RNA–Protein interactions for RNA: ENST00000490788.1

HMGB1-208, Transcript of high mobility group box 1, humanhuman

TSL 2

Gene HMGB1, Length 425 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-208ENST00000490788 ZNF766Q5HY98 468 aa2.21□□□□□ -2.06
HMGB1-208ENST00000490788 GORABQ5T7V8 394 aa2.21□□□□□ -2.06
HMGB1-208ENST00000490788 FAM122CQ6P4D5 195 aa2.21□□□□□ -2.06
HMGB1-208ENST00000490788 TMEM81Q6P7N7 255 aa2.21□□□□□ -2.06
HMGB1-208ENST00000490788 RHBDF2Q6PJF5 856 aa2.21□□□□□ -2.06
HMGB1-208ENST00000490788 C17orf99Q6UX52 265 aa2.21□□□□□ -2.06
HMGB1-208ENST00000490788 CYP26C1Q6V0L0 522 aa2.21□□□□□ -2.06
HMGB1-208ENST00000490788 GSTA5Q7RTV2 222 aa2.21□□□□□ -2.06
HMGB1-208ENST00000490788 C16orf82Q7Z2V1 217 aa2.21□□□□□ -2.06
HMGB1-208ENST00000490788 MTERF4Q7Z6M4 381 aaKnown RBP2.21□□□□□ -2.06
HMGB1-208ENST00000490788 EXOC3L1Q86VI1 746 aa2.21□□□□□ -2.06
HMGB1-208ENST00000490788 ZC3HC1Q86WB0 502 aaKnown RBP2.21□□□□□ -2.06
HMGB1-208ENST00000490788 CPOQ8IVL8 374 aa2.21□□□□□ -2.06
HMGB1-208ENST00000490788 KCNH5Q8NCM2 988 aa2.21□□□□□ -2.06
HMGB1-208ENST00000490788 ARRDC2Q8TBH0 407 aa2.21□□□□□ -2.06
HMGB1-208ENST00000490788 CD99L2Q8TCZ2 262 aa2.21□□□□□ -2.06
HMGB1-208ENST00000490788 HERVK_113Q902F9 699 aa2.21□□□□□ -2.06
HMGB1-208ENST00000490788 ZKSCAN4Q969J2 545 aaPredicted RBP2.21□□□□□ -2.06
HMGB1-208ENST00000490788 FBXL8Q96CD0 374 aa2.21□□□□□ -2.06
HMGB1-208ENST00000490788 HVCN1Q96D96 273 aa2.21□□□□□ -2.06
HMGB1-208ENST00000490788 APOPT1Q96IL0 206 aa2.21□□□□□ -2.06
HMGB1-208ENST00000490788 MYCBPQ99417 103 aaPredicted RBP2.21□□□□□ -2.06
HMGB1-208ENST00000490788 MXRA8Q9BRK3 442 aa2.21□□□□□ -2.06
HMGB1-208ENST00000490788 CCDC94Q9BW85 323 aaPredicted RBP2.21□□□□□ -2.06
HMGB1-208ENST00000490788 C1QTNF4Q9BXJ3 329 aa2.21□□□□□ -2.06
HMGB1-208ENST00000490788 TXLNGQ9NUQ3 528 aa2.21□□□□□ -2.06
HMGB1-208ENST00000490788 CISD1Q9NZ45 108 aaKnown RBP2.21□□□□□ -2.06
HMGB1-208ENST00000490788 LUZP4Q9P127 313 aa2.21□□□□□ -2.06
HMGB1-208ENST00000490788 ARHGAP26Q9UNA1 814 aa2.21□□□□□ -2.06
HMGB1-208ENST00000490788 CDC14AQ9UNH5 594 aa2.21□□□□□ -2.06
HMGB1-208ENST00000490788 PCDHAC2Q9Y5I4 1007 aa2.21□□□□□ -2.06
