506 IL22RA1Q8N6P7 574 aa13.11□□□□□ -0.31
HDAC3-213ENST00000492506 RTL3Q8N8U3 475 aaKnown RBP13.11□□□□□ -0.31
HDAC3-213ENST00000492506 RXFP2Q8WXD0 754 aa13.11□□□□□ -0.31
HDAC3-213ENST00000492506 CPA5Q8WXQ8 436 aa13.11□□□□□ -0.31
HDAC3-213ENST00000492506 CCDC74BQ96LY2 380 aa13.11□□□□□ -0.31
HDAC3-213ENST00000492506 ZNF641Q96N77 438 aaPredicted RBP13.11□□□□□ -0.31
HDAC3-213ENST00000492506 GORASP1Q9BQQ3 440 aa13.11□□□□□ -0.31
HDAC3-213ENST00000492506 DDA1Q9BW61 102 aa13.11□□□□□ -0.31
HDAC3-213ENST00000492506 SPRY4Q9C004 299 aa13.11□□□□□ -0.31
HDAC3-213ENST00000492506 NDST4Q9H3R1 872 aa13.11□□□□□ -0.31
HDAC3-213ENST00000492506 CYP4F12Q9HCS2 524 aa13.11□□□□□ -0.31
HDAC3-213ENST00000492506 ZNF71Q9NQZ8 489 aaPredicted RBP13.11□□□□□ -0.31
HDAC3-213ENST00000492506 AKAP7Q9P0M2 348 aaPredicted RBP13.11□□□□□ -0.31
HDAC3-213ENST00000492506 ATP8A1Q9Y2Q0 1164 aa13.11□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 48.8 ms