RNA–Protein interactions for RNA: ENST00000486404.5

CHMP3-208, Transcript of charged multivesicular body protein 3, human

TSL 3

Gene CHMP3, Length 650 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CHMP3-208	ENST00000486404	NUDT21	O43809	227 aa	Known RBP	12.79	□□□□□ -0.36
CHMP3-208	ENST00000486404	ZNF189	O75820	626 aa	Predicted RBP	12.79	□□□□□ -0.36
CHMP3-208	ENST00000486404	FTCD	O95954	541 aa		12.79	□□□□□ -0.36
CHMP3-208	ENST00000486404	ATP1A1	P05023	1023 aa	Known RBP	12.79	□□□□□ -0.36
CHMP3-208	ENST00000486404	CD68	P34810	354 aa	Predicted RBP	12.79	□□□□□ -0.36
CHMP3-208	ENST00000486404	MAZ	P56270	477 aa	Known RBP	12.79	□□□□□ -0.36
CHMP3-208	ENST00000486404	EIF3E	P60228	445 aa	Known RBP	12.79	□□□□□ -0.36
CHMP3-208	ENST00000486404	MPP3	Q13368	585 aa		12.79	□□□□□ -0.36
CHMP3-208	ENST00000486404	HLTF	Q14527	1009 aa	Known RBP eCLIP	12.79	□□□□□ -0.36
CHMP3-208	ENST00000486404	TBC1D25	Q3MII6	688 aa		12.79	□□□□□ -0.36
CHMP3-208	ENST00000486404	MAP9	Q49MG5	647 aa		12.79	□□□□□ -0.36
CHMP3-208	ENST00000486404	PDPK2P	Q6A1A2	396 aa		12.79	□□□□□ -0.36
CHMP3-208	ENST00000486404	DARS2	Q6PI48	645 aa	Known RBP	12.79	□□□□□ -0.36
CHMP3-208	ENST00000486404	PHYKPL	Q8IUZ5	450 aa		12.79	□□□□□ -0.36
CHMP3-208	ENST00000486404	LSMEM2	Q8N112	164 aa		12.79	□□□□□ -0.36
CHMP3-208	ENST00000486404	SLC25A41	Q8N5S1	370 aa		12.79	□□□□□ -0.36
CHMP3-208	ENST00000486404	PTCD2	Q8WV60	388 aa	Known RBP	12.79	□□□□□ -0.36
CHMP3-208	ENST00000486404	ALG3	Q92685	438 aa		12.79	□□□□□ -0.36
CHMP3-208	ENST00000486404	TADA1	Q96BN2	335 aa		12.79	□□□□□ -0.36
CHMP3-208	ENST00000486404	LRRC45	Q96CN5	670 aa		12.79	□□□□□ -0.36
CHMP3-208	ENST00000486404	COX14	Q96I36	57 aa		12.79	□□□□□ -0.36
CHMP3-208	ENST00000486404	FCRL5	Q96RD9	977 aa		12.79	□□□□□ -0.36
CHMP3-208	ENST00000486404	STRADB	Q9C0K7	418 aa		12.79	□□□□□ -0.36
CHMP3-208	ENST00000486404	GBA3	Q9H227	469 aa		12.79	□□□□□ -0.36
CHMP3-208	ENST00000486404	POLR1B	Q9H9Y6	1135 aa		12.79	□□□□□ -0.36
CHMP3-208	ENST00000486404	LRIT1	Q9P2V4	623 aa		12.79	□□□□□ -0.36
CHMP3-208	ENST00000486404	TRIM10	Q9UDY6	481 aa		12.79	□□□□□ -0.36
CHMP3-208	ENST00000486404	ZNHIT2	Q9UHR6	403 aa		12.79	□□□□□ -0.36
CHMP3-208	ENST00000486404	RABGEF1	Q9UJ41	708 aa		12.79	□□□□□ -0.36
CHMP3-208	ENST00000486404	SATB2	Q9UPW6	733 aa		12.79	□□□□□ -0.36
CHMP3-208	ENST00000486404	EFR3B	Q9Y2G0	817 aa		12.79	□□□□□ -0.36
CHMP3-208	ENST00000486404	RNF215	Q9Y6U7	377 aa		12.79	□□□□□ -0.36
CHMP3-208	ENST00000486404	CCDC187	A0A096LP49	1063 aa		12.78	□□□□□ -0.36
CHMP3-208	ENST00000486404	FADS2P1	A8MWK0	482 aa		12.78	□□□□□ -0.36
CHMP3-208	ENST00000486404	TMX2-CTNND1	H3BSU7	103 aa		12.78	□□□□□ -0.36
CHMP3-208	ENST00000486404	KCNN4	O15554	427 aa		12.78	□□□□□ -0.36
CHMP3-208	ENST00000486404	ANXA9	O76027	345 aa		12.78	□□□□□ -0.36
CHMP3-208	ENST00000486404	FGF1	P05230	155 aa		12.78	□□□□□ -0.36
CHMP3-208	ENST00000486404	RBP3	P10745	1247 aa		12.78	□□□□□ -0.36
CHMP3-208	ENST00000486404	HLA-DPA1	P20036	260 aa		12.78	□□□□□ -0.36
CHMP3-208	ENST00000486404	RBL1	P28749	1068 aa		12.78	□□□□□ -0.36
CHMP3-208	ENST00000486404	RBMS1	P29558	406 aa	Known RBP	12.78	□□□□□ -0.36
CHMP3-208	ENST00000486404	ABCG1	P45844	678 aa		12.78	□□□□□ -0.36
CHMP3-208	ENST00000486404	LSS	P48449	732 aa		12.78	□□□□□ -0.36
CHMP3-208	ENST00000486404	GEM	P55040	296 aa		12.78	□□□□□ -0.36
CHMP3-208	ENST00000486404	PCBP4	P57723	403 aa	Known RBP	12.78	□□□□□ -0.36
CHMP3-208	ENST00000486404	CCL7	P80098	99 aa		12.78	□□□□□ -0.36
CHMP3-208	ENST00000486404	PRPSAP1	Q14558	356 aa		12.78	□□□□□ -0.36
CHMP3-208	ENST00000486404	PYCR3	Q53H96	274 aa		12.78	□□□□□ -0.36
CHMP3-208	ENST00000486404	SIRPB2	Q5JXA9	342 aa		12.78	□□□□□ -0.36
CHMP3-208	ENST00000486404	C19orf48	Q6RUI8	117 aa		12.78	□□□□□ -0.36
CHMP3-208	ENST00000486404	KDELC1	Q6UW63	502 aa		12.78	□□□□□ -0.36
CHMP3-208	ENST00000486404	GLT6D1	Q7Z4J2	308 aa		12.78	□□□□□ -0.36
CHMP3-208	ENST00000486404	SPRED1	Q7Z699	444 aa		12.78	□□□□□ -0.36
CHMP3-208	ENST00000486404	NRROS	Q86YC3	692 aa		12.78	□□□□□ -0.36
CHMP3-208	ENST00000486404	TRAM1L1	Q8N609	369 aa		12.78	□□□□□ -0.36
CHMP3-208	ENST00000486404	BLOC1S5	Q8TDH9	187 aa		12.78	□□□□□ -0.36
CHMP3-208	ENST00000486404	OXNAD1	Q96HP4	312 aa	Predicted RBP	12.78	□□□□□ -0.36
CHMP3-208	ENST00000486404	FAM118B	Q9BPY3	351 aa		12.78	□□□□□ -0.36
CHMP3-208	ENST00000486404	LRRN3	Q9H3W5	708 aa		12.78	□□□□□ -0.36
CHMP3-208	ENST00000486404	TRABD	Q9H4I3	376 aa		12.78	□□□□□ -0.36
CHMP3-208	ENST00000486404	STN1	Q9H668	368 aa	Known RBP	12.78	□□□□□ -0.36
CHMP3-208	ENST00000486404	RMI1	Q9H9A7	625 aa		12.78	□□□□□ -0.36
CHMP3-208	ENST00000486404	THSD1	Q9NS62	852 aa		12.78	□□□□□ -0.36
CHMP3-208	ENST00000486404	SPATS2L	Q9NUQ6	558 aa	Known RBP	12.78	□□□□□ -0.36
CHMP3-208	ENST00000486404	HACD3	Q9P035	362 aa		12.78	□□□□□ -0.36