HMGB1-208ENST00000490788 A3GALT2U3KPV4 340 aa2.21□□□□□ -2.06
HMGB1-208ENST00000490788 PALLDQ8WX93 1383 aa2.21□□□□□ -2.06
HMGB1-208ENST00000490788 KIAA0100Q14667 2235 aaKnown RBP2.21□□□□□ -2.06
HMGB1-208ENST00000490788 ADGRF5Q8IZF2 1346 aa2.2□□□□□ -2.06
HMGB1-208ENST00000490788 MON2Q7Z3U7 1717 aa2.2□□□□□ -2.06
HMGB1-208ENST00000490788 IFT172Q9UG01 1749 aa2.2□□□□□ -2.06
HMGB1-208ENST00000490788 LRRC53A6NM62 1247 aa2.2□□□□□ -2.06
HMGB1-208ENST00000490788 CYSRT1A8MQ03 144 aa2.2□□□□□ -2.06
HMGB1-208ENST00000490788 SMTNL1A8MU46 457 aa2.2□□□□□ -2.06
HMGB1-208ENST00000490788 CCER2I3L3R5 266 aa2.2□□□□□ -2.06
HMGB1-208ENST00000490788 SLC16A5O15375 505 aa2.2□□□□□ -2.06
HMGB1-208ENST00000490788 TACC1O75410 805 aa2.2□□□□□ -2.06
HMGB1-208ENST00000490788 URODP06132 367 aa2.2□□□□□ -2.06
HMGB1-208ENST00000490788 POLBP06746 335 aa2.2□□□□□ -2.06
HMGB1-208ENST00000490788 HNRNPA1P09651 372 aaKnown RBP eCLIP2.2□□□□□ -2.06
HMGB1-208ENST00000490788 ETFAP13804 333 aa2.2□□□□□ -2.06
HMGB1-208ENST00000490788 COX7A2P14406 83 aa2.2□□□□□ -2.06
HMGB1-208ENST00000490788 CAPN2P17655 700 aa2.2□□□□□ -2.06
HMGB1-208ENST00000490788 GGT5P36269 586 aa2.2□□□□□ -2.06
HMGB1-208ENST00000490788 PIGAP37287 484 aa2.2□□□□□ -2.06
HMGB1-208ENST00000490788 IL15P40933 162 aaPredicted RBP2.2□□□□□ -2.06
HMGB1-208ENST00000490788 PDLIM4P50479 330 aa2.2□□□□□ -2.06
HMGB1-208ENST00000490788 GTF2A1P52655 376 aaPredicted RBP2.2□□□□□ -2.06
HMGB1-208ENST00000490788 UFM1P61960 85 aa2.2□□□□□ -2.06
HMGB1-208ENST00000490788 EEF1A2Q05639 463 aaKnown RBP2.2□□□□□ -2.06
HMGB1-208ENST00000490788 NEXNQ0ZGT2 675 aa2.2□□□□□ -2.06
HMGB1-208ENST00000490788 SREBF2Q12772 1141 aa2.2□□□□□ -2.06
HMGB1-208ENST00000490788 KIF5AQ12840 1032 aa2.2□□□□□ -2.06
HMGB1-208ENST00000490788 COASYQ13057 564 aa2.2□□□□□ -2.06
HMGB1-208ENST00000490788 DHX34Q14147 1143 aaKnown RBP2.2□□□□□ -2.06
HMGB1-208ENST00000490788 ZKSCAN8Q15776 578 aaPredicted RBP2.2□□□□□ -2.06
HMGB1-208ENST00000490788 DNAJC21Q5F1R6 531 aaKnown RBP2.2□□□□□ -2.06
HMGB1-208ENST00000490788 ZNF667Q5HYK9 610 aa2.2□□□□□ -2.06
HMGB1-208ENST00000490788 LRRC8EQ6NSJ5 796 aa2.2□□□□□ -2.06
HMGB1-208ENST00000490788 PRSS57Q6UWY2 283 aa2.2□□□□□ -2.06
HMGB1-208ENST00000490788 KRBA2Q6ZNG9 492 aa2.2□□□□□ -2.06
HMGB1-208ENST00000490788 CCDC129Q6ZRS4 1044 aa2.2□□□□□ -2.06
HMGB1-208ENST00000490788 GET4Q7L5D6 327 aaPredicted RBP2.2□□□□□ -2.06
HMGB1-208ENST00000490788 ANKRD23Q86SG2 305 aa2.2□□□□□ -2.06
HMGB1-208ENST00000490788 PGBD5Q8N414 524 aa2.2□□□□□ -2.06
HMGB1-208ENST00000490788 AGBL3Q8NEM8 1001 aa2.2□□□□□ -2.06
HMGB1-208ENST00000490788 BEST2Q8NFU1 509 aa2.2□□□□□ -2.06
HMGB1-208ENST00000490788 LILRB1Q8NHL6 650 aaPredicted RBP2.2□□□□□ -2.06
HMGB1-208ENST00000490788 SPATA3Q8NHX4 192 aa2.2□□□□□ -2.06
HMGB1-208ENST00000490788 SPATA18Q8TC71 538 aa2.2□□□□□ -2.06
HMGB1-208ENST00000490788 ERGIC1Q969X5 290 aa2.2□□□□□ -2.06
HMGB1-208ENST00000490788 EVI5LQ96CN4 794 aa2.2□□□□□ -2.06
HMGB1-208ENST00000490788 ELP4Q96EB1 424 aa2.2□□□□□ -2.06
HMGB1-208ENST00000490788 ZNF385AQ96PM9 386 aaKnown RBP2.2□□□□□ -2.06
HMGB1-208ENST00000490788 TSPAN18Q96SJ8 248 aa2.2□□□□□ -2.06
HMGB1-208ENST00000490788 MPHOSPH8Q99549 860 aa2.2□□□□□ -2.06
HMGB1-208ENST00000490788 CLSTN3Q9BQT9 956 aa2.2□□□□□ -2.06
HMGB1-208ENST00000490788 H2AFJQ9BTM1 129 aa2.2□□□□□ -2.06
HMGB1-208ENST00000490788 PHF7Q9BWX1 381 aaPredicted RBP2.2□□□□□ -2.06
HMGB1-208ENST00000490788 TTYH1Q9H313 450 aaPredicted RBP2.2□□□□□ -2.06
HMGB1-208ENST00000490788 MAGEE1Q9HCI5 957 aa2.2□□□□□ -2.06
HMGB1-208ENST00000490788 SMC4Q9NTJ3 1288 aa2.2□□□□□ -2.06
HMGB1-208ENST00000490788 RBM28Q9NW13 759 aaKnown RBP2.2□□□□□ -2.06
HMGB1-208ENST00000490788 MPP6Q9NZW5 540 aa2.2□□□□□ -2.06
HMGB1-208ENST00000490788 SLC13A4Q9UKG4 626 aa2.2□□□□□ -2.06
HMGB1-208ENST00000490788 RCOR1Q9UKL0 485 aa2.2□□□□□ -2.06
HMGB1-208ENST00000490788 VDAC3Q9Y277 283 aa2.2□□□□□ -2.06
HMGB1-208ENST00000490788 RANBP2P49792 3224 aaKnown RBP2.2□□□□□ -2.06
HMGB1-208ENST00000490788 INSRP06213 1382 aa2.2□□□□□ -2.06
HMGB1-208ENST00000490788 BRCA2P51587 3418 aa2.2□□□□□ -2.06
HMGB1-208ENST00000490788 BDP1A6H8Y1 2624 aa2.2□□□□□ -2.06
HMGB1-208ENST00000490788 KMT2BQ9UMN6 2715 aaPredicted RBP2.19□□□□□ -2.06
HMGB1-208ENST00000490788 DICER1Q9UPY3 1922 aaKnown RBP2.19□□□□□ -2.06
HMGB1-208ENST00000490788 ZNF609O15014 1411 aa2.19□□□□□ -2.06
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms