RNA–Protein interactions for RNA: ENST00000490193.5

USP39-216, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 5

Gene USP39, Length 1,028 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-216ENST00000490193 RAVER1Q8IY67 606 aaKnown RBP8.13□□□□□ -1.11
USP39-216ENST00000490193 LZTR1Q8N653 840 aa8.13□□□□□ -1.11
USP39-216ENST00000490193 MGME1Q9BQP7 344 aa8.13□□□□□ -1.11
USP39-216ENST00000490193 SNRNP25Q9BV90 132 aaKnown RBP8.13□□□□□ -1.11
USP39-216ENST00000490193 LDHAL6BQ9BYZ2 381 aaPredicted RBP8.13□□□□□ -1.11
USP39-216ENST00000490193 ZMYND15Q9H091 742 aa8.13□□□□□ -1.11
USP39-216ENST00000490193 ABCG8Q9H221 673 aa8.13□□□□□ -1.11
USP39-216ENST00000490193 STN1Q9H668 368 aaKnown RBP8.13□□□□□ -1.11
USP39-216ENST00000490193 CUEDC1Q9NWM3 386 aaPredicted RBP8.13□□□□□ -1.11
USP39-216ENST00000490193 GPATCH2LQ9NWQ4 482 aa8.13□□□□□ -1.11
USP39-216ENST00000490193 VPS18Q9P253 973 aa8.13□□□□□ -1.11
USP39-216ENST00000490193 VPS4AQ9UN37 437 aa8.13□□□□□ -1.11
USP39-216ENST00000490193 POLHQ9Y253 713 aa8.13□□□□□ -1.11
USP39-216ENST00000490193 PCDHGA6Q9Y5G7 932 aa8.13□□□□□ -1.11
USP39-216ENST00000490193 MRPS18BQ9Y676 258 aaKnown RBP8.13□□□□□ -1.11
USP39-216ENST00000490193 DOPEY1Q5JWR5 2465 aa8.12□□□□□ -1.11
USP39-216ENST00000490193 TNRC6AQ8NDV7 1962 aaKnown RBP8.12□□□□□ -1.11
USP39-216ENST00000490193 KIR2DS5A0A0G2JLQ3 304 aa8.12□□□□□ -1.11
USP39-216ENST00000490193 A0A0G2JNG1 304 aa8.12□□□□□ -1.11
USP39-216ENST00000490193 A8MU76 341 aa8.12□□□□□ -1.11
USP39-216ENST00000490193 KIR2DS3K7RE56 304 aa8.12□□□□□ -1.11
USP39-216ENST00000490193 DFFAO00273 331 aa8.12□□□□□ -1.11
USP39-216ENST00000490193 PES1O00541 588 aaKnown RBP8.12□□□□□ -1.11
USP39-216ENST00000490193 EPHB6O15197 1021 aa8.12□□□□□ -1.11
USP39-216ENST00000490193 TOX3O15405 576 aaPredicted RBP8.12□□□□□ -1.11
USP39-216ENST00000490193 ST8SIA5O15466 376 aa8.12□□□□□ -1.11
USP39-216ENST00000490193 FZD6O60353 706 aa8.12□□□□□ -1.11
USP39-216ENST00000490193 DNAJC6O75061 913 aa8.12□□□□□ -1.11
USP39-216ENST00000490193 AGFG2O95081 481 aa8.12□□□□□ -1.11
USP39-216ENST00000490193 PGLSO95336 258 aa8.12□□□□□ -1.11
USP39-216ENST00000490193 AVPP01185 164 aa8.12□□□□□ -1.11
USP39-216ENST00000490193 SLC2A4P14672 509 aa8.12□□□□□ -1.11
USP39-216ENST00000490193 ZNF30P17039 623 aa8.12□□□□□ -1.11
USP39-216ENST00000490193 DLSTP36957 453 aa8.12□□□□□ -1.11
USP39-216ENST00000490193 NOP2P46087 812 aaKnown RBP8.12□□□□□ -1.11
USP39-216ENST00000490193 UQCRFS1P47985 274 aa8.12□□□□□ -1.11
USP39-216ENST00000490193 DPYSQ14117 519 aa8.12□□□□□ -1.11
USP39-216ENST00000490193 ZNF235Q14590 738 aa8.12□□□□□ -1.11
USP39-216ENST00000490193 KIR2DS5Q14953 304 aa8.12□□□□□ -1.11
USP39-216ENST00000490193 CAMK4Q16566 473 aa8.12□□□□□ -1.11
USP39-216ENST00000490193 DPCR1Q3MIW9 517 aa8.12□□□□□ -1.11
USP39-216ENST00000490193 HSP90AA4PQ58FG1 418 aa8.12□□□□□ -1.11
USP39-216ENST00000490193 SNAP47Q5SQN1 464 aa8.12□□□□□ -1.11
USP39-216ENST00000490193 ERMARDQ5T6L9 678 aa8.12□□□□□ -1.11
USP39-216ENST00000490193 FHL5Q5TD97 284 aa8.12□□□□□ -1.11
USP39-216ENST00000490193 DENND2CQ68D51 928 aa8.12□□□□□ -1.11
USP39-216ENST00000490193 DOK6Q6PKX4 331 aa8.12□□□□□ -1.11
USP39-216ENST00000490193 C6orf15Q6UXA7 325 aaPredicted RBP8.12□□□□□ -1.11