CHMP3-208	ENST00000486404	NFKBIL1	Q9UBC1	381 aa	Predicted RBP	12.78	□□□□□ -0.36
CHMP3-208	ENST00000486404	PACSIN2	Q9UNF0	486 aa	Predicted RBP	12.78	□□□□□ -0.36
CHMP3-208	ENST00000486404	LHX6	Q9UPM6	363 aa		12.78	□□□□□ -0.36
CHMP3-208	ENST00000486404	SPO11	Q9Y5K1	396 aa		12.78	□□□□□ -0.36
CHMP3-208	ENST00000486404	ENTPD2	Q9Y5L3	495 aa		12.78	□□□□□ -0.36
CHMP3-208	ENST00000486404	OAS3	Q9Y6K5	1087 aa	Known RBP	12.78	□□□□□ -0.36
CHMP3-208	ENST00000486404	URB1	O60287	2271 aa	Known RBP	12.78	□□□□□ -0.36
CHMP3-208	ENST00000486404	DSP	P15924	2871 aa	Known RBP	12.77	□□□□□ -0.36
CHMP3-208	ENST00000486404	NTN3	O00634	580 aa	Predicted RBP	12.77	□□□□□ -0.37
CHMP3-208	ENST00000486404	NRDC	O43847	1150 aa		12.77	□□□□□ -0.37
CHMP3-208	ENST00000486404	SLC25A14	O95258	325 aa	Predicted RBP	12.77	□□□□□ -0.37
CHMP3-208	ENST00000486404	ECEL1	O95672	775 aa		12.77	□□□□□ -0.37
CHMP3-208	ENST00000486404	FUCA1	P04066	466 aa		12.77	□□□□□ -0.37
CHMP3-208	ENST00000486404	PYGM	P11217	842 aa		12.77	□□□□□ -0.37
CHMP3-208	ENST00000486404	ACP5	P13686	325 aa		12.77	□□□□□ -0.37
CHMP3-208	ENST00000486404	SLC2A4	P14672	509 aa		12.77	□□□□□ -0.37
CHMP3-208	ENST00000486404	PNLIP	P16233	465 aa		12.77	□□□□□ -0.37
CHMP3-208	ENST00000486404	PDX1	P52945	283 aa		12.77	□□□□□ -0.37
CHMP3-208	ENST00000486404	INHBC	P55103	352 aa		12.77	□□□□□ -0.37
CHMP3-208	ENST00000486404	GTF2H3	Q13889	308 aa		12.77	□□□□□ -0.37
CHMP3-208	ENST00000486404	SLC1A5	Q15758	541 aa		12.77	□□□□□ -0.37
CHMP3-208	ENST00000486404	AMZ1	Q400G9	498 aa		12.77	□□□□□ -0.37
CHMP3-208	ENST00000486404	SEL1L2	Q5TEA6	688 aa		12.77	□□□□□ -0.37
CHMP3-208	ENST00000486404	AADACL2	Q6P093	401 aa		12.77	□□□□□ -0.37
CHMP3-208	ENST00000486404	OGFOD3	Q6PK18	319 aa		12.77	□□□□□ -0.37
CHMP3-208	ENST00000486404	CHST15	Q7LFX5	561 aa	Predicted RBP	12.77	□□□□□ -0.37
CHMP3-208	ENST00000486404	TMC3	Q7Z5M5	1100 aa		12.77	□□□□□ -0.37
CHMP3-208	ENST00000486404	SFTPA2	Q8IWL1	248 aa		12.77	□□□□□ -0.37
CHMP3-208	ENST00000486404	TTC13	Q8NBP0	860 aa		12.77	□□□□□ -0.37
CHMP3-208	ENST00000486404	GPR26	Q8NDV2	337 aa		12.77	□□□□□ -0.37
CHMP3-208	ENST00000486404	CCDC112	Q8NEF3	446 aa		12.77	□□□□□ -0.37
CHMP3-208	ENST00000486404	WDR36	Q8NI36	951 aa	Known RBP	12.77	□□□□□ -0.37
CHMP3-208	ENST00000486404	SNIP1	Q8TAD8	396 aa	Known RBP	12.77	□□□□□ -0.37
CHMP3-208	ENST00000486404	GDAP1	Q8TB36	358 aa		12.77	□□□□□ -0.37

Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms