RNA–Protein interactions for RNA: ENST00000487698.5

SF3B1-211, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 1 (best) BASIC

Gene SF3B1, Length 2,127 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-211ENST00000487698 ATG14Q6ZNE5 492 aa9.38□□□□□ -0.91
SF3B1-211ENST00000487698 MTSS1LQ765P7 747 aa9.38□□□□□ -0.91
SF3B1-211ENST00000487698 TAS2R42Q7RTR8 314 aa9.38□□□□□ -0.91
SF3B1-211ENST00000487698 SERPINA9Q86WD7 417 aa9.38□□□□□ -0.91
SF3B1-211ENST00000487698 TBRG4Q969Z0 631 aaKnown RBP eCLIP9.38□□□□□ -0.91
SF3B1-211ENST00000487698 PBXIP1Q96AQ6 731 aa9.38□□□□□ -0.91
SF3B1-211ENST00000487698 CCDC97Q96F63 343 aaPredicted RBP9.38□□□□□ -0.91
SF3B1-211ENST00000487698 SCYL1Q96KG9 808 aa9.38□□□□□ -0.91
SF3B1-211ENST00000487698 RMDN2Q96LZ7 410 aa9.38□□□□□ -0.91
SF3B1-211ENST00000487698 NECTIN4Q96NY8 510 aa9.38□□□□□ -0.91
SF3B1-211ENST00000487698 SORT1Q99523 831 aa9.38□□□□□ -0.91
SF3B1-211ENST00000487698 PLCD4Q9BRC7 762 aa9.38□□□□□ -0.91
SF3B1-211ENST00000487698 TRMT61BQ9BVS5 477 aaKnown RBP9.38□□□□□ -0.91
SF3B1-211ENST00000487698 NPHS2Q9NP85 383 aa9.38□□□□□ -0.91
SF3B1-211ENST00000487698 PCDH12Q9NPG4 1184 aa9.38□□□□□ -0.91
SF3B1-211ENST00000487698 TAS2R13Q9NYV9 303 aa9.38□□□□□ -0.91
SF3B1-211ENST00000487698 THAP10Q9P2Z0 257 aaPredicted RBP9.38□□□□□ -0.91
SF3B1-211ENST00000487698 C16orf96A6NNT2 1141 aa9.38□□□□□ -0.91
SF3B1-211ENST00000487698 ITM2AO43736 263 aa9.38□□□□□ -0.91
SF3B1-211ENST00000487698 TRIM13O60858 407 aa9.38□□□□□ -0.91
SF3B1-211ENST00000487698 H2AFYO75367 372 aaKnown RBP9.38□□□□□ -0.91
SF3B1-211ENST00000487698 RHOBTB1O94844 696 aa9.38□□□□□ -0.91
SF3B1-211ENST00000487698 PRNPP04156 253 aa9.38□□□□□ -0.91
SF3B1-211ENST00000487698 CYP2A6P11509 494 aaPredicted RBP9.38□□□□□ -0.91
SF3B1-211ENST00000487698 CD1DP15813 335 aa9.38□□□□□ -0.91
SF3B1-211ENST00000487698 ACRV1P26436 265 aa9.38□□□□□ -0.91
SF3B1-211ENST00000487698 MMP12P39900 470 aa9.38□□□□□ -0.91
SF3B1-211ENST00000487698 SPINT3P49223 89 aa9.38□□□□□ -0.91
SF3B1-211ENST00000487698 PFKPQ01813 784 aa9.38□□□□□ -0.91
SF3B1-211ENST00000487698 RALGDSQ12967 914 aa9.38□□□□□ -0.91
SF3B1-211ENST00000487698 ELAVL3Q14576 367 aaKnown RBP9.38□□□□□ -0.91
SF3B1-211ENST00000487698 CHRNA6Q15825 494 aa9.38□□□□□ -0.91
SF3B1-211ENST00000487698 LIPMQ5VYY2 423 aa9.38□□□□□ -0.91
SF3B1-211ENST00000487698 ZDHHC20Q5W0Z9 365 aa9.38□□□□□ -0.91
SF3B1-211ENST00000487698 DPPA4Q7L190 304 aa9.38□□□□□ -0.91
SF3B1-211ENST00000487698 PARS2Q7L3T8 475 aaKnown RBP9.38□□□□□ -0.91
SF3B1-211ENST00000487698 NXPE1Q8N323 547 aa9.38□□□□□ -0.91
SF3B1-211ENST00000487698 TMIEQ8NEW7 156 aa9.38□□□□□ -0.91
SF3B1-211ENST00000487698 PPP1R14CQ8TAE6 165 aa9.38□□□□□ -0.91
SF3B1-211ENST00000487698 KCNJ9Q92806 393 aa9.38□□□□□ -0.91
SF3B1-211ENST00000487698 THOC1Q96FV9 657 aaKnown RBP9.38□□□□□ -0.91
SF3B1-211ENST00000487698 TRIM55Q9BYV6 548 aa9.38□□□□□ -0.91
SF3B1-211ENST00000487698 UNKQ9C0B0 810 aaKnown RBP9.38□□□□□ -0.91
SF3B1-211ENST00000487698 CCDC68Q9H2F9 335 aa9.38□□□□□ -0.91
SF3B1-211ENST00000487698 ASB8Q9H765 288 aa9.38□□□□□ -0.91
SF3B1-211ENST00000487698 KCNK13Q9HB14 408 aa9.38□□□□□ -0.91
SF3B1-211ENST00000487698 NFKBIL1Q9UBC1 381 aaPredicted RBP9.38□□□□□ -0.91
SF3B1-211ENST00000487698 SARDHQ9UL12 918 aa9.38□□□□□ -0.91
SF3B1-211ENST00000487698 PPM1HQ9ULR3 514 aa9.38□□□□□ -0.91
SF3B1-211ENST00000487698 NUMBLQ9Y6R0 609 aa9.38□□□□□ -0.91
SF3B1-211ENST00000487698 F5P12259 2224 aa9.38□□□□□ -0.91
SF3B1-211ENST00000487698 TBC1D3BA6NDS4 549 aa9.37□□□□□ -0.91
SF3B1-211ENST00000487698 TMEM114B3SHH9 223 aa9.37□□□□□ -0.91
SF3B1-211ENST00000487698 PRMT5O14744 637 aaPredicted RBP9.37□□□□□ -0.91
SF3B1-211ENST00000487698 SPINT1O43278 529 aa9.37□□□□□ -0.91
SF3B1-211ENST00000487698 DLX3O60479 287 aa9.37□□□□□ -0.91
SF3B1-211ENST00000487698 NIPSNAP2O75323 286 aa9.37□□□□□ -0.91
SF3B1-211ENST00000487698 LYPLA1O75608 230 aaPredicted RBP9.37□□□□□ -0.91
SF3B1-211ENST00000487698 RBP1P09455 135 aa9.37□□□□□ -0.91
SF3B1-211ENST00000487698 NFKBIAP25963 317 aa9.37□□□□□ -0.91
SF3B1-211ENST00000487698 ITGB7P26010 798 aa9.37□□□□□ -0.91
SF3B1-211ENST00000487698 GRIA2P42262 883 aa9.37□□□□□ -0.91
SF3B1-211ENST00000487698 SLC1A6P48664 564 aa9.37□□□□□ -0.91
SF3B1-211ENST00000487698 PRKAA2P54646 552 aa9.37□□□□□ -0.91
SF3B1-211ENST00000487698 DCDC1P59894 354 aa9.37□□□□□ -0.91
SF3B1-211ENST00000487698 PDAP1Q13442 181 aaKnown RBP9.37□□□□□ -0.91
SF3B1-211ENST00000487698 LYPLAL1Q5VWZ2 237 aa9.37□□□□□ -0.91
SF3B1-211ENST00000487698 KLC3Q6P597 504 aa9.37□□□□□ -0.91
SF3B1-211ENST00000487698 SERPINA13PQ6UXR4 307 aa9.37□□□□□ -0.91
SF3B1-211ENST00000487698 RFLNAQ6ZTI6 216 aa9.37□□□□□ -0.91
SF3B1-211ENST00000487698 EP400NLQ6ZTU2 488 aa9.37□□□□□ -0.91
SF3B1-211ENST00000487698 ISCA2Q86U28 154 aa9.37□□□□□ -0.91
SF3B1-211ENST00000487698 RBFAQ8N0V3 343 aa9.37□□□□□ -0.91
SF3B1-211ENST00000487698 TXNDC5Q8NBS9 432 aaKnown RBP9.37□□□□□ -0.91
SF3B1-211ENST00000487698 GIMAP7Q8NHV1 300 aa9.37□□□□□ -0.91
SF3B1-211ENST00000487698 RFWD2Q8NHY2 731 aa9.37□□□□□ -0.91
SF3B1-211ENST00000487698 CD200R1Q8TD46 325 aa9.37□□□□□ -0.91
SF3B1-211ENST00000487698 DTX3LQ8TDB6 740 aa9.37□□□□□ -0.91
SF3B1-211ENST00000487698 UCMAQ8WVF2 138 aa9.37□□□□□ -0.91
SF3B1-211ENST00000487698 OR8D1Q8WZ84 308 aa9.37□□□□□ -0.91
SF3B1-211ENST00000487698 CCT6BQ92526 530 aa9.37□□□□□ -0.91
SF3B1-211ENST00000487698 PTERQ96BW5 349 aa9.37□□□□□ -0.91
SF3B1-211ENST00000487698 FAM129BQ96TA1 746 aa9.37□□□□□ -0.91
SF3B1-211ENST00000487698 GPR21Q99679 349 aa9.37□□□□□ -0.91
SF3B1-211ENST00000487698 GALPQ9UBC7 116 aa9.37□□□□□ -0.91
SF3B1-211ENST00000487698 FAM50BQ9Y247 325 aa9.37□□□□□ -0.91
SF3B1-211ENST00000487698 PCDHB1Q9Y5F3 818 aa9.37□□□□□ -0.91
SF3B1-211ENST00000487698 USH1CQ9Y6N9 552 aa9.37□□□□□ -0.91
SF3B1-211ENST00000487698 ANKRD12Q6UB98 2062 aa9.37□□□□□ -0.91
SF3B1-211ENST00000487698 UNC80Q8N2C7 3258 aa9.37□□□□□ -0.91
SF3B1-211ENST00000487698 ANTXRLA6NF34 631 aa9.37□□□□□ -0.91
SF3B1-211ENST00000487698 CCT8L1PA6NM43 557 aa9.37□□□□□ -0.91
SF3B1-211ENST00000487698 H3BMM5 538 aa9.37□□□□□ -0.91
SF3B1-211ENST00000487698 ZBTB14O43829 449 aa9.37□□□□□ -0.91
SF3B1-211ENST00000487698 VPS26AO75436 327 aa9.37□□□□□ -0.91
SF3B1-211ENST00000487698 TSPAN12O95859 305 aa9.37□□□□□ -0.91
SF3B1-211ENST00000487698 PYGLP06737 847 aa9.37□□□□□ -0.91
SF3B1-211ENST00000487698 ZNF7P17097 686 aaPredicted RBP9.37□□□□□ -0.91
SF3B1-211ENST00000487698 UGT1A6P19224 532 aa9.37□□□□□ -0.91
SF3B1-211ENST00000487698 TFEBP19484 476 aa9.37□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms