RNA–Protein interactions for RNA: ENST00000487043.5

PTCD3-216, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 3

Gene PTCD3, Length 1,054 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-216ENST00000487043 HAPLN4Q86UW8 402 aa4.13□□□□□ -1.75
PTCD3-216ENST00000487043 VSIG1Q86XK7 387 aa4.13□□□□□ -1.75
PTCD3-216ENST00000487043 DNAAF5Q86Y56 855 aa4.13□□□□□ -1.75
PTCD3-216ENST00000487043 DDIASQ8IXT1 998 aa4.13□□□□□ -1.75
PTCD3-216ENST00000487043 NKAIN3Q8N8D7 197 aa4.13□□□□□ -1.75
PTCD3-216ENST00000487043 LRRC57Q8N9N7 239 aa4.13□□□□□ -1.75
PTCD3-216ENST00000487043 IL17RCQ8NAC3 791 aa4.13□□□□□ -1.75
PTCD3-216ENST00000487043 APPL2Q8NEU8 664 aa4.13□□□□□ -1.75
PTCD3-216ENST00000487043 GJC3Q8NFK1 279 aa4.13□□□□□ -1.75
PTCD3-216ENST00000487043 PRPF31Q8WWY3 499 aaKnown RBP4.13□□□□□ -1.75
PTCD3-216ENST00000487043 RNF183Q96D59 192 aa4.13□□□□□ -1.75
PTCD3-216ENST00000487043 TMEM68Q96MH6 324 aa4.13□□□□□ -1.75
PTCD3-216ENST00000487043 ALDH8A1Q9H2A2 487 aaPredicted RBP4.13□□□□□ -1.75
PTCD3-216ENST00000487043 RABEP2Q9H5N1 569 aa4.13□□□□□ -1.75
PTCD3-216ENST00000487043 PDZD7Q9H5P4 517 aa4.13□□□□□ -1.75
PTCD3-216ENST00000487043 LTB4R2Q9NPC1 389 aa4.13□□□□□ -1.75
PTCD3-216ENST00000487043 SLC35C2Q9NQQ7 365 aa4.13□□□□□ -1.75
PTCD3-216ENST00000487043 SETD4Q9NVD3 440 aa4.13□□□□□ -1.75
PTCD3-216ENST00000487043 NUP98P52948 1817 aa4.13□□□□□ -1.75
PTCD3-216ENST00000487043 TAF1LQ8IZX4 1826 aa4.13□□□□□ -1.75
PTCD3-216ENST00000487043 CDHR2Q9BYE9 1310 aa4.13□□□□□ -1.75
PTCD3-216ENST00000487043 C17orf102A2RUQ5 167 aa4.12□□□□□ -1.75
PTCD3-216ENST00000487043 OR2A25A4D2G3 310 aa4.12□□□□□ -1.75
PTCD3-216ENST00000487043 CDRT15L2A8MXV6 281 aa4.12□□□□□ -1.75
PTCD3-216ENST00000487043 HCRTR2O43614 444 aa4.12□□□□□ -1.75
PTCD3-216ENST00000487043 SURF6O75683 361 aaKnown RBP4.12□□□□□ -1.75
PTCD3-216ENST00000487043 RPN1P04843 607 aaKnown RBP4.12□□□□□ -1.75
PTCD3-216ENST00000487043 SRPRAP08240 638 aaKnown RBP4.12□□□□□ -1.75
PTCD3-216ENST00000487043 TFPIP10646 304 aa4.12□□□□□ -1.75
PTCD3-216ENST00000487043 UNGP13051 313 aaPredicted RBP4.12□□□□□ -1.75
PTCD3-216ENST00000487043 ZNF182P17025 639 aaPredicted RBP4.12□□□□□ -1.75
PTCD3-216ENST00000487043 GPTP24298 496 aa4.12□□□□□ -1.75
PTCD3-216ENST00000487043 EPHB2P29323 1055 aa4.12□□□□□ -1.75
PTCD3-216ENST00000487043 SHMT1P34896 483 aa4.12□□□□□ -1.75
PTCD3-216ENST00000487043 RFC4P35249 363 aa4.12□□□□□ -1.75
PTCD3-216ENST00000487043 RFX5P48382 616 aaPredicted RBP4.12□□□□□ -1.75
PTCD3-216ENST00000487043 PTH2RP49190 550 aa4.12□□□□□ -1.75
PTCD3-216ENST00000487043 PPP5CP53041 499 aa4.12□□□□□ -1.75
PTCD3-216ENST00000487043 HSF1Q00613 529 aa4.12□□□□□ -1.75
PTCD3-216ENST00000487043 SORDQ00796 357 aa4.12□□□□□ -1.75
PTCD3-216ENST00000487043 ITGADQ13349 1161 aa4.12□□□□□ -1.75
PTCD3-216ENST00000487043 EPHA10Q5JZY3 1008 aa4.12□□□□□ -1.75
PTCD3-216ENST00000487043 SLC10A5Q5PT55 438 aa4.12□□□□□ -1.75
PTCD3-216ENST00000487043 TTC39AQ5SRH9 613 aa4.12□□□□□ -1.75
PTCD3-216ENST00000487043 PRAMEF19Q5SWL8 479 aa4.12□□□□□ -1.75
PTCD3-216ENST00000487043 SUSD4Q5VX71 490 aa4.12□□□□□ -1.75
PTCD3-216ENST00000487043 HIST2H2BCQ6DN03 193 aa4.12□□□□□ -1.75
PTCD3-216ENST00000487043 HIST2H2BDQ6DRA6 164 aa4.12□□□□□ -1.75
PTCD3-216ENST00000487043 ISM2Q6H9L7 571 aa4.12□□□□□ -1.75
PTCD3-216ENST00000487043 HMBOX1Q6NT76 420 aa4.12□□□□□ -1.75
PTCD3-216ENST00000487043 FAM57BQ71RH2 274 aa4.12□□□□□ -1.75
PTCD3-216ENST00000487043 KBTBD6Q86V97 674 aa4.12□□□□□ -1.75
PTCD3-216ENST00000487043 TMC8Q8IU68 726 aa4.12□□□□□ -1.75
PTCD3-216ENST00000487043 FAM185AQ8N0U4 392 aa4.12□□□□□ -1.75
PTCD3-216ENST00000487043 SLC25A41Q8N5S1 370 aa4.12□□□□□ -1.75
PTCD3-216ENST00000487043 HORMAD2Q8N7B1 307 aa4.12□□□□□ -1.75
PTCD3-216ENST00000487043 POMGNT2Q8NAT1 580 aa4.12□□□□□ -1.75
PTCD3-216ENST00000487043 POGLUT1Q8NBL1 392 aa4.12□□□□□ -1.75
PTCD3-216ENST00000487043 BCAS4Q8TDM0 211 aa4.12□□□□□ -1.75
PTCD3-216ENST00000487043 SGCDQ92629 289 aa4.12□□□□□ -1.75
PTCD3-216ENST00000487043 OR2A14Q96R47 310 aa4.12□□□□□ -1.75
PTCD3-216ENST00000487043 PAFAH2Q99487 392 aa4.12□□□□□ -1.75
PTCD3-216ENST00000487043 UTP14AQ9BVJ6 771 aaKnown RBP4.12□□□□□ -1.75
PTCD3-216ENST00000487043 C1QTNF5Q9BXJ0 243 aa4.12□□□□□ -1.75
PTCD3-216ENST00000487043 LHPPQ9H008 270 aa4.12□□□□□ -1.75
PTCD3-216ENST00000487043 BICC1Q9H694 974 aaKnown RBP4.12□□□□□ -1.75
PTCD3-216ENST00000487043 MAGEE1Q9HCI5 957 aa4.12□□□□□ -1.75
PTCD3-216ENST00000487043 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP4.12□□□□□ -1.75
PTCD3-216ENST00000487043 ARPP21Q9UBL0 812 aaPredicted RBP4.12□□□□□ -1.75
PTCD3-216ENST00000487043 TRMT112Q9UI30 125 aaKnown RBP4.12□□□□□ -1.75
PTCD3-216ENST00000487043 NIP7Q9Y221 180 aaKnown RBP eCLIP4.12□□□□□ -1.75
PTCD3-216ENST00000487043 R3HDM2Q9Y2K5 976 aaKnown RBP4.12□□□□□ -1.75
PTCD3-216ENST00000487043 CEPT1Q9Y6K0 416 aa4.12□□□□□ -1.75
PTCD3-216ENST00000487043 A3GALT2U3KPV4 340 aa4.12□□□□□ -1.75
PTCD3-216ENST00000487043 C4BP0C0L5 1744 aa4.12□□□□□ -1.75
PTCD3-216ENST00000487043 AFDNP55196 1824 aaKnown RBP4.11□□□□□ -1.75
PTCD3-216ENST00000487043 PCSK5Q92824 1860 aa4.11□□□□□ -1.75
PTCD3-216ENST00000487043 hCG_1809904A0A1W2PP81 198 aa4.11□□□□□ -1.75
PTCD3-216ENST00000487043 A0A1W2PPE2 198 aa4.11□□□□□ -1.75
PTCD3-216ENST00000487043 A0A1W2PR64 198 aa4.11□□□□□ -1.75
PTCD3-216ENST00000487043 H3BQ06 376 aaPredicted RBP4.11□□□□□ -1.75
PTCD3-216ENST00000487043 HSPB6O14558 160 aa4.11□□□□□ -1.75
PTCD3-216ENST00000487043 FOXN1O15353 648 aa4.11□□□□□ -1.75
PTCD3-216ENST00000487043 TOP3BO95985 862 aaKnown RBP4.11□□□□□ -1.75
PTCD3-216ENST00000487043 AFPP02771 609 aaKnown RBP4.11□□□□□ -1.75
PTCD3-216ENST00000487043 ETFAP13804 333 aa4.11□□□□□ -1.75
PTCD3-216ENST00000487043 CAPZA2P47755 286 aa4.11□□□□□ -1.75
PTCD3-216ENST00000487043 CXCR3P49682 368 aa4.11□□□□□ -1.75
PTCD3-216ENST00000487043 STAT2P52630 851 aa4.11□□□□□ -1.75
PTCD3-216ENST00000487043 ARHGEF6Q15052 776 aa4.11□□□□□ -1.75
PTCD3-216ENST00000487043 KYNUQ16719 465 aa4.11□□□□□ -1.75
PTCD3-216ENST00000487043 SLC9C1Q4G0N8 1177 aa4.11□□□□□ -1.75
PTCD3-216ENST00000487043 MIDNQ504T8 468 aa4.11□□□□□ -1.75
PTCD3-216ENST00000487043 ESCO2Q56NI9 601 aa4.11□□□□□ -1.75
PTCD3-216ENST00000487043 IGSF11Q5DX21 431 aa4.11□□□□□ -1.75
PTCD3-216ENST00000487043 FCRLBQ6BAA4 426 aa4.11□□□□□ -1.75
PTCD3-216ENST00000487043 ADALQ6DHV7 355 aa4.11□□□□□ -1.75
PTCD3-216ENST00000487043 MIS18BP1Q6P0N0 1132 aa4.11□□□□□ -1.75
PTCD3-216ENST00000487043 OLFML1Q6UWY5 402 aa4.11□□□□□ -1.75
PTCD3-216ENST00000487043 QSOX2Q6ZRP7 698 aa4.11□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms