RNA–Protein interactions for RNA: ENST00000487284.2

CUX1-209, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 1,566 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-209ENST00000487284 ZNF460Q14592 562 aa14.13□□□□□ -0.15
CUX1-209ENST00000487284 UBXN2BQ14CS0 331 aa14.13□□□□□ -0.15
CUX1-209ENST00000487284 TJAP1Q5JTD0 557 aa14.13□□□□□ -0.15
CUX1-209ENST00000487284 CES4AQ5XG92 561 aa14.13□□□□□ -0.15
CUX1-209ENST00000487284 ZNF549Q6P9A3 640 aa14.13□□□□□ -0.15
CUX1-209ENST00000487284 Q6ZS52 159 aa14.13□□□□□ -0.15
CUX1-209ENST00000487284 PHF6Q8IWS0 365 aaKnown RBP eCLIP14.13□□□□□ -0.15
CUX1-209ENST00000487284 RPLP0P6Q8NHW5 317 aa14.13□□□□□ -0.15
CUX1-209ENST00000487284 OR8D1Q8WZ84 308 aa14.13□□□□□ -0.15
CUX1-209ENST00000487284 LPGAT1Q92604 370 aa14.13□□□□□ -0.15
CUX1-209ENST00000487284 SHDQ96IW2 340 aa14.13□□□□□ -0.15
CUX1-209ENST00000487284 C7orf26Q96N11 449 aa14.13□□□□□ -0.15
CUX1-209ENST00000487284 GPR78Q96P69 363 aa14.13□□□□□ -0.15
CUX1-209ENST00000487284 MCCC1Q96RQ3 725 aaPredicted RBP14.13□□□□□ -0.15
CUX1-209ENST00000487284 FAM129BQ96TA1 746 aa14.13□□□□□ -0.15
CUX1-209ENST00000487284 GABRG3Q99928 467 aa14.13□□□□□ -0.15
CUX1-209ENST00000487284 PLCD4Q9BRC7 762 aa14.13□□□□□ -0.15
CUX1-209ENST00000487284 ZFYVE1Q9HBF4 777 aa14.13□□□□□ -0.15
CUX1-209ENST00000487284 KLHL14Q9P2G3 628 aa14.13□□□□□ -0.15
CUX1-209ENST00000487284 IL36AQ9UHA7 158 aa14.13□□□□□ -0.15
CUX1-209ENST00000487284 CRYL1Q9Y2S2 319 aa14.13□□□□□ -0.15
CUX1-209ENST00000487284 ARL2BPQ9Y2Y0 163 aa14.13□□□□□ -0.15
CUX1-209ENST00000487284 VWA7Q9Y334 891 aa14.13□□□□□ -0.15
CUX1-209ENST00000487284 MTF2Q9Y483 593 aaPredicted RBP14.13□□□□□ -0.15
CUX1-209ENST00000487284 A0A0C4DFX4 3053 aa14.12□□□□□ -0.15
CUX1-209ENST00000487284 A0A0U1RQS6 177 aa14.12□□□□□ -0.15
CUX1-209ENST00000487284 C1orf232A0A0U1RR37 186 aa14.12□□□□□ -0.15
CUX1-209ENST00000487284 KANSL1LA0AUZ9 987 aa14.12□□□□□ -0.15
CUX1-209ENST00000487284 G3V2L1 256 aa14.12□□□□□ -0.15
CUX1-209ENST00000487284 TGDSO95455 350 aa14.12□□□□□ -0.15
CUX1-209ENST00000487284 PRSS56P0CW18 603 aa14.12□□□□□ -0.15
CUX1-209ENST00000487284 FDXRP22570 491 aa14.12□□□□□ -0.15
CUX1-209ENST00000487284 PMLP29590 882 aa14.12□□□□□ -0.15
CUX1-209ENST00000487284 SLC26A3P40879 764 aa14.12□□□□□ -0.15
CUX1-209ENST00000487284 TTPAP49638 278 aa14.12□□□□□ -0.15
CUX1-209ENST00000487284 SUOXP51687 545 aa14.12□□□□□ -0.15
CUX1-209ENST00000487284 OCRLQ01968 901 aa14.12□□□□□ -0.15
CUX1-209ENST00000487284 DLG1Q12959 904 aa14.12□□□□□ -0.15
CUX1-209ENST00000487284 ARSIQ5FYB1 569 aa14.12□□□□□ -0.15
CUX1-209ENST00000487284 AARS2Q5JTZ9 985 aaKnown RBP14.12□□□□□ -0.15
CUX1-209ENST00000487284 RNF187Q5TA31 235 aaPredicted RBP14.12□□□□□ -0.15
CUX1-209ENST00000487284 PSAPL1Q6NUJ1 521 aa14.12□□□□□ -0.15
CUX1-209ENST00000487284 KIAA1211LQ6NV74 962 aa14.12□□□□□ -0.15
CUX1-209ENST00000487284 GDPD4Q6W3E5 623 aa14.12□□□□□ -0.15
CUX1-209ENST00000487284 TRMT11Q7Z4G4 463 aaKnown RBP14.12□□□□□ -0.15
CUX1-209ENST00000487284 TMEM151AQ8N4L1 468 aa14.12□□□□□ -0.15
CUX1-209ENST00000487284 PAF1Q8N7H5 531 aa14.12□□□□□ -0.15
CUX1-209ENST00000487284 OR6Y1Q8NGX8 325 aa14.12□□□□□ -0.15
CUX1-209ENST00000487284 ZNF398Q8TD17 642 aa14.12□□□□□ -0.15
CUX1-209ENST00000487284 SCRN2Q96FV2 425 aa14.12□□□□□ -0.15
CUX1-209ENST00000487284 KLHL32Q96NJ5 620 aa14.12□□□□□ -0.15
CUX1-209ENST00000487284 POPDC3Q9HBV1 291 aa14.12□□□□□ -0.15
CUX1-209ENST00000487284 BPIFA1Q9NP55 256 aa14.12□□□□□ -0.15
CUX1-209ENST00000487284 SARDHQ9UL12 918 aa14.12□□□□□ -0.15
CUX1-209ENST00000487284 VPS9D1Q9Y2B5 631 aa14.12□□□□□ -0.15
CUX1-209ENST00000487284 MRPS17Q9Y2R5 130 aaKnown RBP14.12□□□□□ -0.15
CUX1-209ENST00000487284 TSPAN11A1L157 253 aa14.11□□□□□ -0.15
CUX1-209ENST00000487284 NPIPB15A6NHN6 443 aaPredicted RBP14.11□□□□□ -0.15
CUX1-209ENST00000487284 TARM1B6A8C7 271 aa14.11□□□□□ -0.15
CUX1-209ENST00000487284 SERPINE1P05121 402 aa14.11□□□□□ -0.15
CUX1-209ENST00000487284 SBK3P0C264 359 aa14.11□□□□□ -0.15
CUX1-209ENST00000487284 TROVE2P10155 538 aaKnown RBP eCLIP14.11□□□□□ -0.15
CUX1-209ENST00000487284 HOXB2P14652 356 aa14.11□□□□□ -0.15
CUX1-209ENST00000487284 COL9A1P20849 921 aa14.11□□□□□ -0.15
CUX1-209ENST00000487284 KCNA4P22459 653 aa14.11□□□□□ -0.15
CUX1-209ENST00000487284 KPNA2P52292 529 aaKnown RBP14.11□□□□□ -0.15
CUX1-209ENST00000487284 CDKN2DP55273 166 aa14.11□□□□□ -0.15
CUX1-209ENST00000487284 CACNG1Q06432 222 aa14.11□□□□□ -0.15
CUX1-209ENST00000487284 IFT88Q13099 833 aa14.11□□□□□ -0.15
CUX1-209ENST00000487284 STX3Q13277 289 aa14.11□□□□□ -0.15
CUX1-209ENST00000487284 CAMK2GQ13555 558 aaPredicted RBP14.11□□□□□ -0.15
CUX1-209ENST00000487284 POM121L1PQ3SYA9 428 aa14.11□□□□□ -0.15
CUX1-209ENST00000487284 SDE2Q6IQ49 451 aa14.11□□□□□ -0.15
CUX1-209ENST00000487284 LRRC8EQ6NSJ5 796 aa14.11□□□□□ -0.15
CUX1-209ENST00000487284 USP45Q70EL2 814 aa14.11□□□□□ -0.15
CUX1-209ENST00000487284 YTHDF3Q7Z739 585 aaKnown RBP14.11□□□□□ -0.15
CUX1-209ENST00000487284 TBC1D1Q86TI0 1168 aaPredicted RBP14.11□□□□□ -0.15
CUX1-209ENST00000487284 CACUL1Q86Y37 369 aa14.11□□□□□ -0.15
CUX1-209ENST00000487284 C10orf107Q8IVU9 208 aa14.11□□□□□ -0.15
CUX1-209ENST00000487284 PIANPQ8IYJ0 282 aa14.11□□□□□ -0.15
CUX1-209ENST00000487284 NXNL1Q96CM4 212 aa14.11□□□□□ -0.15
CUX1-209ENST00000487284 UBXN10Q96LJ8 280 aa14.11□□□□□ -0.15
CUX1-209ENST00000487284 AARSD1Q9BTE6 412 aaKnown RBP14.11□□□□□ -0.15
CUX1-209ENST00000487284 TBC1D17Q9HA65 648 aa14.11□□□□□ -0.15
CUX1-209ENST00000487284 LMAN1LQ9HAT1 526 aa14.11□□□□□ -0.15
CUX1-209ENST00000487284 IGSF5Q9NSI5 407 aa14.11□□□□□ -0.15
CUX1-209ENST00000487284 RUVBL2Q9Y230 463 aaKnown RBP14.11□□□□□ -0.15
CUX1-209ENST00000487284 TTC28Q96AY4 2481 aa14.11□□□□□ -0.15
CUX1-209ENST00000487284 A0A1W2PQF6 199 aa14.1□□□□□ -0.15
CUX1-209ENST00000487284 TK2O00142 265 aa14.1□□□□□ -0.15
CUX1-209ENST00000487284 KPNA3O00505 521 aaPredicted RBP14.1□□□□□ -0.15
CUX1-209ENST00000487284 GAPDHSO14556 408 aaPredicted RBP14.1□□□□□ -0.15
CUX1-209ENST00000487284 PFDN6O15212 129 aa14.1□□□□□ -0.15
CUX1-209ENST00000487284 SYNCRIPO60506 623 aaKnown RBP14.1□□□□□ -0.15
CUX1-209ENST00000487284 NDUFS3O75489 264 aa14.1□□□□□ -0.15
CUX1-209ENST00000487284 PRNPP04156 253 aa14.1□□□□□ -0.15
CUX1-209ENST00000487284 GRK2P25098 689 aa14.1□□□□□ -0.15
CUX1-209ENST00000487284 CDKN1CP49918 316 aaPredicted RBP14.1□□□□□ -0.15
CUX1-209ENST00000487284 METAP1P53582 386 aa14.1□□□□□ -0.15
CUX1-209ENST00000487284 ZXDAP98168 799 aa14.1□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 58.6 ms