USP39-216ENST00000490193 CYP4V2Q6ZWL3 525 aaPredicted RBP8.12□□□□□ -1.11
USP39-216ENST00000490193 LYSMD3Q7Z3D4 306 aa8.12□□□□□ -1.11
USP39-216ENST00000490193 TSPAN33Q86UF1 283 aa8.12□□□□□ -1.11
USP39-216ENST00000490193 PLXDC1Q8IUK5 500 aa8.12□□□□□ -1.11
USP39-216ENST00000490193 PGBD5Q8N414 524 aa8.12□□□□□ -1.11
USP39-216ENST00000490193 ARFGAP1Q8N6T3 406 aa8.12□□□□□ -1.11
USP39-216ENST00000490193 AVL9Q8NBF6 648 aa8.12□□□□□ -1.11
USP39-216ENST00000490193 SSC4DQ8WTU2 575 aa8.12□□□□□ -1.11
USP39-216ENST00000490193 PDCD6IPQ8WUM4 868 aaKnown RBP8.12□□□□□ -1.11
USP39-216ENST00000490193 PIH1D2Q8WWB5 315 aa8.12□□□□□ -1.11
USP39-216ENST00000490193 NCSTNQ92542 709 aa8.12□□□□□ -1.11
USP39-216ENST00000490193 AP2M1Q96CW1 435 aa8.12□□□□□ -1.11
USP39-216ENST00000490193 PEBP4Q96S96 227 aa8.12□□□□□ -1.11
USP39-216ENST00000490193 KCTD15Q96SI1 283 aaPredicted RBP8.12□□□□□ -1.11
USP39-216ENST00000490193 HERPUD2Q9BSE4 406 aa8.12□□□□□ -1.11
USP39-216ENST00000490193 ULBP3Q9BZM4 244 aa8.12□□□□□ -1.11
USP39-216ENST00000490193 DHX35Q9H5Z1 703 aaKnown RBP8.12□□□□□ -1.11
USP39-216ENST00000490193 UCK1Q9HA47 277 aa8.12□□□□□ -1.11
USP39-216ENST00000490193 NOD2Q9HC29 1040 aa8.12□□□□□ -1.11
USP39-216ENST00000490193 NLRC4Q9NPP4 1024 aa8.12□□□□□ -1.11
USP39-216ENST00000490193 FAM207AQ9NSI2 230 aaPredicted RBP8.12□□□□□ -1.11
USP39-216ENST00000490193 SAMSN1Q9NSI8 373 aaKnown RBP8.12□□□□□ -1.11
USP39-216ENST00000490193 TBC1D29Q9UFV1 150 aa8.12□□□□□ -1.11
USP39-216ENST00000490193 KCND3Q9UK17 655 aa8.12□□□□□ -1.11
USP39-216ENST00000490193 CROTQ9UKG9 612 aa8.12□□□□□ -1.11
USP39-216ENST00000490193 SRPK3Q9UPE1 567 aa8.12□□□□□ -1.11
USP39-216ENST00000490193 SIK3Q9Y2K2 1263 aa8.12□□□□□ -1.11
USP39-216ENST00000490193 TMEM98Q9Y2Y6 226 aa8.12□□□□□ -1.11
USP39-216ENST00000490193 ESPL1Q14674 2120 aa8.12□□□□□ -1.11
USP39-216ENST00000490193 HIVEP3Q5T1R4 2406 aa8.12□□□□□ -1.11
USP39-216ENST00000490193 ABCA12Q86UK0 2595 aa8.12□□□□□ -1.11
USP39-216ENST00000490193 CACNA1DQ01668 2161 aa8.11□□□□□ -1.11
USP39-216ENST00000490193 TRBV23OR9-2A0A075B6M9 112 aa8.11□□□□□ -1.11
USP39-216ENST00000490193 TTC24A2A3L6 582 aaPredicted RBP8.11□□□□□ -1.11
USP39-216ENST00000490193 GOLGA6CA6NDK9 693 aa8.11□□□□□ -1.11
USP39-216ENST00000490193 GOLGA6BA6NDN3 693 aa8.11□□□□□ -1.11
USP39-216ENST00000490193 OR5K4A6NMS3 321 aa8.11□□□□□ -1.11
USP39-216ENST00000490193 DAPK3O43293 454 aa8.11□□□□□ -1.11
USP39-216ENST00000490193 MAFKO60675 156 aa8.11□□□□□ -1.11
USP39-216ENST00000490193 S1PR4O95977 384 aa8.11□□□□□ -1.11
USP39-216ENST00000490193 PDGFAP04085 211 aa8.11□□□□□ -1.11
USP39-216ENST00000490193 GOLGA6DP0CG33 693 aa8.11□□□□□ -1.11
USP39-216ENST00000490193 F3P13726 295 aa8.11□□□□□ -1.11
USP39-216ENST00000490193 ZNF28P17035 718 aa8.11□□□□□ -1.11
USP39-216ENST00000490193 TNFAIP3P21580 790 aa8.11□□□□□ -1.11
USP39-216ENST00000490193 GNLYP22749 145 aa8.11□□□□□ -1.11
USP39-216ENST00000490193 KLK7P49862 253 aa8.11□□□□□ -1.11
USP39-216ENST00000490193 CLCNKAP51800 687 aa8.11□□□□□ -1.11
USP39-216ENST00000490193 UBE2HP62256 183 aa8.11□□□□□ -1.11
USP39-216ENST00000490193 PTSQ03393 145 aa8.11□□□□□ -1.11
USP39-216ENST00000490193 NFATC2Q13469 925 aa8.11□□□□□ -1.11
USP39-216ENST00000490193 IL11RAQ14626 422 aa8.11□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms