RNA–Protein interactions for RNA: ENST00000485947.1

VIM-205, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 1,139 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-205ENST00000485947 NUDCD1Q96RS6 583 aa17■□□□□ 0.31
VIM-205ENST00000485947 RBM15Q96T37 977 aaKnown RBP eCLIP17■□□□□ 0.31
VIM-205ENST00000485947 SPASTQ9UBP0 616 aa17■□□□□ 0.31
VIM-205ENST00000485947 TP53BP1Q12888 1972 aaPredicted RBP17■□□□□ 0.31
VIM-205ENST00000485947 DOCK9Q9BZ29 2069 aa17■□□□□ 0.31
VIM-205ENST00000485947 KNTC1P50748 2209 aa16.99■□□□□ 0.31
VIM-205ENST00000485947 ARID1BQ8NFD5 2236 aaPredicted RBP16.99■□□□□ 0.31
VIM-205ENST00000485947 GOLGA8CPA6NN73 597 aa16.99■□□□□ 0.31
VIM-205ENST00000485947 F5H423 210 aaPredicted RBP16.99■□□□□ 0.31
VIM-205ENST00000485947 GOLGA8MH3BSY2 632 aa16.99■□□□□ 0.31
VIM-205ENST00000485947 TRIM38O00635 465 aa16.99■□□□□ 0.31
VIM-205ENST00000485947 HTRA2O43464 458 aaPredicted RBP16.99■□□□□ 0.31
VIM-205ENST00000485947 ATP8B1O43520 1251 aa16.99■□□□□ 0.31
VIM-205ENST00000485947 SDC3O75056 442 aa16.99■□□□□ 0.31
VIM-205ENST00000485947 CKMT1AP12532 417 aa16.99■□□□□ 0.31
VIM-205ENST00000485947 HTR1BP28222 390 aa16.99■□□□□ 0.31
VIM-205ENST00000485947 MAGEA3P43357 314 aa16.99■□□□□ 0.31
VIM-205ENST00000485947 RGRP47804 291 aa16.99■□□□□ 0.31
VIM-205ENST00000485947 PMS2P54278 862 aa16.99■□□□□ 0.31
VIM-205ENST00000485947 MAXP61244 160 aa16.99■□□□□ 0.31
VIM-205ENST00000485947 DSC2Q02487 901 aa16.99■□□□□ 0.31
VIM-205ENST00000485947 FAM182AQ5T1J6 154 aa16.99■□□□□ 0.31
VIM-205ENST00000485947 ZCCHC8Q6NZY4 707 aaKnown RBP16.99■□□□□ 0.31
VIM-205ENST00000485947 DHRS13Q6UX07 377 aa16.99■□□□□ 0.31
VIM-205ENST00000485947 ZNF534Q76KX8 674 aa16.99■□□□□ 0.31
VIM-205ENST00000485947 TRMT10CQ7L0Y3 403 aaKnown RBP16.99■□□□□ 0.31
VIM-205ENST00000485947 CCDC25Q86WR0 208 aa16.99■□□□□ 0.31
VIM-205ENST00000485947 SEMA3CQ99985 751 aa16.99■□□□□ 0.31
VIM-205ENST00000485947 CCDC86Q9H6F5 360 aaKnown RBP16.99■□□□□ 0.31
VIM-205ENST00000485947 MUSKO15146 869 aa16.98■□□□□ 0.31
VIM-205ENST00000485947 AQP9O43315 295 aa16.98■□□□□ 0.31
VIM-205ENST00000485947 LZTS3O60299 673 aaPredicted RBP16.98■□□□□ 0.31
VIM-205ENST00000485947 HOXC4P09017 264 aaPredicted RBP16.98■□□□□ 0.31
VIM-205ENST00000485947 GIMD1P0DJR0 217 aa16.98■□□□□ 0.31
VIM-205ENST00000485947 C6P13671 934 aa16.98■□□□□ 0.31
VIM-205ENST00000485947 JUNDP17535 347 aa16.98■□□□□ 0.31
VIM-205ENST00000485947 IGFALSP35858 605 aa16.98■□□□□ 0.31
VIM-205ENST00000485947 CD86P42081 329 aa16.98■□□□□ 0.31
VIM-205ENST00000485947 LIG3P49916 1009 aa16.98■□□□□ 0.31
VIM-205ENST00000485947 SKOR1P84550 965 aa16.98■□□□□ 0.31
VIM-205ENST00000485947 NIPAL4Q0D2K0 466 aa16.98■□□□□ 0.31
VIM-205ENST00000485947 DNAJC3Q13217 504 aa16.98■□□□□ 0.31
VIM-205ENST00000485947 MTM1Q13496 603 aa16.98■□□□□ 0.31
VIM-205ENST00000485947 KDELC1Q6UW63 502 aa16.98■□□□□ 0.31
VIM-205ENST00000485947 DPPA4Q7L190 304 aa16.98■□□□□ 0.31
VIM-205ENST00000485947 HDXQ7Z353 690 aa16.98■□□□□ 0.31
VIM-205ENST00000485947 CAND1Q86VP6 1230 aaKnown RBP16.98■□□□□ 0.31
VIM-205ENST00000485947 FSTL5Q8N475 847 aaPredicted RBP16.98■□□□□ 0.31
VIM-205ENST00000485947 PAF1Q8N7H5 531 aa16.98■□□□□ 0.31
VIM-205ENST00000485947 ZNF548Q8NEK5 533 aaPredicted RBP16.98■□□□□ 0.31
VIM-205ENST00000485947 SPATA22Q8NHS9 363 aa16.98■□□□□ 0.31
VIM-205ENST00000485947 TTC25Q96NG3 672 aa16.98■□□□□ 0.31
VIM-205ENST00000485947 WRAP53Q9BUR4 548 aaKnown RBP16.98■□□□□ 0.31
VIM-205ENST00000485947 FSD1LQ9BXM9 530 aa16.98■□□□□ 0.31
VIM-205ENST00000485947 SLC13A1Q9BZW2 595 aa16.98■□□□□ 0.31
VIM-205ENST00000485947 SAYSD1Q9NPB0 183 aa16.98■□□□□ 0.31
VIM-205ENST00000485947 CASS4Q9NQ75 786 aa16.98■□□□□ 0.31
VIM-205ENST00000485947 UCKL1Q9NWZ5 548 aa16.98■□□□□ 0.31
VIM-205ENST00000485947 LHX6Q9UPM6 363 aa16.98■□□□□ 0.31
VIM-205ENST00000485947 LAMA5O15230 3695 aa16.98■□□□□ 0.31
VIM-205ENST00000485947 K7ESM1 405 aa16.97■□□□□ 0.31
VIM-205ENST00000485947 MT-CYBP00156 380 aaPredicted RBP16.97■□□□□ 0.31
VIM-205ENST00000485947 MMP2P08253 660 aa16.97■□□□□ 0.31
VIM-205ENST00000485947 JUPP14923 745 aa16.97■□□□□ 0.31
VIM-205ENST00000485947 ADRA1AP35348 466 aa16.97■□□□□ 0.31
VIM-205ENST00000485947 DAB2P98082 770 aa16.97■□□□□ 0.31
VIM-205ENST00000485947 CDH17Q12864 832 aa16.97■□□□□ 0.31
VIM-205ENST00000485947 PDIA2Q13087 525 aaKnown RBP16.97■□□□□ 0.31
VIM-205ENST00000485947 EIF2B5Q13144 721 aaKnown RBP16.97■□□□□ 0.31
VIM-205ENST00000485947 CAMK2BQ13554 666 aa16.97■□□□□ 0.31
VIM-205ENST00000485947 CASP8Q14790 479 aa16.97■□□□□ 0.31
VIM-205ENST00000485947 IRF4Q15306 451 aa16.97■□□□□ 0.31
VIM-205ENST00000485947 WSCD2Q2TBF2 565 aa16.97■□□□□ 0.31
VIM-205ENST00000485947 BBS9Q3SYG4 887 aa16.97■□□□□ 0.31
VIM-205ENST00000485947 LRRC73Q5JTD7 316 aa16.97■□□□□ 0.31
VIM-205ENST00000485947 ARMC3Q5W041 872 aa16.97■□□□□ 0.31
VIM-205ENST00000485947 LVRNQ6Q4G3 990 aa16.97■□□□□ 0.31
VIM-205ENST00000485947 PROSER1Q86XN7 944 aa16.97■□□□□ 0.31
VIM-205ENST00000485947 RAVER1Q8IY67 606 aaKnown RBP16.97■□□□□ 0.31
VIM-205ENST00000485947 NDUFAF2Q8N183 169 aa16.97■□□□□ 0.31
VIM-205ENST00000485947 GLMNQ92990 594 aa16.97■□□□□ 0.31
VIM-205ENST00000485947 PWWP2AQ96N64 755 aa16.97■□□□□ 0.31
VIM-205ENST00000485947 TBL1YQ9BQ87 522 aa16.97■□□□□ 0.31
VIM-205ENST00000485947 CDC42EP4Q9H3Q1 356 aaKnown RBP16.97■□□□□ 0.31
VIM-205ENST00000485947 VIPAS39Q9H9C1 493 aa16.97■□□□□ 0.31
VIM-205ENST00000485947 SCUBE2Q9NQ36 999 aa16.97■□□□□ 0.31
VIM-205ENST00000485947 MBNL1Q9NR56 388 aaKnown RBP16.97■□□□□ 0.31
VIM-205ENST00000485947 PHTF1Q9UMS5 762 aa16.97■□□□□ 0.31
VIM-205ENST00000485947 ITPR1Q14643 2758 aa16.97■□□□□ 0.31
VIM-205ENST00000485947 ANKRD36A6QL64 1941 aa16.96■□□□□ 0.31
VIM-205ENST00000485947 LMO7DNF2Z398 122 aa16.96■□□□□ 0.31
VIM-205ENST00000485947 PSMD11O00231 422 aa16.96■□□□□ 0.31
VIM-205ENST00000485947 TAF4O00268 1085 aa16.96■□□□□ 0.31
VIM-205ENST00000485947 ELFN1P0C7U0 828 aa16.96■□□□□ 0.31
VIM-205ENST00000485947 TSHRP16473 764 aa16.96■□□□□ 0.31
VIM-205ENST00000485947 CA4P22748 312 aa16.96■□□□□ 0.31
VIM-205ENST00000485947 KELP23276 732 aa16.96■□□□□ 0.31
VIM-205ENST00000485947 MAGEA4P43358 317 aa16.96■□□□□ 0.31
VIM-205ENST00000485947 NPY2RP49146 381 aa16.96■□□□□ 0.31
VIM-205ENST00000485947 RPIAP49247 311 aa16.96■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms